View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4304_low_5 (Length: 412)
Name: NF4304_low_5
Description: NF4304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4304_low_5 |
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| [»] scaffold0457 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 26 - 399
Target Start/End: Complemental strand, 43805022 - 43804656
Alignment:
| Q |
26 |
atgataaaatactacaacatctacttaaaatgcaacctatttcgattctatcatttgactaacaagttaaaacgttcacaacagtctttgaatctaaagt |
125 |
Q |
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|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43805022 |
atgataaaatactaca---tctacttaaaatgcaacctatctcgattctatcatttgactaacaagttaaaacgttcacaacagtctttgaatctaaagt |
43804926 |
T |
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| Q |
126 |
aaagataactggtttgaactctaatttttgtatccactcgatagctgccaataagacggaagcctcacctccttaacattcaagataggttgcacccaca |
225 |
Q |
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| T |
43804925 |
aaagataactggtttgaactctaatttttgtatccact----agctgccaataagacggaagcctcacctccttaacattcaagataggttgcacccaca |
43804830 |
T |
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| Q |
226 |
aagtttttctcccataaatatttcatatgcgtcccttacgcaaatctcaattccaatctaattgtgctgctcagaaatagacgtgtcgctgccatgtttg |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43804829 |
aagtttttctcccataaatatttcatatgcgtcccttaagcaaatctcaattccaatctaattgtgctgctcagaaatagacgtgtcgctgccatgtttg |
43804730 |
T |
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| Q |
326 |
accattctgaacaggctgttgtagacgagcagcctgcccattttcctgatgcaccaccctccactctctaagta |
399 |
Q |
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| T |
43804729 |
accattctgaacaggctgttgtagacgagcagcctgtccattttcctgatgcaccaccctccactctctaagta |
43804656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0457 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0457
Description:
Target: scaffold0457; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 103 - 281
Target Start/End: Original strand, 3517 - 3697
Alignment:
| Q |
103 |
acaacagtctttgaatctaaagtaaagataactggtttgaactctaatttttgtatccactcgatagctgccaataagacggaagcctca-cctccttaa |
201 |
Q |
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| T |
3517 |
acaacactcttcaaatccaaagtaaagatagtttgcttgaactcttattctcgcatccacttgattgctgctaataagtcggaagcctcaccctcattaa |
3616 |
T |
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| Q |
202 |
cattcaagataggttgcacccacaaagt-ttttctcccataaatatttcatatgcgtcccttacgcaaatctcaattccaa |
281 |
Q |
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| T |
3617 |
cattcaaaatatatcgcaactgcaaagtctttgctcccataaacatttcatactcgtcccttaagcaaatcccaattccaa |
3697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 110 - 219
Target Start/End: Complemental strand, 2442074 - 2441964
Alignment:
| Q |
110 |
tctttgaatctaaagtaaagataactggtttgaactctaatttttgtatccactcgatagctgccaataagacggaagcctca-cctccttaacattcaa |
208 |
Q |
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|||| ||||||| | ||||||||||| | ||||||||||||||||| | |||||||||| ||| |||||| || |||| | |||||||||||||||| |
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| T |
2442074 |
tcttagaatctagaataaagataacttgcttgaactctaatttttgcacccactcgataattgctaataagcatgacgccttagcctccttaacattcaa |
2441975 |
T |
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| Q |
209 |
gataggttgca |
219 |
Q |
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| T |
2441974 |
cataggttgca |
2441964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 151
Target Start/End: Complemental strand, 45039306 - 45039197
Alignment:
| Q |
42 |
acatctacttaaaatgcaacctatttcgattctatcatttgactaacaagttaaaac-gttcacaacagtctttgaatctaaagtaaagataactggttt |
140 |
Q |
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| T |
45039306 |
acatctacttaaaatggaacctacctctattctattatt-gactcataggttaaaagagttcacagcactctttgaatcaagagtaaaaataacttgttt |
45039208 |
T |
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| Q |
141 |
gaactctaatt |
151 |
Q |
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| T |
45039207 |
gaactctaatt |
45039197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 12158761 - 12158712
Alignment:
| Q |
102 |
cacaacagtctttgaatctaaagtaaagataactggtttgaactctaatt |
151 |
Q |
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| T |
12158761 |
cacaacactctttgaatctaaagtaaagataactttgttgaactctaatt |
12158712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 219
Target Start/End: Complemental strand, 28790327 - 28790237
Alignment:
| Q |
130 |
ataactggtttgaactctaatttttgtatccactcgatagctgccaataagacggaagcctcacc-tccttaacattcaagataggttgca |
219 |
Q |
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| T |
28790327 |
ataacttgattgaactctaattgttgtatcaacacgataattgctaataagtctgaagcctcaccatctttaacattcaaaatatgttgca |
28790237 |
T |
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