View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4304-Insertion-26 (Length: 216)
Name: NF4304-Insertion-26
Description: NF4304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4304-Insertion-26 |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 13349850 - 13349635
Alignment:
| Q |
1 |
gattggtgggtttttcagtttggaaatagagtttatgaaattgatttttatcgtgttctataaattaagacggaaattcgtttttgaaattgatttatta |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
13349850 |
gattggtgggtttttcattttggaaatagagtttatgaaattgatttttatcgtgttctataaattgagacggaaattcgtttttgaaattgatttatta |
13349751 |
T |
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| Q |
101 |
tgtttcaccacttttaattgatttgtagaaattcaaacggaagacttgtagaagttcttgagtttctaaattcttggtgaattgacatggaaatcaagtt |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13349750 |
tgtttcaccacttttaattgacttgtagaaattcaaacggaagacttgtagaagttcttgagtttctaaattcttggtgaattgacatggaaatcaagtt |
13349651 |
T |
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| Q |
201 |
ttggatggattgtaat |
216 |
Q |
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| T |
13349650 |
ttggatggattgtaat |
13349635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 32038913 - 32038698
Alignment:
| Q |
1 |
gattggtgggtttttcagtttggaaatagagtttatgaaattgatttttatcgtgttctataaattaagacggaaattcgtttttgaaattgatttatta |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32038913 |
gattggtgggtttttcagtttagaaatagagtttatgaaattgatttttttcgtgttctataaattgagacggaaattcgtttttgaaattgatttatta |
32038814 |
T |
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| Q |
101 |
tgtttcaccacttttaattgatttgtagaaattcaaacggaagacttgtagaagttcttgagtttctaaattcttggtgaattgacatggaaatcaagtt |
200 |
Q |
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| T |
32038813 |
tgtttcaccacttttaattgacttgtagaaattcaaacggaagacttgtagaagttcttgagtttctaaattcttggtgaattgacatggaaatcaagtt |
32038714 |
T |
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| Q |
201 |
ttggatggattgtaat |
216 |
Q |
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| T |
32038713 |
ttggatggattgtaat |
32038698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 40021703 - 40021639
Alignment:
| Q |
152 |
aagttcttgagtttctaaattcttggtgaattgacatggaaatcaagttttggatggattgtaat |
216 |
Q |
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| T |
40021703 |
aagttcttgagtttctaaattcttggtgaattgacatggaaatcaagttttggctggattgtaat |
40021639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 40021866 - 40021808
Alignment:
| Q |
1 |
gattggtgggtttttcagtttggaaatagagtttatgaaattgatttttatcgtgttct |
59 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
40021866 |
gattggtgggtttttcagtttggaaatagagtttataaaatttctttttatcgtgttct |
40021808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 31602473 - 31602238
Alignment:
| Q |
1 |
gattggtgggtttttcagtttggaaatagagtttatgaaattgatttttatcgtgttctataaattaagacggaaattcgtttttgaaattgatttatta |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
31602473 |
gattggtggatttttcagtttggaaatagagtttatgaaattgatttttatcgtgttctataaattgagatggaaattcgtttttgaaattgatttatta |
31602374 |
T |
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| Q |
101 |
tgtttcaccacttttaattgatttgtagaaattcaaacggaagacttg---tagaa-----------------gttcttgagtttctaaattcttggtga |
180 |
Q |
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| T |
31602373 |
tgtttcaccacttaaaattgacttgtagaaattcaaacggaagacttgttttggaaaattattttgaaattaagttcttgagtttctaaattcttggtga |
31602274 |
T |
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| Q |
181 |
attgacatggaaatcaagttttggatggattgtaat |
216 |
Q |
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|||||||| ||||||||||||||| ||||||||||| |
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| T |
31602273 |
attgacatcgaaatcaagttttgggtggattgtaat |
31602238 |
T |
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