View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4303_low_15 (Length: 289)
Name: NF4303_low_15
Description: NF4303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4303_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 23672545 - 23672285
Alignment:
| Q |
18 |
agtcattactcaaattgtttgattggcattctacctttgatacgtactttaaaggagtagatcatcagtcatattgtttcatataggacacaagtagaga |
117 |
Q |
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| T |
23672545 |
agtcattactcaaattgtttgattggcattctacctttgatacgtactttaatggagtagatcatcagtcatattgtttcatataggacacaggtagaga |
23672446 |
T |
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| Q |
118 |
tggatagtactatttttcaaagacactaacaaagtttaaatatgtaaaaactgaatgaatagttattagttagttacaagacattaacgtctag-nnnnn |
216 |
Q |
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| T |
23672445 |
tggatagtactatttttcaaagacactaac--agtttaaatatgtaaaaactgaatgaatagttattagttagttacaagacattaacatctagtttttt |
23672348 |
T |
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| Q |
217 |
nnnncttcttacttttattaaaatgacactgacaattttctttatgcgaatttgaacttcatc |
279 |
Q |
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| T |
23672347 |
tttttttcttacttttattaaaatgacactgacaatcttctttatgcgaatttgaacttcatc |
23672285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 35 - 179
Target Start/End: Complemental strand, 23646527 - 23646386
Alignment:
| Q |
35 |
tttgattggcattctacctttgatacgtactttaaaggagtagatcatcagtcatattgtttcatataggacacaagtagagatggatagtactattttt |
134 |
Q |
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| T |
23646527 |
tttgattgacattctacctttgatacgtaccgtaaaggagtagatca---gacatattgtttcatataggacacaagtagaaatggacagtactattttt |
23646431 |
T |
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| Q |
135 |
caaagacactaacaaagtttaaatatgtaaaaactgaatgaatag |
179 |
Q |
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| T |
23646430 |
taaagacactaacaaagtttagatatgtaaacactgaatgaatag |
23646386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 211
Target Start/End: Complemental strand, 23614259 - 23614188
Alignment:
| Q |
138 |
agacactaacaaagtttaaatatgtaaaaactgaatgaatagttattagttagttacaagacattaacgtctag |
211 |
Q |
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|||||||||||||||||| ||||||||| | ||||||||||| | | ||| ||||||||||||||| ||||| |
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| T |
23614259 |
agacactaacaaagtttagatatgtaaacattgaatgaatag--agttattaattacaagacattaacatctag |
23614188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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