View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4304-Insertion-18 (Length: 324)
Name: NF4304-Insertion-18
Description: NF4304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4304-Insertion-18 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-178
Query Start/End: Original strand, 6 - 324
Target Start/End: Original strand, 45560657 - 45560975
Alignment:
| Q |
6 |
gagatgacagagctcaagaacctcaaaaacatctcattgtttaacaacctgttctctggagtcatacctcaaagcttgggaatcaatagcagtttgttgc |
105 |
Q |
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| T |
45560657 |
gagatgacagagctcaagaacctcaaaaacatctcattgtttgacaacctgttctctggagtcatacctcaaagcttgggaatcaatagcagtttgttgc |
45560756 |
T |
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| Q |
106 |
aattagactttataaataataggttcactggcaacctcccacccaatctttgttttcgcagaaagctaagcgttttgaatatgggcatcaatcaacttca |
205 |
Q |
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| T |
45560757 |
aattagactttataaataataggttcactggcaacctcccacccaatctttgttttcgcagaaagctaagcgttttgaatatgggcatcaatcaacttca |
45560856 |
T |
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| Q |
206 |
aggtagcatacctcttgatgttggaagatgcacaactctaagaagggtcattcttaaacaaaacaactttactgggcctcttcctgatttcaaaaccaat |
305 |
Q |
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| T |
45560857 |
aggtagcatacctcttgatgttggaagatgcacaactctaagaagggtcattcttaaacaaaacaactttactgggcctcttcctgatttcaaaaccaat |
45560956 |
T |
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| Q |
306 |
cccaatctgttattcatgg |
324 |
Q |
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| T |
45560957 |
cccaatctgttattcatgg |
45560975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 157
Target Start/End: Original strand, 37841676 - 37841827
Alignment:
| Q |
6 |
gagatgacagagctcaagaacctcaaaaacatctcattgtttaacaacctgttctctggagtcatacctcaaagcttgggaatcaatagcagtttgttgc |
105 |
Q |
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| T |
37841676 |
gagatgacagagctcaagtatctaagaaatatctcattgtttgataatcagttctcaggagtcatacctcaaagcttgggaatcaacagcagtatagtga |
37841775 |
T |
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| Q |
106 |
aattagactttataaataataggttcactggcaacctcccacccaatctttg |
157 |
Q |
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| T |
37841776 |
agttggactgtatgaataacaagttcaatggcaatatcccacccaatctttg |
37841827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 37836057 - 37836148
Alignment:
| Q |
6 |
gagatgacagagctcaagaacctcaaaaacatctcattgtttaacaacctgttctctggagtcatacctcaaagcttgggaatcaatagcag |
97 |
Q |
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| T |
37836057 |
gagatgacaaagctcaagtatctaaaaaatatctcattgtttgataatcagttctcaggagtcatacctcaaagcttaggaatcaacagcag |
37836148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 37849432 - 37849523
Alignment:
| Q |
6 |
gagatgacagagctcaagaacctcaaaaacatctcattgtttaacaacctgttctctggagtcatacctcaaagcttgggaatcaatagcag |
97 |
Q |
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| T |
37849432 |
gagatgacaaagctcaagtatctaaaaaatatctcattgtttgataatcagttctcaggagtcacacctcaaagcttgggaataaacagcag |
37849523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 26640830 - 26640769
Alignment:
| Q |
36 |
atctcattgtttaacaacctgttctctggagtcatacctcaaagcttgggaatcaatagcag |
97 |
Q |
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| T |
26640830 |
atctcattgtttgacaatcagttctcaggaggcatacctcaaagcttgggaatcaacagcag |
26640769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 37830384 - 37830444
Alignment:
| Q |
37 |
tctcattgtttaacaacctgttctctggagtcatacctcaaagcttgggaatcaatagcag |
97 |
Q |
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| T |
37830384 |
tctcattgtttgaaaatcagttctcaggagtcatacctcaaagcttgggaatcaacagcag |
37830444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 37841853 - 37841917
Alignment:
| Q |
183 |
aatatgggcatcaatcaacttcaaggtagcatacctcttgatgttggaagatgcacaactctaag |
247 |
Q |
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| T |
37841853 |
aatatgggaatcaatcaactacaaggtggcataccttctgatcttggaagatgcgcaactctaag |
37841917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 37836234 - 37836286
Alignment:
| Q |
183 |
aatatgggcatcaatcaacttcaaggtagcatacctcttgatgttggaagatg |
235 |
Q |
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| T |
37836234 |
aatatgggaatcaatcaacttcaaggtggcataccttctgatctaggaagatg |
37836286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 6 - 106
Target Start/End: Original strand, 40540694 - 40540794
Alignment:
| Q |
6 |
gagatgacagagctcaagaacctcaaaaacatctcattgtttaacaacctgttctctggagtcatacctcaaagcttgggaatcaatagcagtttgttgc |
105 |
Q |
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| T |
40540694 |
gagatgactgagctcaaaaatctcaagaacatttcattgtttaacaaccaattttctggagttatacctcaaaccttaggaattaatagcagtttggtgc |
40540793 |
T |
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| Q |
106 |
a |
106 |
Q |
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| T |
40540794 |
a |
40540794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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