View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4304_low_1 (Length: 523)
Name: NF4304_low_1
Description: NF4304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4304_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 183 - 512
Target Start/End: Complemental strand, 27422930 - 27422602
Alignment:
| Q |
183 |
accccctacaacacaatttgtcagctacaaagcagtagccaccaacacataatccaagcagaaataaatggcttgcttccacctgttaataagcggctaa |
282 |
Q |
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| T |
27422930 |
accccgtacaacacaatttgtcagctacaaagcagtagccaccaacacataatccaagcagaaataaatggcttgcttccacctgttaataagcggctaa |
27422831 |
T |
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| Q |
283 |
agacttcaacaagccaaaataggtaaggaattccctttacgcgcctgaatcgccaacatgattaaataa-ataatataggagcgtcaattttgaagggca |
381 |
Q |
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| T |
27422830 |
agacttcaacaagccaaaataggtaaggaattccctttacgcgcctgaatcgccaacatgattaaataacataatataggagcgtcaattttgaagggca |
27422731 |
T |
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| Q |
382 |
acaaacgcaacactatataggggaattcagcataaccaacacaccagcaaaagaattcaatatgctctttattttaaagactcgatatactcatctagtt |
481 |
Q |
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| T |
27422730 |
acaaacgcaacactatataggggaaatcagcataaccaacacaccagc--aagaattcaatatgctctttattttaaagactcgatatactcatctagtt |
27422633 |
T |
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| Q |
482 |
ttattgcataacataacacaatgttgtattt |
512 |
Q |
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| T |
27422632 |
ttattgcataacacaacacaatgttatattt |
27422602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 92 - 163
Target Start/End: Complemental strand, 27423146 - 27423075
Alignment:
| Q |
92 |
agatgaggctgcagtgacgcgatgagttttggggctcgtggttgaaatcacagtgttggaattcatgatgtg |
163 |
Q |
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| T |
27423146 |
agatgaggctgcagtgacgcgatgagttttggggctcgtggttgaaatcacagtgttggaattcatgatgtg |
27423075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 27423199 - 27423147
Alignment:
| Q |
10 |
ataatactgataataggaagcaaaagaatgcttgcagctcgcgaatgtgtgta |
62 |
Q |
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| T |
27423199 |
ataatactgataatgggaagcaaaagaatgcttgcagctcgcgaatgtgtgta |
27423147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 316
Target Start/End: Original strand, 19683587 - 19683642
Alignment:
| Q |
260 |
tccacctgttaataagcggctaaagacttcaacaagccaaaataggtaaggaattcc |
316 |
Q |
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| T |
19683587 |
tccacctgttaataagcagctaaagacttcaa-aagccaaaataattaaggagttcc |
19683642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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