View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4304_high_5 (Length: 250)

Name: NF4304_high_5
Description: NF4304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4304_high_5
NF4304_high_5
[»] chr3 (19 HSPs)
chr3 (15-250)||(44080281-44080517)
chr3 (159-250)||(4169098-4169190)
chr3 (167-250)||(31545640-31545724)
chr3 (167-250)||(42637957-42638041)
chr3 (167-250)||(42481324-42481408)
chr3 (64-250)||(19280222-19280409)
chr3 (170-234)||(11501311-11501375)
chr3 (159-250)||(22432354-22432446)
chr3 (160-249)||(27707698-27707788)
chr3 (190-250)||(27335407-27335468)
chr3 (167-231)||(26308641-26308705)
chr3 (167-234)||(1705671-1705738)
chr3 (167-234)||(3786004-3786070)
chr3 (63-149)||(11510062-11510148)
chr3 (167-234)||(19624346-19624413)
chr3 (63-217)||(5341934-5342089)
chr3 (175-250)||(13358101-13358177)
chr3 (167-234)||(3823694-3823760)
chr3 (170-217)||(9710728-9710775)
[»] chr2 (8 HSPs)
chr2 (63-250)||(1400670-1400859)
chr2 (63-248)||(28527220-28527405)
chr2 (167-250)||(33667339-33667423)
chr2 (63-250)||(30905947-30906136)
chr2 (173-250)||(45305990-45306068)
chr2 (167-250)||(43900552-43900636)
chr2 (63-136)||(34175247-34175321)
chr2 (190-234)||(34175160-34175204)
[»] chr1 (12 HSPs)
chr1 (63-250)||(29676982-29677170)
chr1 (171-249)||(25238502-25238580)
chr1 (170-234)||(42604259-42604323)
chr1 (64-249)||(29167709-29167893)
chr1 (167-250)||(34364255-34364339)
chr1 (167-224)||(2569959-2570016)
chr1 (65-249)||(34490213-34490399)
chr1 (67-115)||(42604114-42604162)
chr1 (167-217)||(5831590-5831640)
chr1 (190-250)||(2996036-2996097)
chr1 (60-105)||(34941698-34941743)
chr1 (67-151)||(5855012-5855096)
[»] chr4 (13 HSPs)
chr4 (60-250)||(19596806-19596999)
chr4 (63-250)||(1966731-1966917)
chr4 (167-250)||(33179760-33179844)
chr4 (190-250)||(55666850-55666910)
chr4 (168-234)||(42908609-42908675)
chr4 (194-250)||(8740819-8740875)
chr4 (167-234)||(14351103-14351170)
chr4 (190-234)||(16583637-16583681)
chr4 (167-250)||(33249617-33249701)
chr4 (190-250)||(9809098-9809159)
chr4 (190-250)||(17633365-17633426)
chr4 (107-144)||(35544545-35544582)
chr4 (190-234)||(9810801-9810845)
[»] chr5 (17 HSPs)
chr5 (65-250)||(42034780-42034967)
chr5 (170-234)||(19621477-19621541)
chr5 (159-250)||(35922756-35922848)
chr5 (190-250)||(43262710-43262771)
chr5 (167-250)||(13312622-13312706)
chr5 (64-217)||(33958878-33959031)
chr5 (167-250)||(22169481-22169565)
chr5 (190-249)||(30704403-30704463)
chr5 (169-223)||(2477306-2477360)
chr5 (171-217)||(43461706-43461752)
chr5 (71-151)||(35922617-35922698)
chr5 (61-151)||(36169300-36169391)
chr5 (167-217)||(15221622-15221672)
chr5 (67-151)||(43262819-43262904)
chr5 (67-135)||(43461835-43461904)
chr5 (190-234)||(7156133-7156177)
chr5 (194-250)||(38521996-38522052)
[»] chr8 (10 HSPs)
chr8 (167-250)||(1240902-1240985)
chr8 (167-234)||(5321963-5322030)
chr8 (60-250)||(38606721-38606913)
chr8 (167-250)||(15714696-15714780)
chr8 (167-250)||(1251478-1251561)
chr8 (190-250)||(29367079-29367140)
chr8 (167-250)||(5573804-5573887)
chr8 (159-250)||(26493330-26493421)
chr8 (112-151)||(6809920-6809959)
chr8 (167-217)||(24575908-24575958)
[»] chr7 (11 HSPs)
chr7 (63-250)||(31303477-31303665)
chr7 (167-250)||(4290851-4290934)
chr7 (63-250)||(21589647-21589836)
chr7 (63-250)||(28804883-28805074)
chr7 (167-231)||(5174910-5174974)
chr7 (175-250)||(20556790-20556866)
chr7 (63-250)||(21548476-21548664)
chr7 (171-250)||(22740664-22740744)
chr7 (175-231)||(27523496-27523552)
chr7 (167-234)||(18312867-18312934)
chr7 (71-103)||(31303362-31303394)
[»] chr6 (13 HSPs)
chr6 (67-224)||(2430507-2430665)
chr6 (167-250)||(138716-138800)
chr6 (167-250)||(146737-146821)
chr6 (161-250)||(3620755-3620845)
chr6 (159-250)||(33815008-33815101)
chr6 (167-250)||(3222455-3222540)
chr6 (111-250)||(9068430-9068569)
chr6 (167-234)||(10304701-10304768)
chr6 (167-223)||(23595196-23595252)
chr6 (63-234)||(2835003-2835175)
chr6 (190-249)||(9474655-9474714)
chr6 (67-151)||(20084581-20084666)
chr6 (167-250)||(22608384-22608468)
[»] scaffold0123 (1 HSPs)
scaffold0123 (167-249)||(24022-24104)
[»] scaffold1126 (1 HSPs)
scaffold1126 (61-250)||(102-294)
[»] scaffold0251 (1 HSPs)
scaffold0251 (168-249)||(10617-10699)
[»] scaffold0126 (1 HSPs)
scaffold0126 (69-130)||(21420-21482)
[»] scaffold0043 (1 HSPs)
scaffold0043 (190-250)||(87046-87107)


Alignment Details
Target: chr3 (Bit Score: 144; Significance: 8e-76; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 44080517 - 44080281
Alignment:
Q  15 actattacataaattgttgttgggagaaaagtgtaaccttgaattcaacaatgataggtagacacccttaatgtgtatatccatttgta-cctttttaaa 113  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||| || |||||| |||||||| |||| || |||||| |||    
T  44080517 actattacataaattgttgttgggagaaaagtgcaaccttggattcaagaatgataggtagaaactcttaatatgtatatctatttatatccttttgaaa 44080418  T
Q  114 aatttcagttaatcaaagatatagtatgtgttaccacannnnnnnagttgcacgaccactattttttcagaatgtttttggttaactaagtggaaaaata 213  Q
    |||||||||||||||| |||||||| ||||||||||||       |||||  |||||||||||||| || ||| ||||||||||||||||||||||||||    
T  44080417 aatttcagttaatcaaggatatagtctgtgttaccacatttttttagttgtgcgaccactatttttccaaaatttttttggttaactaagtggaaaaata 44080318  T
Q  214 gtgggcacgcacattttagtttgtgaccacatttttc 250  Q
    |||||||||||||||||||||||||||||||||||||    
T  44080317 gtgggcacgcacattttagtttgtgaccacatttttc 44080281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 250
Target Start/End: Original strand, 4169098 - 4169190
Alignment:
Q  159 agttgcacgaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    ||||||| ||| |||||||||||||||| | ||||||||||||| |||||||||||||| ||||||||||||||||  || ||||||||||||    
T  4169098 agttgcatgactactattttttcagaatttatttggttaactaaatggaaaaatagtggtcacgcacattttagttgcgttaccacatttttc 4169190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 167 - 250
Target Start/End: Complemental strand, 31545724 - 31545640
Alignment:
Q  167 gaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    ||||||||||||| |||||| | ||| ||||||||||| |||||||||||| || ||||||||||||| ||||||||||||||||    
T  31545724 gaccactatttttccagaatttattttgttaactaagtagaaaaatagtggtcatgcacattttagttgtgtgaccacatttttc 31545640  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 42637957 - 42638041
Alignment:
Q  167 gaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    |||||||||||||||||||| | ||||||||||||||| ||||||||||||  |||| ||||||||||  |||||||||||||||    
T  42637957 gaccactattttttcagaatttatttggttaactaagttgaaaaatagtggttacgcgcattttagttgcgtgaccacatttttc 42638041  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 167 - 250
Target Start/End: Complemental strand, 42481408 - 42481324
Alignment:
Q  167 gaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    ||||| |||||||||||||| | ||||||||||||||| |||||||| ||| |||| ||||||||||| |||||||| |||||||    
T  42481408 gaccattattttttcagaatttatttggttaactaagtagaaaaataatggtcacgtacattttagttgtgtgaccatatttttc 42481324  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 250
Target Start/End: Complemental strand, 19280409 - 19280222
Alignment:
Q  64 aatgataggtagacacccttaatgtgtatatccatttgtacctttttaaaaatttc-agttaatcaaagatatagtatgtgttaccacannnnnnnagtt 162  Q
    |||||||||||||||||||||||||||| | || ||||||||  | | |||||||  ||||||||||| |||| || ||||| || |||       |||     
T  19280409 aatgataggtagacacccttaatgtgtacacccgtttgtaccactctgaaaatttttagttaatcaaatatatggtctgtgtgacaacattttttaagtg 19280310  T
Q  163 gcacgaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    |   |||||||| ||||||| ||| | ||||||||||||||||| |||||||||| |||||  |||||||||  |||||||||||||||    
T  19280309 gtgtgaccactaatttttcaaaatttatttggttaactaagtgg-aaaatagtggtcacgcgaattttagttgcgtgaccacatttttc 19280222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 11501375 - 11501311
Alignment:
Q  170 cactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt 234  Q
    ||||||||||| | ||| | ||||||||||||| |||||||||||||| ||||||||||||||||    
T  11501375 cactatttttttaaaatttatttggttaactaattggaaaaatagtggtcacgcacattttagtt 11501311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 250
Target Start/End: Complemental strand, 22432446 - 22432354
Alignment:
Q  159 agttgcacgaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    ||||||| |||||||||||||||| ||| | |||||| ||||| ||||||||||||||| ||| | ||||||||||   ||||||||||||||    
T  22432446 agttgcatgaccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttc 22432354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 249
Target Start/End: Complemental strand, 27707788 - 27707698
Alignment:
Q  160 gttgcacgaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacattttt 249  Q
    |||||| | ||||||||||| |||||| | |||||||||  ||||| ||||||||||| || ||||||||||||| || ||||||||||||    
T  27707788 gttgcatgtccactatttttccagaatttatttggttaatcaagtgaaaaaatagtggtcatgcacattttagttgtgcgaccacattttt 27707698  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 27335407 - 27335468
Alignment:
Q  190 tttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    |||||||||||||||||||||||||||| ||||   ||||||||| ||||||||||||||||    
T  27335407 tttggttaactaagtggaaaaatagtggtcacgtgtattttagttgtgtgaccacatttttc 27335468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 26308641 - 26308705
Alignment:
Q  167 gaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacatttta 231  Q
    |||||||| |||| |||||| | ||||||||| |||||||||||||||||| ||||| |||||||    
T  26308641 gaccactaattttccagaatttatttggttaagtaagtggaaaaatagtggtcacgcgcatttta 26308705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 234
Target Start/End: Original strand, 1705671 - 1705738
Alignment:
Q  167 gaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt 234  Q
    |||||||| |||| |||||  | |||||||||||||| ||||||||||||| ||||| ||||||||||    
T  1705671 gaccactagttttccagaaattatttggttaactaaggggaaaaatagtggtcacgcgcattttagtt 1705738  T

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Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 234
Target Start/End: Complemental strand, 3786070 - 3786004
Alignment:
Q  167 gaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt 234  Q
    ||||||||||||| || ||| | |||||||||||||||||||||| ||||| ||||| ||||||||||    
T  3786070 gaccactatttttccataatttatttggttaactaagtggaaaaa-agtggtcacgcgcattttagtt 3786004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 149
Target Start/End: Complemental strand, 11510148 - 11510062
Alignment:
Q  63 caatgataggtagacacccttaatgtgtatatccatttgtac-ctttttaaaaatttcagttaatcaaagatatagtatgtgttacca 149  Q
    |||||||||||||||| ||||||||||||||||| ||||||| | | | |||||||||||||||  ||| ||||| ||||||| ||||    
T  11510148 caatgataggtagacatccttaatgtgtatatcc-tttgtacacctctgaaaaatttcagttaaataaatatataatatgtgtgacca 11510062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 234
Target Start/End: Complemental strand, 19624413 - 19624346
Alignment:
Q  167 gaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt 234  Q
    |||||| |||||| |||||| | | |||||||||||||||||||||||||| ||||  ||||||||||    
T  19624413 gaccacaatttttccagaatttatgtggttaactaagtggaaaaatagtggtcacgtgcattttagtt 19624346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 217
Target Start/End: Complemental strand, 5342089 - 5341934
Alignment:
Q  63 caatgataggtagacacccttaatgtgtatatccatttgtaccttttt-aaaaatttcagttaatcaaagatatagtatgtgttaccacannnnnnnagt 161  Q
    |||||||||||||||| || ||||| ||| | || |||||||   | | ||||||||||||||||| || |||| || ||||| ||||||       |||    
T  5342089 caatgataggtagacatccctaatgcgtacacccctttgtacgactctgaaaaatttcagttaatcgaatatatggtctgtgtgaccacatttttttagt 5341990  T
Q  162 tgcacgaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgg 217  Q
    ||    |||| ||| |||||||||| | ||||||||||||||||||||||||||||    
T  5341989 tgtgtaaccattatgttttcagaatttatttggttaactaagtggaaaaatagtgg 5341934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 13358101 - 13358177
Alignment:
Q  175 ttttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    |||||||| ||| | |||||||||||| |||||||||||||||  |||| ||||||| || |||||||| |||||||    
T  13358101 ttttttcaaaatttatttggttaactatgtggaaaaatagtggtaacgcgcattttaattgtgtgaccatatttttc 13358177  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 234
Target Start/End: Complemental strand, 3823760 - 3823694
Alignment:
Q  167 gaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt 234  Q
    ||||||||||||| || ||| | |||||||||||||||||||||| ||||| ||| | ||||||||||    
T  3823760 gaccactatttttccataatttatttggttaactaagtggaaaaa-agtggtcacacgcattttagtt 3823694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 217
Target Start/End: Original strand, 9710728 - 9710775
Alignment:
Q  170 cactattttttcagaatgtttttggttaactaagtggaaaaatagtgg 217  Q
    ||||| ||| ||||||| | ||||||||||||||||||||||||||||    
T  9710728 cactagtttctcagaatttatttggttaactaagtggaaaaatagtgg 9710775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 63 - 250
Target Start/End: Original strand, 1400670 - 1400859
Alignment:
Q  63 caatgataggtagacacccttaatgtgtatatccatttgtaccttttt-aaaaatttcagttaatcaaagatatagtatgtgttaccacannnnnnnagt 161  Q
    |||| |||||||||||||||||||||||| | || ||||||||  | | ||||||||||||||| |||| |||| |||||||| ||||||       |||    
T  1400670 caataataggtagacacccttaatgtgtacacccttttgtaccaatctgaaaaatttcagttaaccaaatatatggtatgtgtgaccacattttttaagt 1400769  T
Q  162 tgcacgaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    |||  ||||||||||||| || ||| | |||||||||||||||||||||||||||  ||||| |||||| ||| ||||||||||||||||    
T  1400770 tgcgtgaccactatttttccataatttatttggttaactaagtggaaaaatagtgatcacgcgcatttttgttgtgtgaccacatttttc 1400859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 63 - 248
Target Start/End: Original strand, 28527220 - 28527405
Alignment:
Q  63 caatgataggtagacacccttaatgtgtatatccatttgtaccttttt-aaaaatttcagttaatcaaagatatagtatgtgttaccacannnnnnnagt 161  Q
    |||||||||||||||||||||||| |||| | || ||||||||  ||| ||||||||||| ||| |||| |||| || ||||| ||||||       |||    
T  28527220 caatgataggtagacacccttaat-tgtacacccctttgtaccactttgaaaaatttcagctaaccaaatatatggtctgtgtgaccacatttttttagt 28527318  T
Q  162 tgcacgaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtttgtgaccacatttt 248  Q
    |||  ||||||||||||| |||||| | ||||||||||||| |||||||||||||| ||| | ||| |||||| ||||| |||||||    
T  28527319 tgcgtgaccactatttttccagaatttatttggttaactaattggaaaaatagtggtcacacgcatgttagttcgtgacaacatttt 28527405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 167 - 250
Target Start/End: Complemental strand, 33667423 - 33667339
Alignment:
Q  167 gaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||  |||||||||||| ||  |||||||||||||||    
T  33667423 gaccactattttttcagaatatatttggttaactaagtggaaaaatagtggttacgcacattttaattgcgtgaccacatttttc 33667339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 63 - 250
Target Start/End: Original strand, 30905947 - 30906136
Alignment:
Q  63 caatgataggtagacacccttaatgtgtatatccatttgtacctttttaaaaatttc-agttaatcaaagatatagtatgtgttaccacannnnnnnagt 161  Q
    ||||||||||||||||| ||||||||||| |||| |||||| | || | |||||||  |||||| || | |||| || ||||| ||||||       |||    
T  30905947 caatgataggtagacactcttaatgtgtacatccctttgtaacattctgaaaatttttagttaaccagatatattgtctgtgtgaccacatttatttagt 30906046  T
Q  162 tgcacgaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    ||   ||||||||| ||| || ||| | |||| ||||||||||||||||||||||| ||||| ||||||||||  |||||||||||||||    
T  30906047 tgtgtgaccactatgtttccataatttatttgcttaactaagtggaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttc 30906136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 45306068 - 45305990
Alignment:
Q  173 tattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    |||||||| ||||| | || ||||||||||||||||||||||||| ||||||||||||||||  ||| |||||||||||    
T  45306068 tatttttttagaatttattcggttaactaagtggaaaaatagtggtcacgcacattttagttgcgtggccacatttttc 45305990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 250
Target Start/End: Complemental strand, 43900636 - 43900552
Alignment:
Q  167 gaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    |||| ||||||||||||||| | ||||||||||||| | |||||||||||| ||||  ||||||||||  |||||||||||||||    
T  43900636 gacccctattttttcagaatttatttggttaactaaatagaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttc 43900552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 136
Target Start/End: Complemental strand, 34175321 - 34175247
Alignment:
Q  63 caatgataggtagacacccttaatgtgtatatccatttgtacc-tttttaaaaatttcagttaatcaaagatata 136  Q
    ||||||||||| |||||| |||||||||| | ||||||||||| || | |||||||| ||||||||||| |||||    
T  34175321 caatgataggttgacaccattaatgtgtacacccatttgtaccattctaaaaaatttaagttaatcaaatatata 34175247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 34175204 - 34175160
Alignment:
Q  190 tttggttaactaagtggaaaaatagtgggcacgcacattttagtt 234  Q
    |||||||||||||||||||||||||  | ||| ||||||||||||    
T  34175204 tttggttaactaagtggaaaaatagcagtcacacacattttagtt 34175160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 63 - 250
Target Start/End: Original strand, 29676982 - 29677170
Alignment:
Q  63 caatgataggtagacacccttaatgtgtatatccatttgtaccttttt-aaaaatttcagttaatcaaagatatagtatgtgttaccacannnnnnnagt 161  Q
    ||||||||| |||||||| ||||||||||  ||| |||||| |  ||| |||||||| |||||| |||| |||| |  ||||| ||||||       |||    
T  29676982 caatgatagttagacacctttaatgtgtacgtccctttgtagcactttgaaaaattttagttaaccaaatatatggcctgtgtgaccacatttttt-agt 29677080  T
Q  162 tgcacgaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    |||| |||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||    
T  29677081 tgcatgaccactattttttcagaatttatttggttaactaagtggaaaaatagtggtcacgcacattttagttgcgtgaccacatttttc 29677170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 171 - 249
Target Start/End: Complemental strand, 25238580 - 25238502
Alignment:
Q  171 actattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtttgtgaccacattttt 249  Q
    |||| ||||||||||| | ||||||||||||||||||||||||||||  |||||||||||| |  ||||||||||||||    
T  25238580 actagtttttcagaatttatttggttaactaagtggaaaaatagtggttacgcacattttattacgtgaccacattttt 25238502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 42604323 - 42604259
Alignment:
Q  170 cactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt 234  Q
    ||||||||||||||||| | ||| |||||||||||||||||||||||| ||||| ||||||||||    
T  42604323 cactattttttcagaatttatttcgttaactaagtggaaaaatagtggtcacgcgcattttagtt 42604259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 249
Target Start/End: Original strand, 29167709 - 29167893
Alignment:
Q  64 aatgataggtagacacccttaatgtgtatatccatttgtaccttttt-aaaaatttcagttaatcaaagatatagtatgtgttaccacannnnnnnagtt 162  Q
    ||||||| ||||||| | || |||||||||| ||||  |||| |||| |||||||||||||||  ||| |||| || ||||| ||||||       ||||    
T  29167709 aatgatacgtagacatctttgatgtgtatattcatta-taccattttgaaaaatttcagttaactaaatatatggtttgtgtgaccacatttttt-agtt 29167806  T
Q  163 gcacgaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtttgtgaccacattttt 249  Q
    ||  |||||||| |||||| |||| | |||||||||||||||||||||||||||| || || ||||||| |  ||||||| ||||||    
T  29167807 gcctgaccactagtttttcggaatttatttggttaactaagtggaaaaatagtggtcatgcgcattttattgcgtgaccatattttt 29167893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 250
Target Start/End: Complemental strand, 34364339 - 34364255
Alignment:
Q  167 gaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    ||||| ||||||| |||||| |||||||||||||||||| |||||| |||| ||||  |||||||||| ||||||||||| ||||    
T  34364339 gaccattatttttccagaatttttttggttaactaagtgaaaaaattgtggtcacgttcattttagttgtgtgaccacatgtttc 34364255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 2570016 - 2569959
Alignment:
Q  167 gaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgca 224  Q
    |||||||||||||  ||||| | |||||||||||||||||||||||||||| ||||||    
T  2570016 gaccactatttttctagaatttatttggttaactaagtggaaaaatagtggtcacgca 2569959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 249
Target Start/End: Complemental strand, 34490399 - 34490213
Alignment:
Q  65 atgataggtagacacccttaatgtgtatatccatttgtaccttttt-aaaaatttcagttaatcaaagatatagtatgtgttaccacannnnnnnagttg 163  Q
    ||||||||||||||| ||||||||||| | |  ||||||||  | | ||||||||||||| |  ||| |||| || ||||| ||||||       |||||    
T  34490399 atgataggtagacactcttaatgtgtacaccactttgtaccactctgaaaaatttcagtttacaaaatatatggtctgtgtgaccacatttttttagttg 34490300  T
Q  164 cacgaccacta-ttttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtttgtgaccacattttt 249  Q
    |  |||||||| |||||||||||| | ||||||||||||| | |||||||||||| || || ||||||| |   |||||||||||||    
T  34490299 cgtgaccactagttttttcagaatttatttggttaactaactagaaaaatagtggtcatgcgcattttattgcatgaccacattttt 34490213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 42604114 - 42604162
Alignment:
Q  67 gataggtagacacccttaatgtgtatatccatttgtacctttttaaaaa 115  Q
    |||||||||||| |||||||||||| | ||||||||||| |||||||||    
T  42604114 gataggtagacaaccttaatgtgtacacccatttgtaccattttaaaaa 42604162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 5831640 - 5831590
Alignment:
Q  167 gaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgg 217  Q
    |||||||| |||| |||||| | ||||||||||||||||||||||| ||||    
T  5831640 gaccactaattttccagaatttatttggttaactaagtggaaaaattgtgg 5831590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 2996097 - 2996036
Alignment:
Q  190 tttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    |||||||||||||| |||||||||| || ||||| ||||||| ||  |||||||||||||||    
T  2996097 tttggttaactaagcggaaaaatagcggccacgcgcattttatttgcgtgaccacatttttc 2996036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 34941698 - 34941743
Alignment:
Q  60 caacaatgataggtagacacccttaatgtgtatatccatttgtacc 105  Q
    ||||||||||||| ||||| |||||||||||| |||| ||||||||    
T  34941698 caacaatgataggaagacatccttaatgtgtacatccctttgtacc 34941743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 151
Target Start/End: Original strand, 5855012 - 5855096
Alignment:
Q  67 gataggtagacacccttaatgtgtatatccatttgtacctttttaaaaatttcagttaatcaaagatatagtatgtgttaccaca 151  Q
    ||||||||||||| |||||||| || |||| |||||||   || ||||||||||| ||| |||| |||| || ||||| ||||||    
T  5855012 gataggtagacacgcttaatgtttacatccctttgtactacttgaaaaatttcagctaaccaaatatatggtctgtgtgaccaca 5855096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 60 - 250
Target Start/End: Complemental strand, 19596999 - 19596806
Alignment:
Q  60 caacaatgataggtagacacccttaatgtgtatatccatttgta-cctttttaaaaatttcagttaatcaaagatatagtatgtgttaccaca-nnnnnn 157  Q
    |||||||||||||||||| ||||||||||||| |||| |||||| ||||||  |||||||||||||| |||| |||| ||| |||| ||||||           
T  19596999 caacaatgataggtagacgcccttaatgtgtacatccttttgtacccttttggaaaatttcagttaaccaaatatatggtacgtgtgaccacattttttt 19596900  T
Q  158 nagttgcacgaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
     || |||  ||||||||| |||||||||| | |||||||||||||||||  ||||||| | || || ||||||||||  |||||||||||||||    
T  19596899 tagctgcgtgaccactatgttttcagaatttatttggttaactaagtgggtaaatagtagtcatgcgcattttagttgcgtgaccacatttttc 19596806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 250
Target Start/End: Original strand, 1966731 - 1966917
Alignment:
Q  63 caatgataggtagacacccttaatgtgtatatccatttgtacctttttaaaaatttcagttaatcaaagatatagtatgtgttaccacannnnnnnagtt 162  Q
    |||||||||||||||||||||| ||| || | || ||||||||  | | |||||||||||||| |||| |||| || ||||| ||||||       ||||    
T  1966731 caatgataggtagacacccttactgtatacacccttttgtaccactctgaaaatttcagttaaccaaatatatggtctgtgtgaccacatttttt-agtt 1966829  T
Q  163 gcacgaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    ||  |||||||| |||| |||||| | ||||||||| |||||||||||||||||| ||||| || |||||||  |||||||||||||||    
T  1966830 gcgtgaccactagttttccagaatttatttggttaattaagtggaaaaatagtggtcacgcgca-tttagttgcgtgaccacatttttc 1966917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 33179760 - 33179844
Alignment:
Q  167 gaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    |||||||| ||||| ||||| | |||| ||||||||||||||||||||||| ||| | |||||||||| |||| |||||||||||    
T  33179760 gaccactacttttttagaatttatttgattaactaagtggaaaaatagtggtcacacgcattttagttgtgtggccacatttttc 33179844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 55666850 - 55666910
Alignment:
Q  190 tttggttaactaagtggaaaaatagtgggcacgcacattttagtttgtgaccacatttttc 250  Q
    |||| ||||||||||||||||||||||| |||| ||||||||||| |||||||| ||||||    
T  55666850 tttgcttaactaagtggaaaaatagtggtcacgaacattttagttcgtgaccacgtttttc 55666910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 42908675 - 42908609
Alignment:
Q  168 accactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt 234  Q
    |||||||||||| |||||| | |||||||||||||| ||||| ||||||| ||||| ||||||||||    
T  42908675 accactatttttccagaatttatttggttaactaagaggaaacatagtggtcacgcgcattttagtt 42908609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 8740819 - 8740875
Alignment:
Q  194 gttaactaagtggaaaaatagtgggcacgcacattttagtttgtgaccacatttttc 250  Q
    ||||||||||| |||||||||||| ||||| |||||||||  |||||||||||||||    
T  8740819 gttaactaagtagaaaaatagtggtcacgcgcattttagtacgtgaccacatttttc 8740875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 234
Target Start/End: Complemental strand, 14351170 - 14351103
Alignment:
Q  167 gaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt 234  Q
    ||||||||||||  || ||| | |||||||||||||||||||||||||||| || | |||||||||||    
T  14351170 gaccactattttgacaaaatttatttggttaactaagtggaaaaatagtggtcatggacattttagtt 14351103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 16583681 - 16583637
Alignment:
Q  190 tttggttaactaagtggaaaaatagtgggcacgcacattttagtt 234  Q
    ||||||||| |||||||||||||||||| ||||| ||||||||||    
T  16583681 tttggttaattaagtggaaaaatagtggtcacgcgcattttagtt 16583637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 33249617 - 33249701
Alignment:
Q  167 gaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacatttta-gtttgtgaccacatttttc 250  Q
    |||||||| ||||||| ||| | |||| ||||||| ||||||||||||||| ||| | ||||||| ||  |||||||||||||||    
T  33249617 gaccactactttttcaaaatttatttgattaactaggtggaaaaatagtggtcacacgcattttatgtgcgtgaccacatttttc 33249701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 9809159 - 9809098
Alignment:
Q  190 tttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    ||||||||||||| |||||||||||||| ||||| ||||| ||||  ||||| |||||||||    
T  9809159 tttggttaactaaatggaaaaatagtggtcacgcgcatttgagttgcgtgactacatttttc 9809098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 17633365 - 17633426
Alignment:
Q  190 tttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    |||||||||||||||  ||||||||||| ||||| ||||||||||  ||||||| |||||||    
T  17633365 tttggttaactaagttaaaaaatagtggtcacgcgcattttagttgcgtgaccatatttttc 17633426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 144
Target Start/End: Complemental strand, 35544582 - 35544545
Alignment:
Q  107 ttttaaaaatttcagttaatcaaagatatagtatgtgt 144  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  35544582 ttttaaaaatttcagttaatcaaatatatggtatgtgt 35544545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 9810845 - 9810801
Alignment:
Q  190 tttggttaactaagtggaaaaatagtgggcacgcacattttagtt 234  Q
    ||||||||||||| ||||||||||| || ||||||||||| ||||    
T  9810845 tttggttaactaaatggaaaaatagaggtcacgcacatttgagtt 9810801  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 250
Target Start/End: Complemental strand, 42034967 - 42034780
Alignment:
Q  65 atgataggtagacacccttaatgtgtatatccatttgtacctttttaaaaa-tttcagttaatcaaagatatagtatgtgttaccacannnnnnnagttg 163  Q
    |||||||||||||| | |||||| ||| |||| ||||||||  | |||||| |||||||| |||||| |||| |||||||| | ||||       |||||    
T  42034967 atgataggtagacatctttaatgcgtacatccctttgtaccactctaaaaaatttcagttgatcaaatatatggtatgtgtaatcacatttttttagttg 42034868  T
Q  164 cacgaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    |  |||||||| |||| || ||| | |||||||||||||||||||||||||||| ||||  ||||||||||  |||||||||||||||    
T  42034867 cgtgaccactagttttccaaaatttatttggttaactaagtggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttc 42034780  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 19621477 - 19621541
Alignment:
Q  170 cactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt 234  Q
    |||||||||| |||||| | |||||||||||||||||||||||||||| ||||||||||||||||    
T  19621477 cactatttttccagaatttatttggttaactaagtggaaaaatagtggtcacgcacattttagtt 19621541  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 159 - 250
Target Start/End: Complemental strand, 35922848 - 35922756
Alignment:
Q  159 agttgcacgaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    ||||||| |||||||||||||||||||| | ||||||||||||| |||||||||||||| ||  | ||||||||||  |||||||||||||||    
T  35922848 agttgcatgaccactattttttcagaatttatttggttaactaaatggaaaaatagtggtcatacgcattttagttgcgtgaccacatttttc 35922756  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 43262710 - 43262771
Alignment:
Q  190 tttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    |||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||    
T  43262710 tttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgtgaccacatttttc 43262771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 167 - 250
Target Start/End: Complemental strand, 13312706 - 13312622
Alignment:
Q  167 gaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    ||||||||||||| || ||| | |||||||||||||||||||||||||| | ||||| ||||||||||  |||||||||||||||    
T  13312706 gaccactatttttccataatttatttggttaactaagtggaaaaatagttgccacgcgcattttagttgcgtgaccacatttttc 13312622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 217
Target Start/End: Original strand, 33958878 - 33959031
Alignment:
Q  64 aatgataggtagacacccttaatgtgtatatccatttgtaccttttt-aaaaatttcagttaatcaaagatatagtatgtgttaccacannnnnnnagtt 162  Q
    ||||||||||||||||||||||| ||||||||| ||||||||  | | |||||||||| |||| |||| |||| || | ||| | ||||       || |    
T  33958878 aatgataggtagacacccttaatatgtatatcc-tttgtaccactctgaaaaatttcacttaaccaaatatatggtctatgtaatcacatttttttagct 33958976  T
Q  163 gcacgaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgg 217  Q
    ||| |||||| |||||| |||||| | |||||| |||||||||||||||||||||    
T  33958977 gcatgaccacaatttttccagaatttatttggtcaactaagtggaaaaatagtgg 33959031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 250
Target Start/End: Complemental strand, 22169565 - 22169481
Alignment:
Q  167 gaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    ||||| |||||||||| ||| | |||||||||||| || |||||||||||| ||||| ||||||||||  |||||||||||||||    
T  22169565 gaccattattttttcaaaatttatttggttaactacgttgaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttc 22169481  T

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Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 190 - 249
Target Start/End: Original strand, 30704403 - 30704463
Alignment:
Q  190 tttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacattttt 249  Q
    |||||||||||||||||||||||||||| ||||| |||||||||| || ||||||||||||    
T  30704403 tttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttt 30704463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 2477360 - 2477306
Alignment:
Q  169 ccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgc 223  Q
    ||||||||||| |||||| | ||||||||||||||| |||||||||||| |||||    
T  2477360 ccactatttttacagaatttatttggttaactaagtcgaaaaatagtggccacgc 2477306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 43461706 - 43461752
Alignment:
Q  171 actattttttcagaatgtttttggttaactaagtggaaaaatagtgg 217  Q
    |||||||||||||||| | ||||||| ||||||||||||||||||||    
T  43461706 actattttttcagaatttatttggtttactaagtggaaaaatagtgg 43461752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 151
Target Start/End: Original strand, 35922617 - 35922698
Alignment:
Q  71 ggtagacacccttaatgtgtatatccatttgta-cctttttaaaaatttcagttaatcaaagatatagtatgtgttaccaca 151  Q
    ||||||||| ||||||||||| |||| |||||| |  | | |||||||||||||||||||| |||| |||||||| ||||||    
T  35922617 ggtagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaatcaaatatatggtatgtgtgaccaca 35922698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 151
Target Start/End: Original strand, 36169300 - 36169391
Alignment:
Q  61 aacaatgataggtagacacccttaatgtgtatatccatttgtacc-tttttaaaaatttcagttaatcaaagatatagtatgtgttaccaca 151  Q
    ||||||||||||||||||| |||||||||||  ||  ||||||||  ||| |||||||| |||||| |||| |||| ||| |||| ||||||    
T  36169300 aacaatgataggtagacactcttaatgtgtacttctctttgtaccactttgaaaaattttagttaaccaaatatatggtaggtgtgaccaca 36169391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 15221672 - 15221622
Alignment:
Q  167 gaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgg 217  Q
    |||||||||||||||||||| | ||| ||||| |||||||||||| |||||    
T  15221672 gaccactattttttcagaatttatttagttaattaagtggaaaaagagtgg 15221622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 151
Target Start/End: Complemental strand, 43262904 - 43262819
Alignment:
Q  67 gataggtagacacccttaatgtgtatatccatttgtac-ctttttaaaaatttcagttaatcaaagatatagtatgtgttaccaca 151  Q
    |||| |||||||||||||||||||| | || |||||||   ||| ||||||||||||||| |||| |||| || ||||| ||||||    
T  43262904 gataagtagacacccttaatgtgtacacccctttgtactactttgaaaaatttcagttaaccaaatatatggtctgtgtgaccaca 43262819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 43461904 - 43461835
Alignment:
Q  67 gataggtagacacccttaatgtgtatatccatttgtacct-ttttaaaaatttcagttaatcaaagatat 135  Q
    ||||||||||||| |||||||||| || || |||||| |  |||| ||||||||||||||||||| ||||    
T  43461904 gataggtagacactcttaatgtgtgtacccctttgtagcacttttgaaaatttcagttaatcaaatatat 43461835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 7156177 - 7156133
Alignment:
Q  190 tttggttaactaagtggaaaaatagtgggcacgcacattttagtt 234  Q
    ||||||||| |||||||||||||| ||| |||||| |||||||||    
T  7156177 tttggttaattaagtggaaaaataatggtcacgcatattttagtt 7156133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 38521996 - 38522052
Alignment:
Q  194 gttaactaagtggaaaaatagtgggcacgcacattttagtttgtgaccacatttttc 250  Q
    |||||||||||| ||||||||||| ||||| |||||||    |||||||||||||||    
T  38521996 gttaactaagtgtaaaaatagtggtcacgcgcattttatcgcgtgaccacatttttc 38522052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 1240902 - 1240985
Alignment:
Q  167 gaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtttgtgaccacatttttc 250  Q
    ||||||||||||| || ||| | ||||||||||||||||| |||||||||| ||||||||||||||||  ||||||||||||||    
T  1240902 gaccactatttttccataatttatttggttaactaagtgggaaaatagtggtcacgcacattttagttcatgaccacatttttc 1240985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 234
Target Start/End: Original strand, 5321963 - 5322030
Alignment:
Q  167 gaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt 234  Q
    |||||||||||||| ||||| | |||||||||||||||||||||||||||| ||||| ||||||||||    
T  5321963 gaccactatttttttagaatttatttggttaactaagtggaaaaatagtggtcacgcgcattttagtt 5322030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 250
Target Start/End: Original strand, 38606721 - 38606913
Alignment:
Q  60 caacaatgataggtagacacccttaatgtgtatatccatttgtaccttttt-aaaaatttcagttaatcaaagatatagtatgtgttaccacannnnnnn 158  Q
    ||||||||||||||||||| ||||||| | || | || ||||||||  | | |||||||||||||||  ||| |||| |||||||| |||| |           
T  38606721 caacaatgataggtagacatccttaatctttagacccctttgtaccactctgaaaaatttcagttaactaaatatatggtatgtgtgaccatattttttt 38606820  T
Q  159 agttgcacgaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    || |||  ||||||||| ||| |||||| | |||||||||||||||||||||||||||| ||| | |||||| |||  |||||||||||||||    
T  38606821 agctgcgtgaccactatgtttccagaatttatttggttaactaagtggaaaaatagtggtcacacgcattttcgttgcgtgaccacatttttc 38606913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 15714696 - 15714780
Alignment:
Q  167 gaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    |||||||||||||||  ||| | |||||||||||||||||||||||||||| |||| |||||||||||  ||||||| |||||||    
T  15714696 gaccactattttttcgaaatttatttggttaactaagtggaaaaatagtggtcacggacattttagttacgtgaccatatttttc 15714780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 1251478 - 1251561
Alignment:
Q  167 gaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtttgtgaccacatttttc 250  Q
    ||||||||||||| || ||| | ||||||||||||||||| |||||||||| | ||||||||||||||  ||| ||||||||||    
T  1251478 gaccactatttttccataatttatttggttaactaagtgggaaaatagtggtcgcgcacattttagttcatgatcacatttttc 1251561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 29367079 - 29367140
Alignment:
Q  190 tttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||  |||||||||||||||    
T  29367079 tttggttaactaagtggaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttc 29367140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 250
Target Start/End: Complemental strand, 5573887 - 5573804
Alignment:
Q  167 gaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    ||||||||||||| || ||| | |||||||||||||||||||||||||||| ||||  ||||||||||   ||||||||||||||    
T  5573887 gaccactattttt-caaaatttatttggttaactaagtggaaaaatagtggtcacgtgcattttagttccatgaccacatttttc 5573804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 250
Target Start/End: Original strand, 26493330 - 26493421
Alignment:
Q  159 agttgcacgaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    |||||| |||||| || ||||||||||| | |||| |||||||| |||||||||||| | ||||| || |||||||  |||||||||||||||    
T  26493330 agttgcgcgaccattaatttttcagaatttatttgattaactaaatggaaaaatagttgtcacgcgca-tttagttgcgtgaccacatttttc 26493421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 151
Target Start/End: Complemental strand, 6809959 - 6809920
Alignment:
Q  112 aaaatttcagttaatcaaagatatagtatgtgttaccaca 151  Q
    ||||||||||||||||||| ||||||||||||| ||||||    
T  6809959 aaaatttcagttaatcaaatatatagtatgtgtgaccaca 6809920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 24575908 - 24575958
Alignment:
Q  167 gaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgg 217  Q
    ||||||||||||| |||||| | ||||||||| |||||| |||||||||||    
T  24575908 gaccactatttttccagaatttatttggttaaataagtgaaaaaatagtgg 24575958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 63 - 250
Target Start/End: Complemental strand, 31303665 - 31303477
Alignment:
Q  63 caatgataggtagacacccttaatgtgtatatccatttgtacctttttaaaaa-tttcagttaatcaaagatatagtatgtgttaccacannnnnnnagt 161  Q
    ||||||| |||||||||| ||||||| || |||| ||| ||||  |  ||||| ||||||||||  ||| |||| |||||||| ||||||       |||    
T  31303665 caatgattggtagacacctttaatgtctacatccttttataccactcaaaaaaatttcagttaacaaaatatatggtatgtgtgaccacatttttt-agt 31303567  T
Q  162 tgcacgaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    |||  ||||||||| ||| |||||| | |||||||||||||||||||||||||||| ||||||||||||||||   ||||||||||||||    
T  31303566 tgcgtgaccactatgtttccagaatttatttggttaactaagtggaaaaatagtggtcacgcacattttagttgcatgaccacatttttc 31303477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 167 - 250
Target Start/End: Complemental strand, 4290934 - 4290851
Alignment:
Q  167 gaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    |||||||| ||||||||||| | |||||||||||||||||||||||||||| ||||||||  ||||||  |||||||||||||||    
T  4290934 gaccactagtttttcagaatttatttggttaactaagtggaaaaatagtggtcacgcaca-cttagttgcgtgaccacatttttc 4290851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 63 - 250
Target Start/End: Complemental strand, 21589836 - 21589647
Alignment:
Q  63 caatgataggtagacacccttaatgtgtatatccatttgtacctttttaaaaa-tttcagttaatcaaagatatagtatgtgttaccacannnnnnnagt 161  Q
    |||| |||| || |||||||||||||||| |||| ||| ||||  | |||||| |||||||||  |||| |||| || ||||| ||||||       |||    
T  21589836 caataatagctaaacacccttaatgtgtacatccgtttataccactctaaaaaatttcagttatccaaatatatggtctgtgtgaccacatttttttagt 21589737  T
Q  162 tgcacgaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    |||| ||||||||||||| |||||  | |||| |||| |||||||||||||||||| ||| | ||||||||||   ||||||||||||||    
T  21589736 tgcatgaccactatttttccagaacttatttgattaattaagtggaaaaatagtggtcacacgcattttagttgcatgaccacatttttc 21589647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 250
Target Start/End: Original strand, 28804883 - 28805074
Alignment:
Q  63 caatgataggtagacacccttaatgtgtatatccatttgtaccttttta-aaaatttcagttaatcaaagatatagtatgtgttaccacannnnnnn--- 158  Q
    |||||||||||||||||||||||| |||| | || |||||||| || || |||||||||||||| |||| |||| || | ||| ||||||              
T  28804883 caatgataggtagacacccttaatatgtacacccttttgtaccattctagaaaatttcagttaaccaaatatatggtctatgtgaccacatttttttttt 28804982  T
Q  159 agttgcacgaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    |||||   ||||||||| ||| || ||| | |||||||||||||||||||||||||||| | ||| |||||| ||| ||||||||||||||||    
T  28804983 agttgtgtgaccactatatttccataatttatttggttaactaagtggaaaaatagtggtc-cgcgcattttggttgtgtgaccacatttttc 28805074  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 5174974 - 5174910
Alignment:
Q  167 gaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacatttta 231  Q
    |||||||| ||||||||||| | |||| ||||||||||| ||||||||||| |||||||||||||    
T  5174974 gaccactaatttttcagaatttatttgattaactaagtgtaaaaatagtggtcacgcacatttta 5174910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 250
Target Start/End: Complemental strand, 20556866 - 20556790
Alignment:
Q  175 ttttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    |||||||||||| | |||||||||||||||||||||||| ||| |||||  |||||||||  |||||||||||||||    
T  20556866 ttttttcagaatttatttggttaactaagtggaaaaatattggtcacgcgtattttagttgcgtgaccacatttttc 20556790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 250
Target Start/End: Complemental strand, 21548664 - 21548476
Alignment:
Q  63 caatgataggtagacacccttaatgtgtatatccatttgtacctttttaaaaa-tttcagttaatcaaagatatagtatgtgttaccacannnnnnnagt 161  Q
    |||||||| ||||||| ||||||||||||||| | || ||||| || |||||| ||||||||||  ||| |||| || ||||| | || |       |||    
T  21548664 caatgataagtagacatccttaatgtgtatattcctt-gtaccattctaaaaaatttcagttaactaaatatatggtctgtgtgatcatatttgtttagt 21548566  T
Q  162 tgcacgaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    |||  ||||||||||||| |||||| | |||||||||||||||||||||| |||||  |||| ||||  ||||  |||||||||||||||    
T  21548565 tgcgtgaccactatttttccagaatttatttggttaactaagtggaaaaacagtggttacgcgcattcgagttgcgtgaccacatttttc 21548476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 250
Target Start/End: Original strand, 22740664 - 22740744
Alignment:
Q  171 actattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    |||||||||||||||| | |||||||||||||||||||||||| ||  |||||| |||||||||  ||||||| |||||||    
T  22740664 actattttttcagaatttatttggttaactaagtggaaaaataatgatcacgcatattttagttgcgtgaccatatttttc 22740744  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 231
Target Start/End: Original strand, 27523496 - 27523552
Alignment:
Q  175 ttttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacatttta 231  Q
    |||||||||||| | ||||||||| |||||||||||||||| | || ||||||||||    
T  27523496 ttttttcagaatttatttggttaattaagtggaaaaatagtagtcaagcacatttta 27523552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 234
Target Start/End: Complemental strand, 18312934 - 18312867
Alignment:
Q  167 gaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt 234  Q
    |||||||||||||  ||||| | || ||||||||||||||||||||||||| |||   ||||||||||    
T  18312934 gaccactatttttcaagaatttattaggttaactaagtggaaaaatagtggtcacatgcattttagtt 18312867  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 31303362 - 31303394
Alignment:
Q  71 ggtagacacccttaatgtgtatatccatttgta 103  Q
    ||||||||||||||||||||| |||||||||||    
T  31303362 ggtagacacccttaatgtgtacatccatttgta 31303394  T

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Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 67 - 224
Target Start/End: Original strand, 2430507 - 2430665
Alignment:
Q  67 gataggtagacacccttaatgtgtatatccatttgtaccttttt--aaaaatttcagttaatcaaagatatagtatgtgttaccacannnnnnnagttgc 164  Q
    ||||||||||||||||||||||||| || | |||||||| || |  |||||||||||||||  ||| ||||  | ||||| ||||         ||||||    
T  2430507 gataggtagacacccttaatgtgtacattcctttgtaccattctgaaaaaatttcagttaactaaatatatgatctgtgtgaccat-tttttttagttgc 2430605  T
Q  165 acgaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgca 224  Q
    | |||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||    
T  2430606 atgaccactattttttcagaatttatttggttaactaagtggaaaaatagtggtcacgca 2430665  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 138716 - 138800
Alignment:
Q  167 gaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    |||||||||||||||||||| | ||||||| |||||||||||||||||||| | |||||| |||||||  |||||||||||||||    
T  138716 gaccactattttttcagaatttatttggttgactaagtggaaaaatagtggtcgcgcacaatttagttgcgtgaccacatttttc 138800  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 146737 - 146821
Alignment:
Q  167 gaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    |||||||||||||||||||| | ||||||| |||||||||||||||||||| | |||||| |||||||  |||||||||||||||    
T  146737 gaccactattttttcagaatttatttggttgactaagtggaaaaatagtggtcgcgcacaatttagttgcgtgaccacatttttc 146821  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 161 - 250
Target Start/End: Original strand, 3620755 - 3620845
Alignment:
Q  161 ttgcacgaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    |||| ||||||||||||||||||||| | |||||||||||||||| ||||||||||| |||  | ||||||||| ||||| ||||||||||    
T  3620755 ttgcgcgaccactattttttcagaatttatttggttaactaagtgaaaaaatagtggtcacatatattttagttgtgtgatcacatttttc 3620845  T

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Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 159 - 250
Target Start/End: Original strand, 33815008 - 33815101
Alignment:
Q  159 agttgcacgaccactatttt-ttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    |||||| |||||||| |||| |||||||| | ||||||||||||||||||||||| |||| ||||| ||||||||||  |||||||||||||||    
T  33815008 agttgcgcgaccactttttttttcagaatttatttggttaactaagtggaaaaatggtggtcacgcgcattttagttgcgtgaccacatttttc 33815101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 167 - 250
Target Start/End: Complemental strand, 3222540 - 3222455
Alignment:
Q  167 gaccactattttttc-agaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    ||||||||| ||||| ||||| | |||||||||||||||||||||||||||| |||| |||||||||||  |||||| ||||||||    
T  3222540 gaccactatattttccagaatttatttggttaactaagtggaaaaatagtggtcacgtacattttagttgcgtgaccgcatttttc 3222455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 111 - 250
Target Start/End: Complemental strand, 9068569 - 9068430
Alignment:
Q  111 aaaaatttcagttaatcaaagatatagtatgtgttaccacannnnnnnagttgcacgaccactattttttcagaatgtttttggttaactaagtggaaaa 210  Q
    |||||||| ||||||||||| |||| |||||||| ||||||       ||||||  ||||||||||||| |||||  || || ||| |||||||||||||    
T  9068569 aaaaattttagttaatcaaatatatggtatgtgtgaccacatttttttagttgcgtgaccactatttttccagaa-cttatttgtttactaagtggaaaa 9068471  T
Q  211 atagtgggcacgcacattttag-tttgtgaccacatttttc 250  Q
    |||||   ||||| |||||||| | ||||||||||||||||    
T  9068470 atagtaatcacgcgcattttagatgtgtgaccacatttttc 9068430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 167 - 234
Target Start/End: Original strand, 10304701 - 10304768
Alignment:
Q  167 gaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt 234  Q
    ||||||| ||||| |||||| | |||||||||||||||| ||||||||||| ||||| ||||||||||    
T  10304701 gaccactttttttccagaatttatttggttaactaagtgaaaaaatagtggtcacgcgcattttagtt 10304768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 23595252 - 23595196
Alignment:
Q  167 gaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgc 223  Q
    |||||||| ||||||||||| | ||| |||||||||||||||||||||||| |||||    
T  23595252 gaccactaatttttcagaatttattttgttaactaagtggaaaaatagtggccacgc 23595196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 234
Target Start/End: Complemental strand, 2835175 - 2835003
Alignment:
Q  63 caatgataggtagacacccttaatgtgtatatccatttgtacc-tttttaaaaatttcagttaatcaaagatatagtatgtgttaccacannnnnnnagt 161  Q
    |||||||||||||||| |||||||||||||||| |||||||||  | | |||||||| |||||| |||| |||   | ||||| ||||||       |||    
T  2835175 caatgataggtagacagccttaatgtgtatatcaatttgtaccactctgaaaaatttaagttaaccaaatataccatctgtgtgaccacatttttttagt 2835076  T
Q  162 tgcacgaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt 234  Q
    ||    |||||||||||| || ||| | ||| |||| ||||||||||||||| ||| |||||  |||||||||    
T  2835075 tgtgtaaccactatttttccataatttatttagttagctaagtggaaaaataatggtcacgcgtattttagtt 2835003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 249
Target Start/End: Complemental strand, 9474714 - 9474655
Alignment:
Q  190 tttggttaactaagtggaaaaatagtgggcacgcacattttagtttgtgaccacattttt 249  Q
    |||||||||||||||| ||||||||||| ||| | ||||||| || ||||||||||||||    
T  9474714 tttggttaactaagtgaaaaaatagtggtcacacgcattttatttcgtgaccacattttt 9474655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 151
Target Start/End: Original strand, 20084581 - 20084666
Alignment:
Q  67 gataggtagacacccttaatgtgtatatccatttgtacc-tttttaaaaatttcagttaatcaaagatatagtatgtgttaccaca 151  Q
    ||||||| ||||||||||||||||| |||| ||| |||| |  | |||||||| |||||| |||| |||| |||||||| ||||||    
T  20084581 gataggttgacacccttaatgtgtacatccctttataccatgctgaaaaatttaagttaaccaaatatatggtatgtgtgaccaca 20084666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 250
Target Start/End: Complemental strand, 22608468 - 22608384
Alignment:
Q  167 gaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    |||||||| ||||||||||  | |||| |||||||| |  ||||||||||| || |||||||||||||   ||||||||||||||    
T  22608468 gaccactaatttttcagaaattatttgattaactaattcaaaaaatagtggtcatgcacattttagttgcatgaccacatttttc 22608384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 249
Target Start/End: Original strand, 24022 - 24104
Alignment:
Q  167 gaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtttgtgaccacattttt 249  Q
    |||||||| ||||||||||| | |||||| || |||||||||||||||||| ||||| ||||||| |  || |||||||||||    
T  24022 gaccactagtttttcagaatttatttggtaaaataagtggaaaaatagtggtcacgcgcattttaatgcgtaaccacattttt 24104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1126 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1126
Description:

Target: scaffold1126; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 250
Target Start/End: Original strand, 102 - 294
Alignment:
Q  61 aacaatgataggtagacacccttaatgtgtatatccatttgtacc--tttttaaaaatttcagttaatcaaagatatagtatgtgttaccacannnnnnn 158  Q
    |||||||| ||||||||| | |||||||||| ||   ||||||||  | || ||||||||||||||| |||| |||| |  ||||| | ||||           
T  102 aacaatgacaggtagacatctttaatgtgtacatttttttgtaccactcttgaaaaatttcagttaaccaaatatatggactgtgtgatcacattgtttt 201  T
Q  159 agttgcacgaccactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    ||||||  |||||||| ||||||| ||  | ||||| ||| |||||||||||||||||| || || ||||||||||  |||||||||||||||    
T  202 agttgcgtgaccactaatttttcaaaaattatttggataagtaagtggaaaaatagtggtcatgcgcattttagttgcgtgaccacatttttc 294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 249
Target Start/End: Original strand, 10617 - 10699
Alignment:
Q  168 accactattttttcagaatgtttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacattttt 249  Q
    |||| |||||||| ||||| | |||||||||||||||||||||||| ||| ||||   |||||||||  ||||||||||||||    
T  10617 accattattttttgagaatttatttggttaactaagtggaaaaataatggtcacgggtattttagttgcgtgaccacattttt 10699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 21420 - 21482
Alignment:
Q  69 taggtagacacccttaatgtgtatatccatttgtacc-tttttaaaaatttcagttaatcaaa 130  Q
    |||||||||||  |||||||||| |||||||| |||| |||| ||||||||||||||| ||||    
T  21420 taggtagacacttttaatgtgtacatccatttataccattttaaaaaatttcagttaaccaaa 21482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 87107 - 87046
Alignment:
Q  190 tttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttc 250  Q
    ||||||||||||||| |||||||||||| ||||   |||||||||  |||||||||||||||    
T  87107 tttggttaactaagtagaaaaatagtggtcacgtgtattttagttgcgtgaccacatttttc 87046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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