View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4304_low_2 (Length: 509)
Name: NF4304_low_2
Description: NF4304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4304_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 472; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Complemental strand, 29643799 - 29643312
Alignment:
| Q |
1 |
tatagcaatcttacgttggaaaagaaacaagacaaacacagattgatatatttgtaggcctataatggttttgatttacatcactaagatcagagtgact |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29643799 |
tatagcaatcttacgttggaaaagaaacaagacaaacacagattgatatatttgtaggcctataatggttttgatttacatcactaagatcagagtgact |
29643700 |
T |
|
| Q |
101 |
cagttcattctcattaacttcaaaaattgcagaagctgttaagacttaagatattaaatgagagcatatttacttttcacattatacagtgttttaacaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29643699 |
cagttcattctcattaacttcaaaaattgcagaagctgttaagacttaagatattaaatgagagcatatttacttttcacattatacagtgttttaacaa |
29643600 |
T |
|
| Q |
201 |
cttgagaagggaaatgtttcaatagaaatctttagaagtagaagccatgttatattctcttgatgctaagcttactggaattagcagaaataatacaaag |
300 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
29643599 |
cttgagaagggaaatttttcaatagaaatctttagaagtagaagccatgttatattctcttgatgctgagcttactggaattagcagaaataattcaaag |
29643500 |
T |
|
| Q |
301 |
attggtagagaattaccaatcaacaaaactttggggaacaaccaaaagaaactaaattaataagaagagtacatttgatccataatagccaatgaatcgg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29643499 |
attggtagagaattaccaatcaacaaaactttggggaacaaccaaaagaaactaaattaataagaagagtacatttgatccataatagccaatgaatcgg |
29643400 |
T |
|
| Q |
401 |
tatcaaactctattagtcaacactttcaaagaaatccaagagagacatcatctaaaactatcttatataaaatgagttctaagactat |
488 |
Q |
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| T |
29643399 |
tatcaaactctattagtcaacactttcaaagaaatccaagagagacatcatctaaaactatcttatataaaatgagttctaaaactat |
29643312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 146 - 488
Target Start/End: Complemental strand, 29648873 - 29648536
Alignment:
| Q |
146 |
ttaagatattaaatgagagcatatttacttttcacattatacagtgttttaacaacttgagaagggaaatgtttcaatagaaatctttagaagtagaagc |
245 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29648873 |
ttaagatattaaatgagagcatatgtacttttcacattatacagtgttttaacaacttgagaaggcaaatgtttcaatagaaatctttagaagtagaagc |
29648774 |
T |
|
| Q |
246 |
catgttatattctcttgatgctaagcttactggaattagcagaaataatacaaagattggtagagaattaccaatcaacaaaactttggggaacaaccaa |
345 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29648773 |
catgttatattctcttgatgctgagcttactggaattagcagaaataattcaaagattggtagagaattaccaatcaacaaaactttggggaacaaccaa |
29648674 |
T |
|
| Q |
346 |
aagaaactaaattaataagaagagtacatttgatccataatagccaatgaatcggtatcaaactctattagtcaacactttcaaagaaatccaagagaga |
445 |
Q |
| |
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|||| |||||||||||||||||||||||||| ||| ||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
29648673 |
aagacactaaattaataagaagagtacattt--tcc---atagccaatgagtcggtattaaactctattagtcaacactttcaaaaaaatccaagagaga |
29648579 |
T |
|
| Q |
446 |
catcatctaaaactatcttatataaaatgagttctaagactat |
488 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
29648578 |
gattatctaaaactatcttatataaaatgagttctaaaactat |
29648536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 234 - 450
Target Start/End: Original strand, 29596505 - 29596719
Alignment:
| Q |
234 |
agaagtagaagccatgttatattctcttgatgctaagcttactggaattagcagaaataatacaaagattggtagagaattaccaatcaacaaaactttg |
333 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| | ||||| ||| |||||||||||||||| ||||||||| |||||||||||||||||||||||| ||| |
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| T |
29596505 |
agaagtagaaaccatgttatattctcttgatgtttagctttctgaaattagcagaaataattcaaagattgatagagaattaccaatcaacaaaacattg |
29596604 |
T |
|
| Q |
334 |
gggaacaaccaaaagaaactaaattaataagaagagtacatttg-atccataatagccaatgaatcggtatcaaactctattagtcaacactttcaaaga |
432 |
Q |
| |
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||||| ||||||||| ||||||||||| ||| |||||||||| ||||||| |||||| | || ||| |||||| ||||||||||||||||||||| |
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| T |
29596605 |
gggaataaccaaaagtcactaaattaatgagaggagtacatttttatccata---gccaataagtcaatattaaactcaattagtcaacactttcaaaga |
29596701 |
T |
|
| Q |
433 |
aatccaagagagacatca |
450 |
Q |
| |
|
||||||| |||||||||| |
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| T |
29596702 |
aatccaaaagagacatca |
29596719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 29649753 - 29649660
Alignment:
| Q |
1 |
tatagcaatcttacgttggaaaagaaacaagacaaacacagattgatatatttgtaggcctataatggttttgatttacatcactaagatcaga |
94 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29649753 |
tatagcaatcttatattgaaaaagaaacaagacaaacacagtttaatatatttgtatgcctataatggttttgatttacatcactaagatcaga |
29649660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 456 - 488
Target Start/End: Original strand, 29820302 - 29820334
Alignment:
| Q |
456 |
aactatcttatataaaatgagttctaagactat |
488 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
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|
| T |
29820302 |
aactatcttatataaaatgagttctaaaactat |
29820334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 226 - 334
Target Start/End: Complemental strand, 19820270 - 19820162
Alignment:
| Q |
226 |
aaatctttagaagtagaagccatgttatattctcttgatgctaagcttactggaattagcagaaataatacaaagattggtagagaattaccaatcaaca |
325 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||| |||||| ||| |||||||||||||||| ||||||||| ||| |||||||||||||||| |
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| T |
19820270 |
aaatctttacaagtagaagccatgatatattctcttgatgccaagcttgctgaaattagcagaaataattcaaagattgatagggaattaccaatcaaca |
19820171 |
T |
|
| Q |
326 |
aaactttgg |
334 |
Q |
| |
|
||||||||| |
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|
| T |
19820170 |
aaactttgg |
19820162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 230 - 362
Target Start/End: Original strand, 24253923 - 24254055
Alignment:
| Q |
230 |
ctttagaagtagaagccatgttatattctcttgatgctaagcttactggaattagcagaaataatacaaagattggtagagaattaccaatcaacaaaac |
329 |
Q |
| |
|
|||| ||| ||||||||||||||| || | ||||||| || ||| ||| |||| || |||| ||| ||||| ||| ||| |||||| ||||||||||||| |
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|
| T |
24253923 |
ctttggaaatagaagccatgttatgttttattgatgcaaatcttgctgaaatttgctgaaagaattcaaagtttgatagggaattatcaatcaacaaaac |
24254022 |
T |
|
| Q |
330 |
tttggggaacaaccaaaagaaactaaattaata |
362 |
Q |
| |
|
||||||| | ||||| | || | |||||||||| |
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|
| T |
24254023 |
tttgggggaaaaccatatgatagtaaattaata |
24254055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 226 - 362
Target Start/End: Original strand, 20863619 - 20863755
Alignment:
| Q |
226 |
aaatctttagaagtagaagccatgttatattctcttgatgctaagcttactggaattagcagaaataatacaaagattggtagagaattaccaatcaaca |
325 |
Q |
| |
|
|||||||| |||||| | ||||||||| |||| || |||| || ||| ||| |||| ||||||| ||| ||||||||| ||| |||| ||||||||| | |
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|
| T |
20863619 |
aaatctttggaagtaaataccatgttattttctattcatgcaaatcttgctgaaatttgcagaaagaattcaaagattgatagggaatcaccaatcaaga |
20863718 |
T |
|
| Q |
326 |
aaactttggggaacaaccaaaagaaactaaattaata |
362 |
Q |
| |
|
||||||||||| | ||||| | || | |||||||||| |
|
|
| T |
20863719 |
aaactttgggggaaaaccatatgatagtaaattaata |
20863755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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