View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4303_low_3 (Length: 500)
Name: NF4303_low_3
Description: NF4303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4303_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 435; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 12 - 485
Target Start/End: Original strand, 18116045 - 18116519
Alignment:
| Q |
12 |
atgaacataaatgtggctggtcttgtcatgtatttgtctattttcttgagccaatcctaatgctgtctgctatcatatatgtgatttgttgtgtctgcca |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18116045 |
atgaacataaatgtggctggtcttgtcatgtatttgtctattttcttgagccaatcctaatgctgtctgctatcatatatgtgatttgttgtgtctgcca |
18116144 |
T |
|
| Q |
112 |
atgttgtatccatcttcatgcaaagtttttgaatgaggttttcactgaatcatttttgcttttaatatcgttgctataatataatgaaaaatggaaagga |
211 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18116145 |
atgctgtatccatcttcatgcaaagtttttgaatgaggttttcactgaatcacggttgcttttaatatcgttgctataatataatgaaaaatggaaagga |
18116244 |
T |
|
| Q |
212 |
aatgagatatgaagcacggatacagacatggacactagacacgattcacagtgtatagtagg-ttaggacctgattttaattaaatccataatctttcat |
310 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
18116245 |
aatgagatatgaagcacggatacagacatggacaccagacacgattcacagtgtatagtaggtttaggacctgattttaattaaatccataatctttcct |
18116344 |
T |
|
| Q |
311 |
aatcattgatttggattaacccactattttaacatctaatgccttaaaattagaaaatcatgattcagcgcatgtttgaaaattcattagagagacttca |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18116345 |
aatcattgatttggattaacccactattttaacatctaatgccttataattagaaaatcatgattcagcgcatgtttgaaaattcattagagagacttca |
18116444 |
T |
|
| Q |
411 |
aagatacatttgaagtatctccaatagatttccaaacacagttgtatctgcttagtttttggcttatgttttaag |
485 |
Q |
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| T |
18116445 |
aagatacatttgaagtatctccaatagatttccaaacacagttgtatccgcttagtttttggcttatgttttaag |
18116519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 257 - 446
Target Start/End: Original strand, 18100704 - 18100895
Alignment:
| Q |
257 |
tcacagtgtatagtaggtt-aggacctgattttaatt-aaatccataatctttcataatcattgatttggattaacccactattttaacatctaatgcct |
354 |
Q |
| |
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||||||| ||||||||||| ||||||||||||||||| ||| |||| |||| | |||||||| ||||||||||||| || |||||||||| ||||||| |
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| T |
18100704 |
tcacagtatatagtaggtttaggacctgattttaatttaaacccatcgtcttccctaatcattaatttggattaaccttcttttttaacatcaaatgcct |
18100803 |
T |
|
| Q |
355 |
taaaattagaaaatcatgattcagcgcatgtttgaaaattcattagagagacttcaaagatacatttgaagtatctccaatagatttccaaa |
446 |
Q |
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|||||| ||||||||||||||||| |||||||||||||||| || |||||| ||||| ||||||||||||||||||||| ||||||||||| |
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| T |
18100804 |
taaaatcagaaaatcatgattcagtgcatgtttgaaaattcgttggagagatctcaaacatacatttgaagtatctccaaaagatttccaaa |
18100895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 274 - 450
Target Start/End: Original strand, 18085926 - 18086103
Alignment:
| Q |
274 |
ttaggacctgattttaat-taaatccataatctttcataatcattgatttggattaacccactattttaacatctaatgccttaaaattagaaaatcatg |
372 |
Q |
| |
|
||||| |||||||||||| |||| |||| ||||| | |||||||||||||||||||||||||| | ||||||| ||||||||||||| ||||||||||| |
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| T |
18085926 |
ttaggtcctgattttaatataaacccatcatcttgcctaatcattgatttggattaacccactttcttaacattcaatgccttaaaatcagaaaatcatg |
18086025 |
T |
|
| Q |
373 |
attcagcgcatgtttgaaaattcattagagagacttcaaagatacatttgaagtatctccaatagatttccaaacaca |
450 |
Q |
| |
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|||||| |||||||||||||||| || || |||| ||||| ||||||||||||||||||||| || |||||||||||| |
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|
| T |
18086026 |
attcagtgcatgtttgaaaattcgttggaaagacctcaaacatacatttgaagtatctccaacaggtttccaaacaca |
18086103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 12 - 218
Target Start/End: Original strand, 18100286 - 18100487
Alignment:
| Q |
12 |
atgaacataaatgtggctggtcttgtcatgtatttgtctattttcttgagccaatcctaatgctgtctgctatcatatatgtgatttgttgtgtctgcca |
111 |
Q |
| |
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||||||| |||||||| |||| |||||||| ||||||| |||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
18100286 |
atgaacacaaatgtggttggtattgtcatgcatttgtccatttgattaagccaatcctaatgctgtctgctatcatatatgtaatttgttgtgtctgcca |
18100385 |
T |
|
| Q |
112 |
atgttgtatccatcttcatgcaaagtttttgaatgaggttttcactgaatcatttttgcttttaatatcgttgctataatataatgaaaaatggaaagga |
211 |
Q |
| |
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||| |||||||| ||||||| ||| |||||| || ||| ||||||||||||||| ||| || |||||||||||| ||||||||||||||||| || |
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| T |
18100386 |
atgctgtatccagcttcatgtaaa-tttttggataagg-tttcactgaatcattgttg---ttgtggtcgttgctataaaataatgaaaaatggaaaaga |
18100480 |
T |
|
| Q |
212 |
aatgaga |
218 |
Q |
| |
|
||||||| |
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|
| T |
18100481 |
aatgaga |
18100487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 66 - 218
Target Start/End: Original strand, 18085474 - 18085626
Alignment:
| Q |
66 |
tcctaatgctgtctgctatcatatatgtgatttgttgtgtctgccaatgttgtatccatcttcatgcaaagtttttgaatgaggttttcactgaatcatt |
165 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| || ||| | | ||||||||| |
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| T |
18085474 |
tcctaatgttgtctgctatcatatatgtgatttgttgtgtctgccaatgctgtatccatcttcatgtaaagtttttggataaggctattactgaatcacc |
18085573 |
T |
|
| Q |
166 |
tttgcttttaatatcgttgctataatataatgaaaaatggaaaggaaatgaga |
218 |
Q |
| |
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||||| ||||| |||||||||| | |||||||||| |||||| ||||||||| |
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|
| T |
18085574 |
gttgctgttaatgtcgttgctatgaaataatgaaaattggaaaagaaatgaga |
18085626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 219 - 255
Target Start/End: Complemental strand, 10339240 - 10339204
Alignment:
| Q |
219 |
tatgaagcacggatacagacatggacactagacacga |
255 |
Q |
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|||||||||||||||||||||||||||| ||||||| |
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| T |
10339240 |
tatgaagcacggatacagacatggacacaggacacga |
10339204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 18276463 - 18276503
Alignment:
| Q |
216 |
agatatgaagcacggatacagacatggacactagacacgat |
256 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||| |
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| T |
18276463 |
agatatgaagcacggatacagacacggacaccggacacgat |
18276503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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