View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4304_low_6 (Length: 280)
Name: NF4304_low_6
Description: NF4304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4304_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 47822446 - 47822716
Alignment:
| Q |
1 |
caattatgagttgttagttgcacatccaaccatgagtatgttaaatattgaatatataaacgaaatatgaatataaagnnnnnnnnnnnnnnnnnnnnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47822446 |
caattatgagttgttagttgcacatccaaccattagtatgttaaatattgaatatataaacgaaatatgaatataaagttttttattttatttttatttt |
47822545 |
T |
|
| Q |
101 |
nngaaaacttggtgtcaaatcctaaaccattgtgcccttcaagacttccaacagtcttgaaaatcaatttcaaaacaataagtgcaaaaatatcttcaaa |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
47822546 |
atgaaaacttggtgtcaaatcctaaaccgttgtgcccttcaagacttccaacagtcttcaaaatcaatttcaaaacaataagtgcaaaaatatcttcaaa |
47822645 |
T |
|
| Q |
201 |
taaagatggagatttcaaaatttattttgtggaagaataatatgagaaaccttttggagaaaaagtataat |
271 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
47822646 |
taaaaatggagatttcaaaatttattttgtggaagaataatatgagaaatcttttggagaaaaagtataat |
47822716 |
T |
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