View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4303_low_2 (Length: 544)

Name: NF4303_low_2
Description: NF4303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4303_low_2
NF4303_low_2
[»] chr4 (9 HSPs)
chr4 (274-422)||(11841895-11842045)
chr4 (317-417)||(11802045-11802145)
chr4 (320-422)||(11856335-11856437)
chr4 (317-405)||(11431212-11431300)
chr4 (317-405)||(11564166-11564254)
chr4 (346-402)||(11808050-11808106)
chr4 (472-515)||(47119012-47119055)
chr4 (473-513)||(29778776-29778816)
chr4 (477-513)||(30207620-30207656)
[»] chr2 (6 HSPs)
chr2 (473-518)||(11513879-11513924)
chr2 (477-518)||(5043604-5043645)
chr2 (472-515)||(18066108-18066151)
chr2 (473-515)||(25800810-25800852)
chr2 (479-515)||(17952748-17952784)
chr2 (479-515)||(39983329-39983365)
[»] chr8 (8 HSPs)
chr8 (473-515)||(1561255-1561297)
chr8 (473-515)||(2091742-2091784)
chr8 (473-515)||(9834836-9834878)
chr8 (474-514)||(7514560-7514600)
chr8 (474-518)||(31884576-31884620)
chr8 (473-515)||(34770873-34770915)
chr8 (473-513)||(7645959-7645999)
chr8 (475-515)||(41208868-41208908)
[»] chr1 (11 HSPs)
chr1 (480-518)||(17422982-17423020)
chr1 (473-515)||(25006081-25006123)
chr1 (473-513)||(28467356-28467396)
chr1 (473-508)||(7218128-7218163)
chr1 (476-515)||(25005844-25005883)
chr1 (473-508)||(30371129-30371164)
chr1 (477-515)||(12564921-12564959)
chr1 (473-515)||(17269231-17269273)
chr1 (477-518)||(8130421-8130462)
chr1 (473-514)||(27738228-27738269)
chr1 (483-520)||(45205059-45205096)
[»] chr7 (3 HSPs)
chr7 (473-515)||(18516296-18516338)
chr7 (473-515)||(47046155-47046197)
chr7 (473-518)||(1417245-1417290)
[»] chr6 (6 HSPs)
chr6 (473-515)||(4006695-4006737)
chr6 (474-508)||(9668039-9668073)
chr6 (473-518)||(5623137-5623182)
chr6 (473-509)||(5550113-5550149)
chr6 (472-508)||(7485122-7485158)
chr6 (479-515)||(32917205-32917241)
[»] chr3 (10 HSPs)
chr3 (476-514)||(41057022-41057060)
chr3 (471-508)||(10132772-10132809)
chr3 (470-515)||(22214706-22214751)
chr3 (479-520)||(27792859-27792900)
chr3 (477-514)||(28306143-28306180)
chr3 (477-518)||(43875633-43875674)
chr3 (472-508)||(10101530-10101566)
chr3 (472-508)||(10212455-10212491)
chr3 (472-508)||(10357413-10357449)
chr3 (473-509)||(51197789-51197825)
[»] chr5 (4 HSPs)
chr5 (473-514)||(19138767-19138808)
chr5 (474-514)||(6587155-6587195)
chr5 (480-508)||(9703294-9703322)
chr5 (480-508)||(39823175-39823203)


Alignment Details
Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 274 - 422
Target Start/End: Original strand, 11841895 - 11842045
Alignment:
Q  274 cctaaagaagtaaaagaaaga--taagtacttgatgtgtgaggacagcaataactttatcaccagctttaaaatccttgacttgtggtccaacatctact 371  Q
    ||||| ||||| |||||||||  |||||||||||||||||||   |||||||||||| || |||| ||| ||||||||||||||||||||||| |||||     
T  11841895 cctaaggaagtgaaagaaagagataagtacttgatgtgtgagtttagcaataactttgtcgccagatttgaaatccttgacttgtggtccaacctctacc 11841994  T
Q  372 acctctcctgctacatcagtgcctgaatcaaagtaccaagatcaaaggaat 422  Q
    |||||||| ||||||||||||||||||||||||| |||||| |||||||||    
T  11841995 acctctccagctacatcagtgcctgaatcaaagtcccaagagcaaaggaat 11842045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 317 - 417
Target Start/End: Original strand, 11802045 - 11802145
Alignment:
Q  317 agcaataactttatcaccagctttaaaatccttgacttgtggtccaacatctactacctctcctgctacatcagtgcctgaatcaaagtaccaagatcaa 416  Q
    ||||||||||||||| ||| ||||||||||||||||||||  |||||  ||||| |||||||||||||||||||||||||||||||| | |||||| |||    
T  11802045 agcaataactttatctccaactttaaaatccttgacttgttctccaatctctacaacctctcctgctacatcagtgcctgaatcaaattcccaagagcaa 11802144  T
Q  417 a 417  Q
    |    
T  11802145 a 11802145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 320 - 422
Target Start/End: Original strand, 11856335 - 11856437
Alignment:
Q  320 aataactttatcaccagctttaaaatccttgacttgtggtccaacatctactacctctcctgctacatcagtgcctgaatcaaagtaccaagatcaaagg 419  Q
    ||||||||| || ||| |||||||||| |||||||| |||||||| ||||| |||||||||| ||||||||||||||||||||||| |||||| |||| |    
T  11856335 aataactttgtctccaactttaaaatcgttgacttgcggtccaacctctacaacctctcctgatacatcagtgcctgaatcaaagtcccaagagcaaaag 11856434  T
Q  420 aat 422  Q
    |||    
T  11856435 aat 11856437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 317 - 405
Target Start/End: Original strand, 11431212 - 11431300
Alignment:
Q  317 agcaataactttatcaccagctttaaaatccttgacttgtggtccaacatctactacctctcctgctacatcagtgcctgaatcaaagt 405  Q
    |||||||||||| || ||| |||| ||||| || ||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||    
T  11431212 agcaataactttgtctccaactttgaaatctttaacttgtgatccaaaatctactacctctcctgctacatcggtgcctgaatcaaagt 11431300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 317 - 405
Target Start/End: Complemental strand, 11564254 - 11564166
Alignment:
Q  317 agcaataactttatcaccagctttaaaatccttgacttgtggtccaacatctactacctctcctgctacatcagtgcctgaatcaaagt 405  Q
    |||||||||||| || ||| |||| ||||| || ||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||    
T  11564254 agcaataactttgtctccaactttgaaatctttaacttgtgatccaaaatctactacctctcctgctacatcggtgcctgaatcaaagt 11564166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 346 - 402
Target Start/End: Original strand, 11808050 - 11808106
Alignment:
Q  346 ccttgacttgtggtccaacatctactacctctcctgctacatcagtgcctgaatcaa 402  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11808050 ccttgacttgtggtccaacttctactacctctcctgctacatcagtgcctgaatcaa 11808106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 472 - 515
Target Start/End: Complemental strand, 47119055 - 47119012
Alignment:
Q  472 taaattgttttcatataagctacaagttgttttcatatgctatc 515  Q
    |||||||||||||||||||||| ||||||| |||||||||||||    
T  47119055 taaattgttttcatataagctataagttgtattcatatgctatc 47119012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 473 - 513
Target Start/End: Original strand, 29778776 - 29778816
Alignment:
Q  473 aaattgttttcatataagctacaagttgttttcatatgcta 513  Q
    ||||||||||||||||||||  |||||||||||||| ||||    
T  29778776 aaattgttttcatataagctgtaagttgttttcataagcta 29778816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 477 - 513
Target Start/End: Complemental strand, 30207656 - 30207620
Alignment:
Q  477 tgttttcatataagctacaagttgttttcatatgcta 513  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  30207656 tgttttcatataagctataagttgttttcataagcta 30207620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 473 - 518
Target Start/End: Original strand, 11513879 - 11513924
Alignment:
Q  473 aaattgttttcatataagctacaagttgttttcatatgctatcatg 518  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||    
T  11513879 aaattgttttcatataagctataagttgttttcataagctatcatg 11513924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 477 - 518
Target Start/End: Complemental strand, 5043645 - 5043604
Alignment:
Q  477 tgttttcatataagctacaagttgttttcatatgctatcatg 518  Q
    ||||||||||||||||| |||||||||||||| |||||||||    
T  5043645 tgttttcatataagctagaagttgttttcataagctatcatg 5043604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 472 - 515
Target Start/End: Original strand, 18066108 - 18066151
Alignment:
Q  472 taaattgttttcatataagctacaagttgttttcatatgctatc 515  Q
    |||||||||||||||||||||| ||| |||||||||| ||||||    
T  18066108 taaattgttttcatataagctataagctgttttcataagctatc 18066151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 515
Target Start/End: Original strand, 25800810 - 25800852
Alignment:
Q  473 aaattgttttcatataagctacaagttgttttcatatgctatc 515  Q
    ||||||||||||||||||||| ||| |||||||||| ||||||    
T  25800810 aaattgttttcatataagctataagctgttttcataagctatc 25800852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 479 - 515
Target Start/End: Complemental strand, 17952784 - 17952748
Alignment:
Q  479 ttttcatataagctacaagttgttttcatatgctatc 515  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  17952784 ttttcatataagctacaagatgttttcataagctatc 17952748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 479 - 515
Target Start/End: Original strand, 39983329 - 39983365
Alignment:
Q  479 ttttcatataagctacaagttgttttcatatgctatc 515  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  39983329 ttttcatataagctataagttgttttcataagctatc 39983365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 473 - 515
Target Start/End: Original strand, 1561255 - 1561297
Alignment:
Q  473 aaattgttttcatataagctacaagttgttttcatatgctatc 515  Q
    |||||||||| ||||||||||||||||||||||||| ||||||    
T  1561255 aaattgttttaatataagctacaagttgttttcataagctatc 1561297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 473 - 515
Target Start/End: Original strand, 2091742 - 2091784
Alignment:
Q  473 aaattgttttcatataagctacaagttgttttcatatgctatc 515  Q
    |||||||||| ||||||||||||||||||||||||| ||||||    
T  2091742 aaattgttttaatataagctacaagttgttttcataagctatc 2091784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 473 - 515
Target Start/End: Complemental strand, 9834878 - 9834836
Alignment:
Q  473 aaattgttttcatataagctacaagttgttttcatatgctatc 515  Q
    ||||||||||||||||||||| |||||||||||||| ||||||    
T  9834878 aaattgttttcatataagctataagttgttttcataagctatc 9834836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 474 - 514
Target Start/End: Original strand, 7514560 - 7514600
Alignment:
Q  474 aattgttttcatataagctacaagttgttttcatatgctat 514  Q
    |||||||||||||||||||||||| |||||||||| |||||    
T  7514560 aattgttttcatataagctacaagctgttttcataagctat 7514600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 474 - 518
Target Start/End: Original strand, 31884576 - 31884620
Alignment:
Q  474 aattgttttcatataagctacaagttgttttcatatgctatcatg 518  Q
    |||||||||||||||||||| || ||||||||||| |||||||||    
T  31884576 aattgttttcatataagctataaattgttttcataagctatcatg 31884620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 515
Target Start/End: Original strand, 34770873 - 34770915
Alignment:
Q  473 aaattgttttcatataagctacaagttgttttcatatgctatc 515  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||    
T  34770873 aaattgttttcatttaagctataagttgttttcataagctatc 34770915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 473 - 513
Target Start/End: Original strand, 7645959 - 7645999
Alignment:
Q  473 aaattgttttcatataagctacaagttgttttcatatgcta 513  Q
    ||||||||||||| ||||||| |||||||||||||| ||||    
T  7645959 aaattgttttcatgtaagctataagttgttttcataagcta 7645999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 475 - 515
Target Start/End: Original strand, 41208868 - 41208908
Alignment:
Q  475 attgttttcatataagctacaagttgttttcatatgctatc 515  Q
    ||||||||||||||||||| || ||||||||| ||||||||    
T  41208868 attgttttcatataagctataacttgttttcacatgctatc 41208908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 480 - 518
Target Start/End: Complemental strand, 17423020 - 17422982
Alignment:
Q  480 tttcatataagctacaagttgttttcatatgctatcatg 518  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  17423020 tttcatataagctataagttgttttcatatgctatcatg 17422982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 473 - 515
Target Start/End: Complemental strand, 25006123 - 25006081
Alignment:
Q  473 aaattgttttcatataagctacaagttgttttcatatgctatc 515  Q
    ||||||||||||||||||||| |||||||||||||| ||||||    
T  25006123 aaattgttttcatataagctataagttgttttcataagctatc 25006081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 473 - 513
Target Start/End: Complemental strand, 28467396 - 28467356
Alignment:
Q  473 aaattgttttcatataagctacaagttgttttcatatgcta 513  Q
    ||||| |||||||||||||||||||||||||||||| ||||    
T  28467396 aaattattttcatataagctacaagttgttttcataagcta 28467356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 473 - 508
Target Start/End: Complemental strand, 7218163 - 7218128
Alignment:
Q  473 aaattgttttcatataagctacaagttgttttcata 508  Q
    ||||||||||||||||||||| ||||||||||||||    
T  7218163 aaattgttttcatataagctataagttgttttcata 7218128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 476 - 515
Target Start/End: Complemental strand, 25005883 - 25005844
Alignment:
Q  476 ttgttttcatataagctacaagttgttttcatatgctatc 515  Q
    |||||||||||||||||| |||||||||||||| ||||||    
T  25005883 ttgttttcatataagctataagttgttttcataagctatc 25005844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 473 - 508
Target Start/End: Original strand, 30371129 - 30371164
Alignment:
Q  473 aaattgttttcatataagctacaagttgttttcata 508  Q
    ||||||||||||||||||||| ||||||||||||||    
T  30371129 aaattgttttcatataagctataagttgttttcata 30371164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 477 - 515
Target Start/End: Complemental strand, 12564959 - 12564921
Alignment:
Q  477 tgttttcatataagctacaagttgttttcatatgctatc 515  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  12564959 tgttttcatataagctataagttgttttcataagctatc 12564921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 515
Target Start/End: Original strand, 17269231 - 17269273
Alignment:
Q  473 aaattgttttcatataagctacaagttgttttcatatgctatc 515  Q
    ||||||||||||||||||| | |||||||||||||| ||||||    
T  17269231 aaattgttttcatataagcaataagttgttttcataagctatc 17269273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 518
Target Start/End: Original strand, 8130421 - 8130462
Alignment:
Q  477 tgttttcatataagctacaagttgttttcatatgctatcatg 518  Q
    |||||||| |||||||| |||||||||||||| |||||||||    
T  8130421 tgttttcacataagctataagttgttttcataagctatcatg 8130462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 514
Target Start/End: Complemental strand, 27738269 - 27738228
Alignment:
Q  473 aaattgttttcatataagctacaagttgttttcatatgctat 514  Q
    ||||||||||||||||||||| || ||||||||||| |||||    
T  27738269 aaattgttttcatataagctataatttgttttcataagctat 27738228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 520
Target Start/End: Original strand, 45205059 - 45205096
Alignment:
Q  483 catataagctacaagttgttttcatatgctatcatgta 520  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  45205059 catataagctagaagttgttttcataagctatcatgta 45205096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 515
Target Start/End: Complemental strand, 18516338 - 18516296
Alignment:
Q  473 aaattgttttcatataagctacaagttgttttcatatgctatc 515  Q
    ||||||| ||||||||||||| ||||||||| |||||||||||    
T  18516338 aaattgtgttcatataagctataagttgtttccatatgctatc 18516296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 515
Target Start/End: Complemental strand, 47046197 - 47046155
Alignment:
Q  473 aaattgttttcatataagctacaagttgttttcatatgctatc 515  Q
    |||||||||||||||||||| | ||||||||||||| ||||||    
T  47046197 aaattgttttcatataagctccgagttgttttcataagctatc 47046155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 518
Target Start/End: Original strand, 1417245 - 1417290
Alignment:
Q  473 aaattgttttcatataagctacaagttgttttcatatgctatcatg 518  Q
    ||||||||||||||||||| | |||||||||||||| |||| ||||    
T  1417245 aaattgttttcatataagcaataagttgttttcataagctagcatg 1417290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 515
Target Start/End: Original strand, 4006695 - 4006737
Alignment:
Q  473 aaattgttttcatataagctacaagttgttttcatatgctatc 515  Q
    |||||||||| |||||||||| |||||||||||||| ||||||    
T  4006695 aaattgtttttatataagctataagttgttttcataagctatc 4006737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 508
Target Start/End: Complemental strand, 9668073 - 9668039
Alignment:
Q  474 aattgttttcatataagctacaagttgttttcata 508  Q
    ||||||||||||||||||||||| |||||||||||    
T  9668073 aattgttttcatataagctacaatttgttttcata 9668039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 518
Target Start/End: Original strand, 5623137 - 5623182
Alignment:
Q  473 aaattgttttcatataagctacaagttgttttcatatgctatcatg 518  Q
    |||| |||||||||||| ||| |||||||||||||| |||||||||    
T  5623137 aaatagttttcatataaactataagttgttttcataagctatcatg 5623182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 473 - 509
Target Start/End: Original strand, 5550113 - 5550149
Alignment:
Q  473 aaattgttttcatataagctacaagttgttttcatat 509  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  5550113 aaattgttttcatataagctataagctgttttcatat 5550149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 472 - 508
Target Start/End: Complemental strand, 7485158 - 7485122
Alignment:
Q  472 taaattgttttcatataagctacaagttgttttcata 508  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  7485158 taaatttttttcatataagctataagttgttttcata 7485122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 479 - 515
Target Start/End: Original strand, 32917205 - 32917241
Alignment:
Q  479 ttttcatataagctacaagttgttttcatatgctatc 515  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  32917205 ttttcatataagctataagttgttttcatctgctatc 32917241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 476 - 514
Target Start/End: Original strand, 41057022 - 41057060
Alignment:
Q  476 ttgttttcatataagctacaagttgttttcatatgctat 514  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  41057022 ttgttttcatataagctataagttgttttcataagctat 41057060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 508
Target Start/End: Complemental strand, 10132809 - 10132772
Alignment:
Q  471 ataaattgttttcatataagctacaagttgttttcata 508  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  10132809 ataaattgtttttatataagatacaagttgttttcata 10132772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 515
Target Start/End: Complemental strand, 22214751 - 22214706
Alignment:
Q  470 tataaattgttttcatataagctacaagttgttttcatatgctatc 515  Q
    ||||| |||||||||||||| ||| |||||||||||||| ||||||    
T  22214751 tataagttgttttcatataacctataagttgttttcataagctatc 22214706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 520
Target Start/End: Original strand, 27792859 - 27792900
Alignment:
Q  479 ttttcatataagctacaagttgttttcatatgctatcatgta 520  Q
    |||||||||||||| |||||||||||||||  ||||||||||    
T  27792859 ttttcatataagctgcaagttgttttcataaactatcatgta 27792900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 514
Target Start/End: Original strand, 28306143 - 28306180
Alignment:
Q  477 tgttttcatataagctacaagttgttttcatatgctat 514  Q
    |||||||||||||| ||||||||||||||||| |||||    
T  28306143 tgttttcatataagttacaagttgttttcataagctat 28306180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 518
Target Start/End: Original strand, 43875633 - 43875674
Alignment:
Q  477 tgttttcatataagctacaagttgttttcatatgctatcatg 518  Q
    |||| |||||||||||| |||||||||||||| |||||||||    
T  43875633 tgttctcatataagctataagttgttttcataagctatcatg 43875674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 472 - 508
Target Start/End: Complemental strand, 10101566 - 10101530
Alignment:
Q  472 taaattgttttcatataagctacaagttgttttcata 508  Q
    ||||||||||||||||||| || ||||||||||||||    
T  10101566 taaattgttttcatataagataaaagttgttttcata 10101530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 472 - 508
Target Start/End: Complemental strand, 10212491 - 10212455
Alignment:
Q  472 taaattgttttcatataagctacaagttgttttcata 508  Q
    ||||||||||||||||||| || ||||||||||||||    
T  10212491 taaattgttttcatataagataaaagttgttttcata 10212455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 472 - 508
Target Start/End: Original strand, 10357413 - 10357449
Alignment:
Q  472 taaattgttttcatataagctacaagttgttttcata 508  Q
    |||||| |||||||||||| |||||||||||||||||    
T  10357413 taaatttttttcatataagatacaagttgttttcata 10357449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 473 - 509
Target Start/End: Complemental strand, 51197825 - 51197789
Alignment:
Q  473 aaattgttttcatataagctacaagttgttttcatat 509  Q
    |||||||||||||||||| || |||||||||||||||    
T  51197825 aaattgttttcatataagttataagttgttttcatat 51197789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 514
Target Start/End: Complemental strand, 19138808 - 19138767
Alignment:
Q  473 aaattgttttcatataagctacaagttgttttcatatgctat 514  Q
    |||||||||||| |||||||| |||||||||||||| |||||    
T  19138808 aaattgttttcagataagctataagttgttttcataagctat 19138767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 474 - 514
Target Start/End: Complemental strand, 6587195 - 6587155
Alignment:
Q  474 aattgttttcatataagctacaagttgttttcatatgctat 514  Q
    |||||||||| ||||||||| |||||||||||||| |||||    
T  6587195 aattgttttcgtataagctataagttgttttcataagctat 6587155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 508
Target Start/End: Complemental strand, 9703322 - 9703294
Alignment:
Q  480 tttcatataagctacaagttgttttcata 508  Q
    |||||||||||||||||||||||||||||    
T  9703322 tttcatataagctacaagttgttttcata 9703294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 508
Target Start/End: Complemental strand, 39823203 - 39823175
Alignment:
Q  480 tttcatataagctacaagttgttttcata 508  Q
    |||||||||||||||||||||||||||||    
T  39823203 tttcatataagctacaagttgttttcata 39823175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University