View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4303_low_1 (Length: 810)
Name: NF4303_low_1
Description: NF4303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4303_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 742; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 742; E-Value: 0
Query Start/End: Original strand, 12 - 797
Target Start/End: Complemental strand, 36323014 - 36322224
Alignment:
| Q |
12 |
catcatcaaccaccaccaatataatggtgtcaaacgtttgtcacatgctctatataatataaggaaattgctatgtatcacgacaaa-tattgtcccaat |
110 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36323014 |
catcatcaaccaccaccaatataatggtgtcaaacatttgtcacatgctctatataatataaggaaattgctatgtatcacgacaaaatattgtcccaat |
36322915 |
T |
|
| Q |
111 |
aatttcacaagtgaacatgcaccgaataatcatgatatctccctaaattatgccccaccacctcccttgatttgtgggaagcatgaaatttgattggaaa |
210 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
36322914 |
agtttcacaagtgaacatgcaccgaataatcatgatatctccctaaattatgccccaccacctcccttgatttgtgggaagcatgaaatttgattgaaaa |
36322815 |
T |
|
| Q |
211 |
atagattttcgctggcaattttgggacaacatgtgtcgggataaataacattgctcataatataattatgaaacttaccaaaaactcaaagcagccagaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36322814 |
atagattttcgctggcaattttgggacaacatgtatcgggataaatagcattgctcataatataattatgaaacttaccaaaaactcaaagcagccagaa |
36322715 |
T |
|
| Q |
311 |
ataagaacggatttgtgtcttccaatccatgtatcagcaaaaacggctacgacaatggagagcatgtaacaaacccccatgaagttggttaccatgttag |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36322714 |
ataagaacggatttgtgtcttccaatccatgtatcagcaaaaacggctacgacaatggagagcatgtaacaaacccccatgaagttggttaccatgttag |
36322615 |
T |
|
| Q |
411 |
ctgcatctgctagttcataatgcatgaaaccaacgaagtatgacacaaagttcactgctagtgcaaaagttgccatgttctcaagcgcaaacgcccctgc |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36322614 |
ctgcatctgctagttcataatgcatgaaaccaacgaagtatgacacaaagttcactgctagtgcaaaagttgccatgttctcaagcgcaaacgcccctgc |
36322515 |
T |
|
| Q |
511 |
acctcacacgtacccaaattccacaattattagcaaaaataattgcaattaataatcccaataatccatattggttatttttcatgtaattatactactt |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36322514 |
acctcacacgtacccaaattccacaattattagcaaaaataattgcaattaataatcccaataatccatattggttatttttcatgtaattatactactt |
36322415 |
T |
|
| Q |
611 |
actacttataaggaaaggaaaaattatccatgaaattcttggtcttaattattacctagtatgagccattaaaataaataaa----taaagtacctagta |
706 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36322414 |
actacttacaaggaaaggaaaaattatccatgaaattcttggtcttaattattacctagtatgagccattaaaataaataaataaataaagtacctagta |
36322315 |
T |
|
| Q |
707 |
tgaccaaagaaactttcattcccccatgtttatgtctcacagctcttcttcctttccaatcaacttttccatcaactagctcttcttcctg |
797 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36322314 |
tgaccaaagaaactttcattcccccatgtttatgtctcacagctcttcttcctttccaatcaacttttccatcaactagctcttcttcctg |
36322224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 281 - 513
Target Start/End: Complemental strand, 36329542 - 36329310
Alignment:
| Q |
281 |
aaacttaccaaaaactcaaagcagccagaaataagaacggatttgtgtcttccaatccatgtatcagcaaaaacggctacgacaatggagagcatgtaac |
380 |
Q |
| |
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|||||||||||| |||||||| |||||||||||||||||| ||| | ||||||||| ||| |||||||| |||||| |||||||||||||||| || || |
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| T |
36329542 |
aaacttaccaaacactcaaagaagccagaaataagaacggttttatatcttccaatgaatgaatcagcaagaacggcgacgacaatggagagcaagttac |
36329443 |
T |
|
| Q |
381 |
aaacccccatgaagttggttaccatgttagctgcatctgctagttcataatgcatgaaaccaacgaagtatgacacaaagttcactgctagtgcaaaagt |
480 |
Q |
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||| |||||||| ||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||| | ||| |
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| T |
36329442 |
taactcccatgaaattggttaccatgttagctgcatctgctagttcataatgcataatcccaatgaagtatgacacaaagttcactgctagtgctagagt |
36329343 |
T |
|
| Q |
481 |
tgccatgttctcaagcgcaaacgcccctgcacc |
513 |
Q |
| |
|
||||||| |||||| ||||||||||||||||| |
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| T |
36329342 |
tgccatgctctcaaaagcaaacgcccctgcacc |
36329310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 693 - 797
Target Start/End: Complemental strand, 36329192 - 36329088
Alignment:
| Q |
693 |
taaagtacctagtatgaccaaagaaactttcattcccccatgtttatgtctcacagctcttcttcctttccaatcaacttttccatcaactagctcttct |
792 |
Q |
| |
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|||| ||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
36329192 |
taaattacctagtacgagcaaagaaactttcattcccccatgtttgtgtctcacagctcttcttcctctccaatcaacttttccatcaactaactcttct |
36329093 |
T |
|
| Q |
793 |
tcctg |
797 |
Q |
| |
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||||| |
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| T |
36329092 |
tcctg |
36329088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 284 - 437
Target Start/End: Complemental strand, 5458463 - 5458310
Alignment:
| Q |
284 |
cttaccaaaaactcaaagcagccagaaataagaacggatttgtgtcttccaatccatgtatcagcaaaaacggctacgacaatggagagcatgtaacaaa |
383 |
Q |
| |
|
|||||||||||||| ||| ||||||||| | ||| ||||||| ||| ||||||||||||||||||| | || || | ||| ||||| ||||||| | |
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| T |
5458463 |
cttaccaaaaactcgaagaagccagaaaataaaacagatttgtatctaccaatccatgtatcagcaacgatagccaccaaaatagagagaatgtaactga |
5458364 |
T |
|
| Q |
384 |
cccccatgaagttggttaccatgttagctgcatctgctagttcataatgcatga |
437 |
Q |
| |
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| T |
5458363 |
cacccatatagttggtgagcatgttagcagcatcttctagttgataatgcatga |
5458310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 17438840 - 17438909
Alignment:
| Q |
154 |
taaattatgccccaccacctcccttgatttgtgggaagcatgaaatttgattggaaaatagattttcgct |
223 |
Q |
| |
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|||||||||||||||||||||||||||||||||| || | ||||||| |||||| ||| |||| ||||| |
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| T |
17438840 |
taaattatgccccaccacctcccttgatttgtggccagaaagaaatttaattggacaattgattatcgct |
17438909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 11168124 - 11168178
Alignment:
| Q |
154 |
taaattatgccccaccacctcccttgatttgtgggaagcatgaaatttgattgga |
208 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| || | |||||||||||||| |
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|
| T |
11168124 |
taaaatatgccccaccacctcccttgatttgtggtcagaaagaaatttgattgga |
11168178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 262
Target Start/End: Original strand, 24605997 - 24606063
Alignment:
| Q |
195 |
gaaatttgattggaaaatagattttcgctggcaattttgggacaacatgtgtcgggataaataacatt |
262 |
Q |
| |
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||||||||||| |||||| ||||||| || |||| ||||||||||||||| | |||||||||| |||| |
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| T |
24605997 |
gaaatttgattagaaaatggattttcactagcaa-tttgggacaacatgtattgggataaatagcatt |
24606063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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