View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4304-Insertion-19 (Length: 325)
Name: NF4304-Insertion-19
Description: NF4304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4304-Insertion-19 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 224 - 325
Target Start/End: Original strand, 13765386 - 13765488
Alignment:
| Q |
224 |
tgctaggaaaaccccaaa-ctataaacatcactacgcttgtttgcaagtattcagggtcaagataccccaatgtcatctgcactagagtggttatctaac |
322 |
Q |
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| T |
13765386 |
tgctaggaaaaccccaaaactataaacatcactacgcttgtttgcaagtattcagggtcaagataccccaatgtcatctgcactagagtggttatctaac |
13765485 |
T |
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| Q |
323 |
tat |
325 |
Q |
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||| |
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| T |
13765486 |
tat |
13765488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 254
Target Start/End: Original strand, 14029477 - 14029591
Alignment:
| Q |
141 |
attgaagaaaacaaatacattgcaaggcttctttctatcgttagcttgcaaaaagatagagttttcgttcatgtgagtagctctgctaggaaaacccc-a |
239 |
Q |
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| T |
14029477 |
attgaagaaacaaagtacattgcaaggtttctttctaccactgacctacaaaaagatggtgttttatttcgtgtgagtagctctgctaggacaaccccaa |
14029576 |
T |
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| Q |
240 |
aactataaacatcac |
254 |
Q |
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| T |
14029577 |
aactatagacatcac |
14029591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 319
Target Start/End: Original strand, 14153210 - 14153270
Alignment:
| Q |
259 |
cttgtttgcaagtattcagggtcaagataccccaatgtcatctgcactagagtggttatct |
319 |
Q |
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| T |
14153210 |
cttgtttgcaagtattctgcatcaagatacctcaatgtcccctgcagtagagtggttatct |
14153270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 318
Target Start/End: Complemental strand, 40591886 - 40591613
Alignment:
| Q |
59 |
aattagggcaacttcctttagatgctcaacattttcccatcaatcaatgtttttgtccagaa---gaagtaaccagtcctatttaattgaagaaaacaaa |
155 |
Q |
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| T |
40591886 |
aattagggcaacttcctttagatgctcaacatttcccgc---atcgatgttgctgtccagaatatgaactaaccgatcttctttcattgaagaaacaaag |
40591790 |
T |
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| Q |
156 |
tacattgcaaggcttctttctatcgttagcttgcaaaaagatagagttttcgttcatgtgagtagctctgctaggaaaaccccaaa-ctataaacatcac |
254 |
Q |
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| T |
40591789 |
tacatcgcaaggcttctttctaccactggtctgctataacatagtgctttctttcctgtcagtagctctgctaggacaaccccaaagctgtagacatcac |
40591690 |
T |
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| Q |
255 |
t-------------acgcttgtttgcaagtattcagggtcaagataccccaatgtcatctgcactagagtggttatc |
318 |
Q |
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| T |
40591689 |
tcttctccgttaacacgctagtttgcaagtattctgggtcgagataccccaatgtcccttgcactagagtggttatc |
40591613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 319
Target Start/End: Complemental strand, 40602536 - 40602262
Alignment:
| Q |
59 |
aattagggcaacttcctttagatgctcaacattttcccatcaatcaatgtttttgtccagaa---gaagtaaccagtcctatttaattgaagaaaacaaa |
155 |
Q |
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| T |
40602536 |
aattatggcaacttcctttagatgatcaacatcttccca---atcaatgctgctgtccagaatatgaagcaactgatcttctttcattgaagaaacaaaa |
40602440 |
T |
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| Q |
156 |
tacattgcaaggcttctttctatcgttagcttgcaaaaagatagagttttcgttcatgtgagtagctctgctaggaaaaccccaaa-ctataaacatcac |
254 |
Q |
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| T |
40602439 |
tgcattgcaaggcttctttctacatctggcctgctaaaacatagtgctttctttcctgtcaatagctctgctagaacaaccccaaagctataaacatcac |
40602340 |
T |
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| Q |
255 |
t-------------acgcttgtttgcaagtattcagggtcaagataccccaatgtcatctgcactagagtggttatct |
319 |
Q |
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| T |
40602339 |
tcttctcagttaacatgcttgtctggaagtattctgggtcaagataccccaatgtcccctgcacaagagtgtttatct |
40602262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 325
Target Start/End: Complemental strand, 40568757 - 40568700
Alignment:
| Q |
268 |
aagtattcagggtcaagataccccaatgtcatctgcactagagtggttatctaactat |
325 |
Q |
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| T |
40568757 |
aagtattctgggtcaagataccctaatgtcccttgtactagagtggttatctgactat |
40568700 |
T |
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