View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4304_high_2 (Length: 442)

Name: NF4304_high_2
Description: NF4304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4304_high_2
NF4304_high_2
[»] chr6 (10 HSPs)
chr6 (169-290)||(19962308-19962429)
chr6 (13-143)||(19962182-19962312)
chr6 (13-157)||(19961125-19961268)
chr6 (13-159)||(15373235-15373381)
chr6 (13-159)||(15322649-15322795)
chr6 (13-159)||(15353825-15353973)
chr6 (13-159)||(15352806-15352952)
chr6 (13-159)||(15323687-15323832)
chr6 (13-157)||(14864687-14864831)
chr6 (114-159)||(15374026-15374071)
[»] chr8 (1 HSPs)
chr8 (16-159)||(35146276-35146419)
[»] chr2 (1 HSPs)
chr2 (16-156)||(43283193-43283333)


Alignment Details
Target: chr6 (Bit Score: 118; Significance: 5e-60; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 169 - 290
Target Start/End: Original strand, 19962308 - 19962429
Alignment:
Q  169 aatcggtcatattattcagttttctaaaatttgatttatgtttattactttggcttttaatataattatgtttcatacttctcatatttgtgatatggaa 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  19962308 aatcggtcatattattcagttttctaaaatttgatttatgtttattactttggcttttaatataactatgtttcatacttctcatatttgtgatatggaa 19962407  T
Q  269 ttgtttaatgattatcctttat 290  Q
    ||||||||||||||||||||||    
T  19962408 ttgtttaatgattatcctttat 19962429  T

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Target: chr6; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 13 - 143
Target Start/End: Original strand, 19962182 - 19962312
Alignment:
Q  13 gataattctagtctgagtttatttgagatattatgagggaaaacattcccaaattccagtcataaattgctaggattgtcaaccaagctatcttaagcaa 112  Q
    ||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||| |||    
T  19962182 gataattatagtctgagtttatttgagatatcataagggaaaacattcccaaattccagtctgaaattgctaggattgtcaaccaagctaccttaaccaa 19962281  T
Q  113 caggctgcacctgatcaatctgaggcaatcg 143  Q
    |||||||||||||||||||||||||||||||    
T  19962282 caggctgcacctgatcaatctgaggcaatcg 19962312  T

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Target: chr6; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 13 - 157
Target Start/End: Complemental strand, 19961268 - 19961125
Alignment:
Q  13 gataattctagtctgagtttatttgagatattatgagggaaaacattcccaaattccagtcataaattgctaggattgtcaaccaagctatcttaagcaa 112  Q
    ||||||||||||  ||||||||||||||||| | |||||||   ||||| |||||||||||  ||||||||||||||||||||||||||  ||| |||||    
T  19961268 gataattctagtaggagtttatttgagatatcacgagggaagcaattcctaaattccagtctgaaattgctaggattgtcaaccaagcttccttcagcaa 19961169  T
Q  113 caggctgcacctgatcaatctgaggcaatcgccttttcttattat 157  Q
    |||||||||||||||| | ||||||||||||||||||||||||||    
T  19961168 caggctgcacctgatc-acctgaggcaatcgccttttcttattat 19961125  T

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Target: chr6; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 15373235 - 15373381
Alignment:
Q  13 gataattctagtctgagtttatttgagatattatgagggaaaacattcccaaattccagtcataaattgctaggattgtcaaccaagctatcttaagcaa 112  Q
    |||||||||||||| ||||||||||||||||  | | |||||||| ||| |||||||||||  | ||||||||||||||||||||||||| |||  ||||    
T  15373235 gataattctagtcttagtttatttgagatatcttaatggaaaacaatcctaaattccagtctgatattgctaggattgtcaaccaagctaccttcggcaa 15373334  T
Q  113 caggctgcacctgatcaatctgaggcaatcgccttttcttattataa 159  Q
    |||||||||  ||||||| ||||| ||||||||||||||||||||||    
T  15373335 caggctgcatgtgatcaacctgagacaatcgccttttcttattataa 15373381  T

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Target: chr6; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 15322649 - 15322795
Alignment:
Q  13 gataattctagtctgagtttatttgagatattatgagggaaaacattcccaaattccagtcataaattgctaggattgtcaaccaagctatcttaagcaa 112  Q
    |||||||||||||| ||||||||||||||||  | |  |||||||||||||||||||||||  | ||||||||||| ||||||||| ||| |||  ||||    
T  15322649 gataattctagtcttagtttatttgagatatcttaatagaaaacattcccaaattccagtctgatattgctaggatggtcaaccaatctaccttcggcaa 15322748  T
Q  113 caggctgcacctgatcaatctgaggcaatcgccttttcttattataa 159  Q
    || |||||| |||||||| ||||| ||||||||||||||||||||||    
T  15322749 caagctgcatctgatcaacctgagacaatcgccttttcttattataa 15322795  T

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Target: chr6; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 13 - 159
Target Start/End: Complemental strand, 15353973 - 15353825
Alignment:
Q  13 gataattctagtctgagtttatttgagatat--tatgagggaaaacattcccaaattccagtcataaattgctaggattgtcaaccaagctatcttaagc 110  Q
    ||||||| |||||| ||||||||||||||||  ||  |  ||||||| ||| |||||||| ||  | ||||||||||||||||||||||||| |||  ||    
T  15353973 gataattttagtcttagtttatttgagatatcttaatatagaaaacaatccaaaattccaatctgatattgctaggattgtcaaccaagctaccttcggc 15353874  T
Q  111 aacaggctgcacctgatcaatctgaggcaatcgccttttcttattataa 159  Q
    |||||||||||  ||||||| ||||| ||||||||||||||||||||||    
T  15353873 aacaggctgcatgtgatcaacctgagacaatcgccttttcttattataa 15353825  T

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Target: chr6; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 15352806 - 15352952
Alignment:
Q  13 gataattctagtctgagtttatttgagatattatgagggaaaacattcccaaattccagtcataaattgctaggattgtcaaccaagctatcttaagcaa 112  Q
    |||||||||||||| ||||||||||||||||  | |  |||||||||||||||||||||||  | ||||||| ||| ||||||||| ||| |||  ||||    
T  15352806 gataattctagtcttagtttatttgagatatcttaatagaaaacattcccaaattccagtctgatattgctacgatggtcaaccaatctaccttcggcaa 15352905  T
Q  113 caggctgcacctgatcaatctgaggcaatcgccttttcttattataa 159  Q
    || ||||||  |||||||  | || ||||||||||||||||||||||    
T  15352906 caagctgcatttgatcaacataagacaatcgccttttcttattataa 15352952  T

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Target: chr6; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 159
Target Start/End: Complemental strand, 15323832 - 15323687
Alignment:
Q  13 gataattctagtctgagtttatttgagatattatgagggaaaacattcccaaattccagtcataaattgctaggattgtcaaccaagctatcttaagcaa 112  Q
    ||||||| |||||| ||||||||||||||||  | |  |||||||||||||| ||||| ||  |   ||||||||||||||||||||||| |||  ||||    
T  15323832 gataattttagtcttagtttatttgagatatcttaatagaaaacattcccaa-ttccaatctgattatgctaggattgtcaaccaagctaccttcggcaa 15323734  T
Q  113 caggctgcacctgatcaatctgaggcaatcgccttttcttattataa 159  Q
    |||| ||||  ||||||| ||||| ||||||||||||||||||||||    
T  15323733 caggttgcatgtgatcaacctgagacaatcgccttttcttattataa 15323687  T

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Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 157
Target Start/End: Original strand, 14864687 - 14864831
Alignment:
Q  13 gataattctagtctgagtttatttgagatattatgagggaaaacattcccaaattccagtcataaattgctaggattgtcaaccaagctatcttaagcaa 112  Q
    |||||||||| ||| ||||||||||||||||  |||  ||||||||| |||||||||||||  ||| ||| |||||||||||  ||  || |||   |||    
T  14864687 gataattctaatcttagtttatttgagatatcttgatagaaaacattaccaaattccagtctgaaactgcaaggattgtcaagaaaaataccttcgacaa 14864786  T
Q  113 caggctgcacctgatcaatctgaggcaatcgccttttcttattat 157  Q
    ||||||| |   |||||| ||||| ||||||||||||||||||||    
T  14864787 caggctgtatgcgatcaacctgagacaatcgccttttcttattat 14864831  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 159
Target Start/End: Complemental strand, 15374071 - 15374026
Alignment:
Q  114 aggctgcacctgatcaatctgaggcaatcgccttttcttattataa 159  Q
    ||||||||  ||||||| ||||| ||||||||||||||||||||||    
T  15374071 aggctgcatgtgatcaacctgagacaatcgccttttcttattataa 15374026  T

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Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 35146419 - 35146276
Alignment:
Q  16 aattctagtctgagtttatttgagatattatgagggaaaacattcccaaattccagtcataaattgctaggattgtcaaccaagctatcttaagcaacag 115  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||  |||||||    
T  35146419 aattccagtctgagtttatttgagatatcatgagggaaaacattcccaaattccagtctgaaattgctaggattgtcaaccaagctaccttcggcaacag 35146320  T
Q  116 gctgcacctgatcaatctgaggcaatcgccttttcttattataa 159  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  35146319 gctgcacctgatcaacctgaggcaatcgccttttcttattataa 35146276  T

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Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 156
Target Start/End: Original strand, 43283193 - 43283333
Alignment:
Q  16 aattctagtctgagtttatttgagatattatgagggaaaacattcccaaattccagtcataaattgctaggattgtcaaccaagctatcttaagcaacag 115  Q
    ||||| ||||||||||||||  ||| ||| ||| ||||||||||  ||||| | || |  ||||||||| ||||||||| ||||||| ||  ||||||||    
T  43283193 aattccagtctgagtttattcaagaaattttgatggaaaacattttcaaatcctagactaaaattgctatgattgtcaatcaagctacctgcagcaacag 43283292  T
Q  116 gctgcacctgatcaatctgaggcaatcgccttttcttatta 156  Q
    ||||||| |||||||  |||||||| |||||||||||||||    
T  43283293 gctgcacatgatcaacatgaggcaaccgccttttcttatta 43283333  T

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