View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4303_low_16 (Length: 203)

Name: NF4303_low_16
Description: NF4303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4303_low_16
NF4303_low_16
[»] chr3 (6 HSPs)
chr3 (1-52)||(42072140-42072191)
chr3 (5-45)||(4392640-4392680)
chr3 (5-52)||(47823362-47823409)
chr3 (8-51)||(50646086-50646129)
chr3 (8-40)||(8817303-8817335)
chr3 (7-51)||(48903447-48903491)
[»] chr8 (8 HSPs)
chr8 (8-52)||(15750276-15750320)
chr8 (7-52)||(5295353-5295398)
chr8 (1-52)||(34796628-34796679)
chr8 (1-52)||(40399824-40399875)
chr8 (9-52)||(42179258-42179301)
chr8 (8-62)||(2375783-2375837)
chr8 (8-52)||(515064-515108)
chr8 (16-52)||(13367897-13367933)
[»] chr6 (9 HSPs)
chr6 (8-52)||(31233568-31233612)
chr6 (8-51)||(32619772-32619815)
chr6 (10-50)||(3847816-3847856)
chr6 (8-51)||(13011295-13011338)
chr6 (8-51)||(13503791-13503834)
chr6 (10-52)||(12459265-12459307)
chr6 (1-46)||(8957923-8957968)
chr6 (1-46)||(8961389-8961434)
chr6 (8-52)||(17552193-17552237)
[»] chr1 (8 HSPs)
chr1 (8-52)||(26595014-26595058)
chr1 (8-51)||(52707004-52707047)
chr1 (8-50)||(16757145-16757187)
chr1 (8-52)||(25560817-25560861)
chr1 (1-52)||(29568051-29568102)
chr1 (1-52)||(51244780-51244831)
chr1 (14-52)||(5225774-5225812)
chr1 (10-52)||(8989584-8989626)
[»] chr2 (6 HSPs)
chr2 (1-52)||(19164509-19164560)
chr2 (8-51)||(37038717-37038760)
chr2 (1-52)||(43971931-43971982)
chr2 (7-40)||(7644721-7644754)
chr2 (7-52)||(7872725-7872770)
chr2 (10-51)||(44712181-44712222)
[»] chr5 (8 HSPs)
chr5 (10-52)||(4911056-4911098)
chr5 (1-51)||(13974429-13974479)
chr5 (5-51)||(28591572-28591618)
chr5 (1-52)||(1309305-1309356)
chr5 (8-51)||(11977750-11977793)
chr5 (8-52)||(21634273-21634317)
chr5 (8-52)||(21642520-21642564)
chr5 (8-52)||(34534521-34534565)
[»] chr7 (6 HSPs)
chr7 (6-51)||(45499769-45499814)
chr7 (8-52)||(4268815-4268859)
chr7 (5-52)||(25055939-25055986)
chr7 (10-52)||(4268896-4268938)
chr7 (8-40)||(6563375-6563407)
chr7 (8-52)||(28289377-28289421)
[»] chr4 (7 HSPs)
chr4 (5-45)||(18052645-18052685)
chr4 (8-52)||(19451155-19451199)
chr4 (8-52)||(30261421-30261465)
chr4 (16-52)||(44868203-44868239)
chr4 (7-52)||(6991213-6991258)
chr4 (10-51)||(47458338-47458379)
chr4 (12-52)||(41496371-41496411)
[»] scaffold0026 (1 HSPs)
scaffold0026 (12-52)||(4307-4347)


Alignment Details
Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 42072140 - 42072191
Alignment:
Q  1 taacacatctctttcttttaattaatatatttcttaatatgagtgtaaaaac 52  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  42072140 taacatatctctttcttttaattaatatatttcttaatatgtgtgtaaaaac 42072191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 4392640 - 4392680
Alignment:
Q  5 acatctctttcttttaattaatatatttcttaatatgagtg 45  Q
    |||||||||||||||||||||| ||||||||||||| ||||    
T  4392640 acatctctttcttttaattaatgtatttcttaatataagtg 4392680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 47823409 - 47823362
Alignment:
Q  5 acatctctttcttttaattaatatatttcttaatatgagtgtaaaaac 52  Q
    ||||||||||||||||||||||| |||| |||||||| || |||||||    
T  47823409 acatctctttcttttaattaatacattttttaatatgtgtataaaaac 47823362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 50646129 - 50646086
Alignment:
Q  8 tctctttcttttaattaatatatttcttaatatgagtgtaaaaa 51  Q
    |||||||||||||||||||| |||| |||||||| |||||||||    
T  50646129 tctctttcttttaattaatacattttttaatatgtgtgtaaaaa 50646086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 8817303 - 8817335
Alignment:
Q  8 tctctttcttttaattaatatatttcttaatat 40  Q
    |||||||||||||||||||| ||||||||||||    
T  8817303 tctctttcttttaattaatacatttcttaatat 8817335  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 48903447 - 48903491
Alignment:
Q  7 atctctttcttttaattaatatatttcttaatatgagtgtaaaaa 51  Q
    ||||||||||||||||||||  |||||||||||||  ||||||||    
T  48903447 atctctttcttttaattaatgcatttcttaatatgtatgtaaaaa 48903491  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 15750320 - 15750276
Alignment:
Q  8 tctctttcttttaattaatatatttcttaatatgagtgtaaaaac 52  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||    
T  15750320 tctctttcttttaattaatgtatttcttaatatgtgtgtaaaaac 15750276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 5295398 - 5295353
Alignment:
Q  7 atctctttcttttaattaatatatttcttaatatgagtgtaaaaac 52  Q
    |||||||||||||||| |||| ||||||||||||| ||||||||||    
T  5295398 atctctttcttttaatcaatacatttcttaatatgtgtgtaaaaac 5295353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 34796679 - 34796628
Alignment:
Q  1 taacacatctctttcttttaattaatatatttcttaatatgagtgtaaaaac 52  Q
    ||||| ||||||||||||||||||||  ||||||||| ||| ||||||||||    
T  34796679 taacatatctctttcttttaattaatgcatttcttaacatgtgtgtaaaaac 34796628  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 40399875 - 40399824
Alignment:
Q  1 taacacatctctttcttttaattaatatatttcttaatatgagtgtaaaaac 52  Q
    ||||| ||||||||||||||||||||  ||||||||||||  ||||||||||    
T  40399875 taacatatctctttcttttaattaatgcatttcttaatatatgtgtaaaaac 40399824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 42179258 - 42179301
Alignment:
Q  9 ctctttcttttaattaatatatttcttaatatgagtgtaaaaac 52  Q
    |||||||||||||||||| ||||| |||||||| ||||||||||    
T  42179258 ctctttcttttaattaatgtattttttaatatgtgtgtaaaaac 42179301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 2375837 - 2375783
Alignment:
Q  8 tctctttcttttaattaatatatttcttaatatgagtgtaaaaacgacattcatt 62  Q
    |||||||||||||||||||  |||| |||||||  |||||||||||| |||||||    
T  2375837 tctctttcttttaattaatgcatttattaatatatgtgtaaaaacgaaattcatt 2375783  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 515064 - 515108
Alignment:
Q  8 tctctttcttttaattaatatatttcttaatatgagtgtaaaaac 52  Q
    ||||||| |||||||||||| ||||||||||||| || |||||||    
T  515064 tctctttattttaattaatacatttcttaatatgtgtataaaaac 515108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 13367933 - 13367897
Alignment:
Q  16 ttttaattaatatatttcttaatatgagtgtaaaaac 52  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  13367933 ttttaattaatacatttcttaatatgtgtgtaaaaac 13367897  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 31233612 - 31233568
Alignment:
Q  8 tctctttcttttaattaatatatttcttaatatgagtgtaaaaac 52  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||    
T  31233612 tctctttcttttaattaatgtatttcttaatatgtgtgtaaaaac 31233568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 32619815 - 32619772
Alignment:
Q  8 tctctttcttttaattaatatatttcttaatatgagtgtaaaaa 51  Q
    ||||||||||||||||||| |||||||||||||| |||||||||    
T  32619815 tctctttcttttaattaatgtatttcttaatatgtgtgtaaaaa 32619772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 3847816 - 3847856
Alignment:
Q  10 tctttcttttaattaatatatttcttaatatgagtgtaaaa 50  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  3847816 tctttcttttaattaatttatttcttaatatgcgtgtaaaa 3847856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 13011338 - 13011295
Alignment:
Q  8 tctctttcttttaattaatatatttcttaatatgagtgtaaaaa 51  Q
    |||||||||||||||||||  ||||||||||||| |||||||||    
T  13011338 tctctttcttttaattaatgcatttcttaatatgtgtgtaaaaa 13011295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 13503834 - 13503791
Alignment:
Q  8 tctctttcttttaattaatatatttcttaatatgagtgtaaaaa 51  Q
    |||||||||||||||||||  ||||||||||||| |||||||||    
T  13503834 tctctttcttttaattaatgcatttcttaatatgtgtgtaaaaa 13503791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 12459307 - 12459265
Alignment:
Q  10 tctttcttttaattaatatatttcttaatatgagtgtaaaaac 52  Q
    ||||||||||||||||| ||||||||| |||| ||||||||||    
T  12459307 tctttcttttaattaatgtatttcttagtatgtgtgtaaaaac 12459265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 8957923 - 8957968
Alignment:
Q  1 taacacatctctttcttttaattaatatatttcttaatatgagtgt 46  Q
    ||||| ||||||||| |||||||||| |||||||||||||| ||||    
T  8957923 taacatatctctttcatttaattaatgtatttcttaatatgtgtgt 8957968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 8961434 - 8961389
Alignment:
Q  1 taacacatctctttcttttaattaatatatttcttaatatgagtgt 46  Q
    ||||| ||||||||| |||||||||| |||||||||||||| ||||    
T  8961434 taacatatctctttcatttaattaatgtatttcttaatatgtgtgt 8961389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 17552237 - 17552193
Alignment:
Q  8 tctctttcttttaattaatatatttcttaatatgagtgtaaaaac 52  Q
    ||||||||||||||||||| ||||| ||||| || ||||||||||    
T  17552237 tctctttcttttaattaatgtattttttaatctgtgtgtaaaaac 17552193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 26595058 - 26595014
Alignment:
Q  8 tctctttcttttaattaatatatttcttaatatgagtgtaaaaac 52  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||    
T  26595058 tctctttcttttaattaatgtatttcttaatatgtgtgtaaaaac 26595014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 52707004 - 52707047
Alignment:
Q  8 tctctttcttttaattaatatatttcttaatatgagtgtaaaaa 51  Q
    ||||||||||||| |||||||||||||||||||| |||||||||    
T  52707004 tctctttcttttagttaatatatttcttaatatgtgtgtaaaaa 52707047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 16757187 - 16757145
Alignment:
Q  8 tctctttcttttaattaatatatttcttaatatgagtgtaaaa 50  Q
    ||||||||||||||||||| |||||||||||||| ||||||||    
T  16757187 tctctttcttttaattaatgtatttcttaatatgtgtgtaaaa 16757145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 25560861 - 25560817
Alignment:
Q  8 tctctttcttttaattaatatatttcttaatatgagtgtaaaaac 52  Q
    ||||||||||||||||||| |||||||||||||  ||||||||||    
T  25560861 tctctttcttttaattaatgtatttcttaatatatgtgtaaaaac 25560817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 29568051 - 29568102
Alignment:
Q  1 taacacatctctttcttttaattaatatatttcttaatatgagtgtaaaaac 52  Q
    ||||| || |||||||||||||||||  ||||||||||||| ||||||||||    
T  29568051 taacatatttctttcttttaattaatgcatttcttaatatgtgtgtaaaaac 29568102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 51244831 - 51244780
Alignment:
Q  1 taacacatctctttcttttaattaatatatttcttaatatgagtgtaaaaac 52  Q
    ||||| |||||||||||||||||||| ||||| |||||||  ||||||||||    
T  51244831 taacatatctctttcttttaattaatttattttttaatatatgtgtaaaaac 51244780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 5225812 - 5225774
Alignment:
Q  14 tcttttaattaatatatttcttaatatgagtgtaaaaac 52  Q
    |||||||||||||||||||||||||||| | ||||||||    
T  5225812 tcttttaattaatatatttcttaatatgtgcgtaaaaac 5225774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 8989626 - 8989584
Alignment:
Q  10 tctttcttttaattaatatatttcttaatatgagtgtaaaaac 52  Q
    |||||||||||||||||  ||||||||||||| ||||||||||    
T  8989626 tctttcttttaattaatgcatttcttaatatgtgtgtaaaaac 8989584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 19164509 - 19164560
Alignment:
Q  1 taacacatctctttcttttaattaatatatttcttaatatgagtgtaaaaac 52  Q
    ||||| ||||||||||||||||||||| ||||||||||||  ||||||||||    
T  19164509 taacatatctctttcttttaattaataaatttcttaatatatgtgtaaaaac 19164560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 37038760 - 37038717
Alignment:
Q  8 tctctttcttttaattaatatatttcttaatatgagtgtaaaaa 51  Q
    ||||||||||||||||||| |||||||||||||| |||||||||    
T  37038760 tctctttcttttaattaatgtatttcttaatatgtgtgtaaaaa 37038717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 43971931 - 43971982
Alignment:
Q  1 taacacatctctttcttttaattaatatatttcttaatatgagtgtaaaaac 52  Q
    ||||| ||||||||||||| ||||||  ||||||||||||| ||||||||||    
T  43971931 taacatatctctttcttttgattaatgcatttcttaatatgtgtgtaaaaac 43971982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 7644721 - 7644754
Alignment:
Q  7 atctctttcttttaattaatatatttcttaatat 40  Q
    ||||||||||||||||||||| ||||||||||||    
T  7644721 atctctttcttttaattaatacatttcttaatat 7644754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 7872770 - 7872725
Alignment:
Q  7 atctctttcttttaattaatatatttcttaatatgagtgtaaaaac 52  Q
    ||||||||||||||||||||  |||| |||||||| ||||||||||    
T  7872770 atctctttcttttaattaatgaattttttaatatgtgtgtaaaaac 7872725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 44712222 - 44712181
Alignment:
Q  10 tctttcttttaattaatatatttcttaatatgagtgtaaaaa 51  Q
    ||||||||||||||||| ||||| |||||||| |||||||||    
T  44712222 tctttcttttaattaatgtattttttaatatgtgtgtaaaaa 44712181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 4911098 - 4911056
Alignment:
Q  10 tctttcttttaattaatatatttcttaatatgagtgtaaaaac 52  Q
    ||||||||||||||||| |||||||||||||| ||||||||||    
T  4911098 tctttcttttaattaatgtatttcttaatatgtgtgtaaaaac 4911056  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 13974429 - 13974479
Alignment:
Q  1 taacacatctctttcttttaattaatatatttcttaatatgagtgtaaaaa 51  Q
    |||||| |||||||||||||||||||  ||||||||||||| |||||||||    
T  13974429 taacacctctctttcttttaattaatgcatttcttaatatgtgtgtaaaaa 13974479  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 28591618 - 28591572
Alignment:
Q  5 acatctctttcttttaattaatatatttcttaatatgagtgtaaaaa 51  Q
    |||||||||||||||||||||| ||||| |||||||| |||||||||    
T  28591618 acatctctttcttttaattaatgtatttattaatatgtgtgtaaaaa 28591572  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 1309356 - 1309305
Alignment:
Q  1 taacacatctctttcttttaattaatatatttcttaatatgagtgtaaaaac 52  Q
    ||||| |||| |||||||||||||||  ||||||||||||| ||||||||||    
T  1309356 taacatatctatttcttttaattaatgcatttcttaatatgtgtgtaaaaac 1309305  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 11977750 - 11977793
Alignment:
Q  8 tctctttcttttaattaatatatttcttaatatgagtgtaaaaa 51  Q
    |||||||||||||||||||  ||||||||||||| |||||||||    
T  11977750 tctctttcttttaattaatgcatttcttaatatgtgtgtaaaaa 11977793  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 21634273 - 21634317
Alignment:
Q  8 tctctttcttttaattaatatatttcttaatatgagtgtaaaaac 52  Q
    ||||||| |||||||||||  ||||||||||||| ||||||||||    
T  21634273 tctctttattttaattaatgcatttcttaatatgtgtgtaaaaac 21634317  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 21642520 - 21642564
Alignment:
Q  8 tctctttcttttaattaatatatttcttaatatgagtgtaaaaac 52  Q
    ||||||| |||||||||||  ||||||||||||| ||||||||||    
T  21642520 tctctttattttaattaatgcatttcttaatatgtgtgtaaaaac 21642564  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 34534521 - 34534565
Alignment:
Q  8 tctctttcttttaattaatatatttcttaatatgagtgtaaaaac 52  Q
    |||||||||||||||||||  |||| |||||||| ||||||||||    
T  34534521 tctctttcttttaattaatgcattttttaatatgtgtgtaaaaac 34534565  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 45499814 - 45499769
Alignment:
Q  6 catctctttcttttaattaatatatttcttaatatgagtgtaaaaa 51  Q
    ||||||||| ||||||||||| |||||||||||||| |||||||||    
T  45499814 catctctttattttaattaatgtatttcttaatatgtgtgtaaaaa 45499769  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 4268815 - 4268859
Alignment:
Q  8 tctctttcttttaattaatatatttcttaatatgagtgtaaaaac 52  Q
    |||||||||||||||||||  ||||||||||||| ||||||||||    
T  4268815 tctctttcttttaattaatgcatttcttaatatgtgtgtaaaaac 4268859  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 25055939 - 25055986
Alignment:
Q  5 acatctctttcttttaattaatatatttcttaatatgagtgtaaaaac 52  Q
    ||||||||||||||||||||||| |||| |||||||  ||||||||||    
T  25055939 acatctctttcttttaattaatacattttttaatatatgtgtaaaaac 25055986  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 4268896 - 4268938
Alignment:
Q  10 tctttcttttaattaatatatttcttaatatgagtgtaaaaac 52  Q
    |||||||||||||||||  ||||||||||||| ||||||||||    
T  4268896 tctttcttttaattaatgcatttcttaatatgtgtgtaaaaac 4268938  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 6563407 - 6563375
Alignment:
Q  8 tctctttcttttaattaatatatttcttaatat 40  Q
    ||||||||||||||||||| |||||||||||||    
T  6563407 tctctttcttttaattaatgtatttcttaatat 6563375  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 28289377 - 28289421
Alignment:
Q  8 tctctttcttttaattaatatatttcttaatatgagtgtaaaaac 52  Q
    ||||||| ||||||||||| ||||| |||||||| ||||||||||    
T  28289377 tctctttattttaattaatgtatttattaatatgtgtgtaaaaac 28289421  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 18052685 - 18052645
Alignment:
Q  5 acatctctttcttttaattaatatatttcttaatatgagtg 45  Q
    |||||||||||||||||||||| ||||||||||||| ||||    
T  18052685 acatctctttcttttaattaatgtatttcttaatataagtg 18052645  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 19451199 - 19451155
Alignment:
Q  8 tctctttcttttaattaatatatttcttaatatgagtgtaaaaac 52  Q
    |||||||||||||||||||  ||||||||||||| ||||||||||    
T  19451199 tctctttcttttaattaatgcatttcttaatatgtgtgtaaaaac 19451155  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 30261421 - 30261465
Alignment:
Q  8 tctctttcttttaattaatatatttcttaatatgagtgtaaaaac 52  Q
    ||||||||||| ||||||| |||||||||||||| ||||||||||    
T  30261421 tctctttctttaaattaatgtatttcttaatatgtgtgtaaaaac 30261465  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 44868239 - 44868203
Alignment:
Q  16 ttttaattaatatatttcttaatatgagtgtaaaaac 52  Q
    |||||||||||||||||||||||||| ||||||||||    
T  44868239 ttttaattaatatatttcttaatatgtgtgtaaaaac 44868203  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 6991258 - 6991213
Alignment:
Q  7 atctctttcttttaattaatatatttcttaatatgagtgtaaaaac 52  Q
    ||||||||||||||||||||  ||||||||||||| || |||||||    
T  6991258 atctctttcttttaattaatgcatttcttaatatgtgtataaaaac 6991213  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 47458379 - 47458338
Alignment:
Q  10 tctttcttttaattaatatatttcttaatatgagtgtaaaaa 51  Q
    ||||||||||||||||| ||||| |||||||| |||||||||    
T  47458379 tctttcttttaattaatgtattttttaatatgtgtgtaaaaa 47458338  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 41496371 - 41496411
Alignment:
Q  12 tttcttttaattaatatatttcttaatatgagtgtaaaaac 52  Q
    |||||||||||||||| |||| |||||||| ||||||||||    
T  41496371 tttcttttaattaatacattttttaatatgtgtgtaaaaac 41496411  T

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Target: scaffold0026 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 4307 - 4347
Alignment:
Q  12 tttcttttaattaatatatttcttaatatgagtgtaaaaac 52  Q
    ||||||||  |||||||||||||||||||| ||||||||||    
T  4307 tttcttttctttaatatatttcttaatatgtgtgtaaaaac 4347  T

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