View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4304_low_7 (Length: 272)
Name: NF4304_low_7
Description: NF4304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4304_low_7 |
 | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
| [»] scaffold0184 (1 HSPs) |
| | |
|
| [»] scaffold0078 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 894708 - 894464
Alignment:
| Q |
18 |
agaaattcttgtgggttgttagagttccaagtaaagttgttagctctgcttattttgttggagaaaaagatgatccattagattatttaccaagtgattt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
894708 |
agaaattcttgtgggttgttagagttccaagtaaagttgttagctctgcttattttgttggagaaaaagatgatccattagattatttaccaagtggttt |
894609 |
T |
|
| Q |
118 |
tctggaaagaaccaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttgagtcattgt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
894608 |
tctggaaagaaccaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttgagtcattgt |
894509 |
T |
|
| Q |
218 |
ggttggggttcaactttggagagtgtggttaatggtgtgcctatg |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
894508 |
ggttggggttcaactttggagagtgtggttaatggtgtgcctatg |
894464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 23 - 259
Target Start/End: Original strand, 905940 - 906176
Alignment:
| Q |
23 |
ttcttgtgggttgttagagttccaagtaaagttgttagctctgcttattttgttggagaaaaagatgatccattagattatttaccaagtgattttctgg |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||| |||||||||| || ||| ||| |
|
|
| T |
905940 |
ttcttgtgggttgttagagttccaagtaaagatgttaactctgcttattttgttggagcaaaagatgatccattagagtatttaccaaatggtttcttgg |
906039 |
T |
|
| Q |
123 |
aaagaaccaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttgagtcattgtggttg |
222 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
906040 |
aaagaaacaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtgggtttttgagtcattgtggttg |
906139 |
T |
|
| Q |
223 |
gggttcaactttggagagtgtggttaatggtgtgcct |
259 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
906140 |
gggttcaactttggagactgtggttaatggggtgcct |
906176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 81 - 262
Target Start/End: Original strand, 23423711 - 23423892
Alignment:
| Q |
81 |
aaaaagatgatccattagattatttaccaagtgattttctggaaagaaccaaagaaaatggattggttgttccatcatgggcaccacaagttgagattct |
180 |
Q |
| |
|
|||| |||||||||||| ||||||||||| | ||| ||||||| || ||||| | || ||||| |||||||||||||| ||||||||||| ||||| |
|
|
| T |
23423711 |
aaaaggatgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattct |
23423810 |
T |
|
| Q |
181 |
tggtcatggatcaattggtggttttttgagtcattgtggttggggttcaactttggagagtgtggttaatggtgtgcctatg |
262 |
Q |
| |
|
| ||||| | |||| |||||||||||||| ||||||||||||| |||||| ||| ||| || | ||| |||||||||||||| |
|
|
| T |
23423811 |
tagtcatagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtttagtttatggtgtgcctatg |
23423892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 262
Target Start/End: Complemental strand, 548888 - 548712
Alignment:
| Q |
86 |
gatgatccattagattatttaccaagtgattttctggaaagaaccaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtc |
185 |
Q |
| |
|
|||||||||||| ||||||||||| | ||| ||||||| || ||||| | || ||||| |||||||||||||| ||||||||||| |||||| ||| |
|
|
| T |
548888 |
gatgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtc |
548789 |
T |
|
| Q |
186 |
atggatcaattggtggttttttgagtcattgtggttggggttcaactttggagagtgtggttaatggtgtgcctatg |
262 |
Q |
| |
|
|| | |||| |||||||||||||| ||||||||||||| |||||| ||| ||| || | ||| |||||||||||||| |
|
|
| T |
548788 |
atagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtttagtttatggtgtgcctatg |
548712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 258
Target Start/End: Original strand, 2436893 - 2437007
Alignment:
| Q |
144 |
tggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttgagtcattgtggttggggttcaactttggagagtgt |
243 |
Q |
| |
|
||||| ||||||||||||||||||| ||| | || ||| |||| ||||| |||||||||| |||||||| ||||| ||| |||||| | |||||||| |
|
|
| T |
2436893 |
tggttattccatcatgggcaccacaggttcaaatccttagtcacagatcagttggtggtttcttgagtcactgtggctggaattcaacccttgagagtgt |
2436992 |
T |
|
| Q |
244 |
ggttaatggtgtgcc |
258 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
2436993 |
ggtgcatggtgtgcc |
2437007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 259
Target Start/End: Complemental strand, 10201936 - 10201868
Alignment:
| Q |
191 |
tcaattggtggttttttgagtcattgtggttggggttcaactttggagagtgtggttaatggtgtgcct |
259 |
Q |
| |
|
|||||||| || ||| ||||||||||||||||| ||||||| | ||||||||||| |||||||||||| |
|
|
| T |
10201936 |
tcaattggagggtttgtgagtcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcct |
10201868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 259
Target Start/End: Complemental strand, 10209009 - 10208941
Alignment:
| Q |
191 |
tcaattggtggttttttgagtcattgtggttggggttcaactttggagagtgtggttaatggtgtgcct |
259 |
Q |
| |
|
|||||||| || ||| ||||||||||||||||| ||||||| | ||||||||||| |||||||||||| |
|
|
| T |
10209009 |
tcaattggagggtttgtgagtcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcct |
10208941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 258
Target Start/End: Original strand, 1963481 - 1963595
Alignment:
| Q |
144 |
tggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttgagtcattgtggttggggttcaactttggagagtgt |
243 |
Q |
| |
|
||||||||||||||||||||||||| || | || ||| |||| | || |||||||| |||||| ||||||||||||| |||||| | |||||||| |
|
|
| T |
1963481 |
tggttgttccatcatgggcaccacagattcaaatccttagtcacagttccattggtgggtttttgtctcattgtggttggaattcaacccttgagagtgt |
1963580 |
T |
|
| Q |
244 |
ggttaatggtgtgcc |
258 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
1963581 |
ggtgtatggtgtgcc |
1963595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 566377 - 566313
Alignment:
| Q |
157 |
atgggcaccacaagttgagattcttggtcatggatcaattggtggttttttgagtcattgtggtt |
221 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | ||||||| ||| ||||| |||||| ||||| |
|
|
| T |
566377 |
atgggcaccacaagttgaaattcttggtcatagttcaattgatggatttttatgtcattttggtt |
566313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 131; Significance: 5e-68; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 20 - 258
Target Start/End: Complemental strand, 8294658 - 8294420
Alignment:
| Q |
20 |
aaattcttgtgggttgttagagttccaagtaaagttgttagctctgcttattttgttggagaaaaagatgatccattagattatttaccaagtgattttc |
119 |
Q |
| |
|
||||||||||||||||| |||| |||||||||| | ||| ||||| |||||| |||| |||| ||||||||||||| |||||||||| || |||| |
|
|
| T |
8294658 |
aaattcttgtgggttgtgagagctccaagtaaaaattctagttctgcctattttagtggacaaaacaatgatccattagagtatttaccaaatggttttt |
8294559 |
T |
|
| Q |
120 |
tggaaagaaccaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttgagtcattgtgg |
219 |
Q |
| |
|
|||||||||| |||||||||||| | || ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
8294558 |
tggaaagaacaaaagaaaatggactagtagttgcatcatgggcaccacaagttgagattcttggtcatggatcaattggtgggtttttaagtcattgtgg |
8294459 |
T |
|
| Q |
220 |
ttggggttcaactttggagagtgtggttaatggtgtgcc |
258 |
Q |
| |
|
|||| ||||||||||||||||||||||||| || ||||| |
|
|
| T |
8294458 |
ttggagttcaactttggagagtgtggttaacggcgtgcc |
8294420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 23 - 249
Target Start/End: Original strand, 33257100 - 33257326
Alignment:
| Q |
23 |
ttcttgtgggttgttagagttccaagtaaagttgttagctctgcttattttgttggagaaaaagatgatccattagattatttaccaagtgattttctgg |
122 |
Q |
| |
|
|||||||||||||| |||| |||||||||| | ||| |||||||||||| |||| |||| |||| |||||||| |||||||||| | |||| | | |
|
|
| T |
33257100 |
ttcttgtgggttgtgagagctccaagtaaacattctagttctgcttattttaatggacaaaacaatgaaccattagagtatttaccaaacggttttgtcg |
33257199 |
T |
|
| Q |
123 |
aaagaaccaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttgagtcattgtggttg |
222 |
Q |
| |
|
||||||| ||||| || ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33257200 |
aaagaacaaaagagaagggattagttgttacatcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttaagtcattgtggttg |
33257299 |
T |
|
| Q |
223 |
gggttcaactttggagagtgtggttaa |
249 |
Q |
| |
|
| ||||||||||||||||||||||||| |
|
|
| T |
33257300 |
gagttcaactttggagagtgtggttaa |
33257326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 223
Target Start/End: Complemental strand, 845147 - 845027
Alignment:
| Q |
103 |
tttaccaagtgattttctggaaagaaccaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtggt |
202 |
Q |
| |
|
|||||||| || |||| |||||||||| |||| || || || || ||||||| |||||||||||| |||| |||||||||||| | ||||||||||| |
|
|
| T |
845147 |
tttaccaaatggttttttggaaagaacaaaagggaaaggtttagtagttccatattgggcaccacaaattgaaattcttggtcatagttcaattggtggg |
845048 |
T |
|
| Q |
203 |
tttttgagtcattgtggttgg |
223 |
Q |
| |
|
||||| | ||||||||||||| |
|
|
| T |
845047 |
tttttaactcattgtggttgg |
845027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 223
Target Start/End: Complemental strand, 870385 - 870311
Alignment:
| Q |
149 |
gttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttgagtcattgtggttgg |
223 |
Q |
| |
|
||||||| |||||||||||| |||| |||||||||||| | ||||||||||| ||||| | ||||||||||||| |
|
|
| T |
870385 |
gttccatattgggcaccacaaattgaaattcttggtcatagttcaattggtgggtttttaactcattgtggttgg |
870311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 23 - 249
Target Start/End: Original strand, 1218 - 1444
Alignment:
| Q |
23 |
ttcttgtgggttgttagagttccaagtaaagttgttagctctgcttattttgttggagaaaaagatgatccattagattatttaccaagtgattttctgg |
122 |
Q |
| |
|
|||||||||||||| |||| |||||||||| | ||| |||||||||||| |||| |||| |||| |||||||| |||||||||| | |||| | | |
|
|
| T |
1218 |
ttcttgtgggttgtgagagctccaagtaaacattctagttctgcttattttaatggacaaaacaatgaaccattagagtatttaccaaacggttttgtcg |
1317 |
T |
|
| Q |
123 |
aaagaaccaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttgagtcattgtggttg |
222 |
Q |
| |
|
||||||| ||||| || ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1318 |
aaagaacaaaagagaagggattagttgttacatcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttaagtcattgtggttg |
1417 |
T |
|
| Q |
223 |
gggttcaactttggagagtgtggttaa |
249 |
Q |
| |
|
| ||||||||||||||||||||||||| |
|
|
| T |
1418 |
gagttcaactttggagagtgtggttaa |
1444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 241
Target Start/End: Complemental strand, 15309 - 15188
Alignment:
| Q |
120 |
tggaaagaaccaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttgagtcattgtgg |
219 |
Q |
| |
|
||||||||||||||||||| || || || | ||||||||||||| |||||||| || ||| ||| | ||| ||||||| ||||| ||||||||||| |
|
|
| T |
15309 |
tggaaagaaccaaagaaaaaggttttattttggcatcatgggcacctcaagttgaaatacttaaacatagttcagttggtggatttttaagtcattgtgg |
15210 |
T |
|
| Q |
220 |
ttggggttcaactttggagagt |
241 |
Q |
| |
|
|||| |||| |||||||||| |
|
|
| T |
15209 |
ttggaattcagttttggagagt |
15188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 241
Target Start/End: Original strand, 57535 - 57656
Alignment:
| Q |
120 |
tggaaagaaccaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttgagtcattgtgg |
219 |
Q |
| |
|
||||||||||||||||||| || || || | ||||||||||||| |||||||| || ||| ||| | ||| ||||||| ||||| ||||||||||| |
|
|
| T |
57535 |
tggaaagaaccaaagaaaaaggttttattttggcatcatgggcacctcaagttgaaatacttaaacatagttcagttggtggatttttaagtcattgtgg |
57634 |
T |
|
| Q |
220 |
ttggggttcaactttggagagt |
241 |
Q |
| |
|
|||| |||| |||||||||| |
|
|
| T |
57635 |
ttggaattcagttttggagagt |
57656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 22246 - 22298
Alignment:
| Q |
120 |
tggaaagaaccaaagaaaatggattggttgttccatcatgggcaccacaagtt |
172 |
Q |
| |
|
|||||||||| |||||||| || ||| || | ||||||||||||||||||||| |
|
|
| T |
22246 |
tggaaagaacaaaagaaaaaggtttgattttaccatcatgggcaccacaagtt |
22298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 262
Target Start/End: Original strand, 13653230 - 13653300
Alignment:
| Q |
192 |
caattggtggttttttgagtcattgtggttggggttcaactttggagagtgtggttaatggtgtgcctatg |
262 |
Q |
| |
|
||||||||| |||||||| ||| |||| ||| ||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
13653230 |
caattggtgcttttttgacacatagtggatggaattctactttggagagtgtggtttgtggtgtgcctatg |
13653300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 230
Target Start/End: Original strand, 5906141 - 5906227
Alignment:
| Q |
144 |
tggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttgagtcattgtggttggggttcaa |
230 |
Q |
| |
|
||||| |||||||||||||||| || |||| || ||| |||| |||| ||||||| || |||||||||||||||||| |||||| |
|
|
| T |
5906141 |
tggttattccatcatgggcacctcagattgaaatccttagtcacatatcagttggtggattcttgagtcattgtggttggagttcaa |
5906227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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