View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4304-Insertion-11 (Length: 148)
Name: NF4304-Insertion-11
Description: NF4304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4304-Insertion-11 |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 139; Significance: 4e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 4e-73
Query Start/End: Original strand, 6 - 148
Target Start/End: Complemental strand, 24906999 - 24906857
Alignment:
| Q |
6 |
catataacttgcgtgttaaggctgtgtactcctcatccaaggcaacaatacgtctataataatcatcttcatcttgggttaaattttgcatctctttgtc |
105 |
Q |
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| T |
24906999 |
catataacttgcgtgttaaggctgcgtactcctcatccaaggcaacaatacgtctataataatcatcttcatcttgggttaaattttgcatctctttgtc |
24906900 |
T |
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| Q |
106 |
cgaaatatcaagagaagtgtgatggttgagacgaagaactaag |
148 |
Q |
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| T |
24906899 |
cgaaatatcaagagaagtgtgatggttgagacgaagaactaag |
24906857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 6e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 6e-57
Query Start/End: Original strand, 6 - 148
Target Start/End: Original strand, 31302516 - 31302656
Alignment:
| Q |
6 |
catataacttgcgtgttaaggctgtgtactcctcatccaaggcaacaatacgtctataataatcatcttcatcttgggttaaattttgcatctctttgtc |
105 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
31302516 |
catataacttgcgtgttaaggctgcgtactcctcatccaaggcaacaatacgtctataataatcatcttcatcttgggttaagttttgcatctc--tgtc |
31302613 |
T |
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| Q |
106 |
cgaaatatcaagagaagtgtgatggttgagacgaagaactaag |
148 |
Q |
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| T |
31302614 |
cgaaatatcaagagaactatgagggttgagacgaagaactaag |
31302656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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