View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4303_low_10 (Length: 331)
Name: NF4303_low_10
Description: NF4303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4303_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 17 - 318
Target Start/End: Complemental strand, 6350086 - 6349785
Alignment:
| Q |
17 |
agagaaattaaatcacattaacaccaaaatctatatatttgacataactaaggttgataagatatttgacatataaatagttaaaattgtctgaagatca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6350086 |
agagaaattaaatcacattaacaccaaaatctatatatttgacataactaaggttgataagatatttgacatataaatagttaaaattgtctgaagatca |
6349987 |
T |
|
| Q |
117 |
taaaatcataaagcatgaagatagacaagccagcaaatattgtaaatttcacagcatgttttgctatgtcactaataaatgtgcgcgtttcaagaattta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6349986 |
taaaatcataaagcatgaagatagacaagccagcaaatattgtaaatttcacagcatgttttgctatgtcactaataaatgtgcgcgtttcaagaattta |
6349887 |
T |
|
| Q |
217 |
attcaaatatatttgatggaaggaagattaaaattttctaacaaaccaaagtaagatatgaatgtaaacacagaaaacctttgaacaagggatgtctcat |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
6349886 |
attcaaatatatttgatggaaggaagattaaaattttctaacaaaccaaagtaaggtatgaatgtaaacacagaacccctttgaacaagggatttctcat |
6349787 |
T |
|
| Q |
317 |
gt |
318 |
Q |
| |
|
|| |
|
|
| T |
6349786 |
gt |
6349785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University