View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4306-Insertion-27 (Length: 164)

Name: NF4306-Insertion-27
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4306-Insertion-27
NF4306-Insertion-27
[»] chr3 (14 HSPs)
chr3 (1-91)||(34128403-34128496)
chr3 (1-89)||(30341200-30341289)
chr3 (1-89)||(3481645-3481734)
chr3 (1-89)||(17369147-17369236)
chr3 (1-89)||(15762556-15762644)
chr3 (1-89)||(15767717-15767805)
chr3 (2-89)||(17358628-17358716)
chr3 (2-89)||(30338096-30338184)
chr3 (1-89)||(54271374-54271463)
chr3 (1-89)||(20090187-20090276)
chr3 (1-89)||(20095312-20095401)
chr3 (1-85)||(55129218-55129304)
chr3 (1-91)||(3476186-3476277)
chr3 (1-89)||(4116946-4117035)
[»] chr8 (8 HSPs)
chr8 (1-90)||(32016181-32016270)
chr8 (1-91)||(17955128-17955219)
chr8 (1-89)||(32011007-32011095)
chr8 (1-89)||(43998542-43998631)
chr8 (2-89)||(42513844-42513932)
chr8 (1-79)||(24885386-24885465)
chr8 (1-89)||(2165390-2165480)
chr8 (8-89)||(21641123-21641205)
[»] chr7 (17 HSPs)
chr7 (1-89)||(21080317-21080406)
chr7 (1-89)||(47999456-47999544)
chr7 (1-90)||(2233947-2234037)
chr7 (1-89)||(47994281-47994369)
chr7 (1-89)||(33238483-33238572)
chr7 (1-89)||(32211961-32212050)
chr7 (1-89)||(33243660-33243749)
chr7 (1-91)||(19308870-19308961)
chr7 (1-89)||(12935146-12935235)
chr7 (1-89)||(42572662-42572751)
chr7 (7-89)||(47544745-47544828)
chr7 (1-89)||(17496162-17496251)
chr7 (1-89)||(17556963-17557052)
chr7 (1-89)||(43893604-43893693)
chr7 (1-89)||(47176492-47176581)
chr7 (1-65)||(16538694-16538758)
chr7 (1-65)||(16626904-16626968)
[»] chr1 (14 HSPs)
chr1 (1-89)||(5725427-5725516)
chr1 (1-89)||(3585363-3585452)
chr1 (1-89)||(34317811-34317899)
chr1 (1-89)||(36684241-36684329)
chr1 (90-164)||(47779611-47779684)
chr1 (1-89)||(27711751-27711840)
chr1 (1-89)||(37403995-37404085)
chr1 (1-89)||(37409114-37409204)
chr1 (1-90)||(50958977-50959069)
chr1 (1-89)||(5730833-5730922)
chr1 (1-88)||(11250701-11250790)
chr1 (1-89)||(27716871-27716962)
chr1 (1-91)||(48245966-48246057)
chr1 (100-158)||(47786600-47786657)
[»] chr2 (10 HSPs)
chr2 (1-89)||(4162891-4162980)
chr2 (1-89)||(42728146-42728234)
chr2 (1-87)||(28751019-28751106)
chr2 (1-91)||(42722975-42723065)
chr2 (1-91)||(44754130-44754220)
chr2 (1-89)||(44096783-44096871)
chr2 (2-89)||(44759298-44759385)
chr2 (1-89)||(40518043-40518134)
chr2 (1-90)||(40392747-40392837)
chr2 (1-89)||(40520066-40520158)
[»] scaffold0055 (1 HSPs)
scaffold0055 (1-89)||(3505-3593)
[»] scaffold0052 (1 HSPs)
scaffold0052 (1-89)||(80942-81030)
[»] scaffold0594 (1 HSPs)
scaffold0594 (1-89)||(8530-8619)
[»] chr6 (11 HSPs)
chr6 (1-89)||(2817397-2817486)
chr6 (1-89)||(21402169-21402258)
chr6 (1-89)||(22697768-22697857)
chr6 (1-89)||(22702944-22703033)
chr6 (1-89)||(29490808-29490897)
chr6 (1-89)||(34142843-34142932)
chr6 (1-89)||(34155459-34155548)
chr6 (1-89)||(6727773-6727862)
chr6 (1-89)||(24190650-24190739)
chr6 (1-89)||(34376526-34376615)
chr6 (2-92)||(31983538-31983629)
[»] scaffold0014 (2 HSPs)
scaffold0014 (1-89)||(32026-32114)
scaffold0014 (1-89)||(26854-26942)
[»] chr4 (20 HSPs)
chr4 (1-89)||(36354623-36354710)
chr4 (1-89)||(8979863-8979952)
chr4 (1-89)||(8984983-8985072)
chr4 (1-89)||(13700938-13701027)
chr4 (1-89)||(21304531-21304620)
chr4 (1-89)||(53798391-53798480)
chr4 (1-89)||(54991904-54991993)
chr4 (1-89)||(39999550-39999638)
chr4 (1-89)||(40004508-40004596)
chr4 (1-89)||(54343684-54343772)
chr4 (1-89)||(54348838-54348926)
chr4 (1-89)||(21299411-21299500)
chr4 (1-89)||(41393920-41394009)
chr4 (1-91)||(54990386-54990477)
chr4 (1-89)||(9763269-9763358)
chr4 (1-89)||(36359809-36359896)
chr4 (1-91)||(51018700-51018791)
chr4 (1-89)||(13695819-13695908)
chr4 (1-89)||(13711432-13711521)
chr4 (1-89)||(4207104-4207192)
[»] chr5 (13 HSPs)
chr5 (1-89)||(17510486-17510575)
chr5 (1-89)||(42020001-42020090)
chr5 (1-89)||(43580088-43580179)
chr5 (6-89)||(41859017-41859102)
chr5 (1-89)||(41853897-41853988)
chr5 (1-91)||(26709750-26709841)
chr5 (1-91)||(26979484-26979575)
chr5 (1-90)||(42024781-42024871)
chr5 (1-89)||(17505381-17505472)
chr5 (1-89)||(1413068-1413158)
chr5 (1-89)||(36254579-36254668)
chr5 (1-89)||(24770601-24770690)
chr5 (1-89)||(24776055-24776144)
[»] scaffold0517 (1 HSPs)
scaffold0517 (1-89)||(3991-4081)
[»] scaffold0166 (2 HSPs)
scaffold0166 (1-89)||(12982-13071)
scaffold0166 (1-89)||(18439-18528)


Alignment Details
Target: chr3 (Bit Score: 72; Significance: 5e-33; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 5e-33
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 34128496 - 34128403
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagt---ttttccattatacactagagttccaacata 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||   |||||||||||||||||| |||||||||||    
T  34128496 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactagtatactccaagttttttttccattatacactagtgttccaacata 34128403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 30341289 - 30341200
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagttttt-ccattatacactagagttccaaca 89  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||| ||| |||||||||| |||||||||    
T  30341289 gtttctccatccttgtgtttacattccaaaggctccacataacaactagtatactccaagtttttgccaatatacactagtgttccaaca 30341200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 3481734 - 3481645
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagt-ttttccattatacactagagttccaaca 89  Q
    |||||||||||||||||||||||||||||||||||||||||   |||| |||||||||||| |||| ||||||||||||| |||||||||    
T  3481734 gtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttccaaca 3481645  T

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Target: chr3; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 17369147 - 17369236
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaag-tttttccattatacactagagttccaaca 89  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||| || ||| ||||||||||||| ||||| |||||||||    
T  17369147 gtttctccatccttgtgtttacattccaaaggctccacaaaccaactagtataatcgaagttttttccattatatactagtgttccaaca 17369236  T

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Target: chr3; HSP #5
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 15762644 - 15762556
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagtttttccattatacactagagttccaaca 89  Q
    |||||||||||||| ||||||||| ||||||||||||||||   |||| |||||||||||||||| ||||||||||||| |||||||||    
T  15762644 gtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatactccaagttttttcattatacactagtgttccaaca 15762556  T

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Target: chr3; HSP #6
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 15767805 - 15767717
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagtttttccattatacactagagttccaaca 89  Q
    |||||||||||||| ||||||||| ||||||||||||||||   |||| |||||||||||||||| ||||||||||||| |||||||||    
T  15767805 gtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatactccaagttttttcattatacactagtgttccaaca 15767717  T

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Target: chr3; HSP #7
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 17358628 - 17358716
Alignment:
Q  2 tttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaag-tttttccattatacactagagttccaaca 89  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||| ||||||||||||| ||||| |||| ||||    
T  17358628 tttctccatccttgtgtttacattccaaaggctccacaaaccaactagtataatccaagttttttccattatatactagtgttctaaca 17358716  T

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Target: chr3; HSP #8
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 30338184 - 30338096
Alignment:
Q  2 tttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagttttt-ccattatacactagagttccaaca 89  Q
    |||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||| ||| |||||||||  |||||||||    
T  30338184 tttctccatccttgtgtttacattccaaaggctccacataacaactagtatactccaagtttttgccaatatacactactgttccaaca 30338096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 54271374 - 54271463
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagttttt-ccattatacactagagttccaaca 89  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||| |||||| ||||||||| ||| |||| ||||| |||||||||    
T  54271374 gtttctccatccttgtgtttacattccaaaggctccacataacaactagtatacttcaagtttttgccaatataaactagtgttccaaca 54271463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 20090276 - 20090187
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagt-ttttccattatacactagagttccaaca 89  Q
    |||||||||||||  ||||||||| ||||||||||||||||   |||| |||||||||||| |||| ||||||||||||| |||||||||    
T  20090276 gtttctccatcctgatgtttacatgccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttccaaca 20090187  T

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Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 20095401 - 20095312
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagt-ttttccattatacactagagttccaaca 89  Q
    |||||||||||||  ||||||||| ||||||||||||||||   |||| |||||||||||| |||| ||||||||||||| |||||||||    
T  20095401 gtttctccatcctgatgtttacatgccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttccaaca 20095312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 55129218 - 55129304
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaag---tttttccattatacactagagttcc 85  Q
    ||||||||||| |||||||||||||||||||||||||||||   |||| |||||||||||   ||||||||||||||||||| |||||    
T  55129218 gtttctccatc-ttgtgtttacattccaaaggctccacaaactcactagtatactccaagttttttttccattatacactagtgttcc 55129304  T

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Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 3476277 - 3476186
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagttttt-ccattatacactagagttccaacata 91  Q
    |||||| |||| |||||||||||||||||   |||| || | |||||| |||||||||||||||| ||| |||||||||| |||||||||||    
T  3476277 gtttctacatcattgtgtttacattccaatttctcctcataacaactagtatactccaagtttttgccaatatacactagtgttccaacata 3476186  T

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Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 4117035 - 4116946
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagttttt-ccattatacactagagttccaaca 89  Q
    |||||| |||| ||||||||||||||||| |  ||| || | |||||| |||||||||||||||| ||| |||||||||| |||||||||    
T  4117035 gtttcttcatcattgtgtttacattccaatgtttcctcataacaactagtatactccaagtttttgccaatatacactagtgttccaaca 4116946  T

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Target: chr8 (Bit Score: 70; Significance: 7e-32; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 7e-32
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 32016181 - 32016270
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagtttttccattatacactagagttccaacat 90  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||| |||||||||| ||||||||||    
T  32016181 gtttctccatccttgtgtttacattccaaaggctccacaaattcactagtatactccaagtttttccaatatacactagtgttccaacat 32016270  T

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Target: chr8; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 17955219 - 17955128
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagt-ttttccattatacactagagttccaacata 91  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||| |||||||||||||||||| |||||||||||    
T  17955219 gtttctccatccttgtgtttacattccaaaggctccacaaaacaactagtatactctaagtcttttccattatacactagtgttccaacata 17955128  T

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Target: chr8; HSP #3
Raw Score: 65; E-Value: 7e-29
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 32011007 - 32011095
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagtttttccattatacactagagttccaaca 89  Q
    |||||||||||||||||||||||||||||||||||||||||   |||| ||||||||||||||||||| |||||||||| |||||||||    
T  32011007 gtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagtttttccaatatacactagtgttccaaca 32011095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 43998631 - 43998542
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagt-ttttccattatacactagagttccaaca 89  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||| |||| ||||||||||||| |||||||||    
T  43998631 gtttctccatccttgtgtttacatttcaaaggctccacaaaccaactagtatactccaagtttttttcattatacactagtgttccaaca 43998542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 42513932 - 42513844
Alignment:
Q  2 tttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagttttt-ccattatacactagagttccaaca 89  Q
    ||||| |||||||||||||||||||||| | ||||||| | |||||| |||||||||||||||| ||| |||||||||| |||||||||    
T  42513932 tttctacatccttgtgtttacattccaatgtctccacataacaactagtatactccaagtttttgccaatatacactagtgttccaaca 42513844  T

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Target: chr8; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 24885386 - 24885465
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagttttt-ccattatacactag 79  Q
    |||||| |||||||||||||||||||||||| ||||||| | |||||| |||||||||||||||| ||| ||||||||||    
T  24885386 gtttctacatccttgtgtttacattccaaagtctccacataacaactagtatactccaagtttttgccaatatacactag 24885465  T

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Target: chr8; HSP #7
Raw Score: 43; E-Value: 9e-16
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 2165480 - 2165390
Alignment:
Q  1 gtttctccatccttgtgtttacatt-ccaaaggctccacaaatcaactaatatactcc-aagtttttccattatacactagagttccaaca 89  Q
    ||||||||||||||||||||||||| |||||| |||||||||   |||| |||||||| || ||||| ||||||||||||| |||||||||    
T  2165480 gtttctccatccttgtgtttacattcccaaagactccacaaactcactagtatactccaaaattttttcattatacactagtgttccaaca 2165390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 21641205 - 21641123
Alignment:
Q  8 catccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagttttt-ccattatacactagagttccaaca 89  Q
    ||||||||| |||||||||||| | || |||| | |||||| |||||| ||||||||| ||| |||||||||| |||||||||    
T  21641205 catccttgtatttacattccaatgtctgcacataacaactagtatacttcaagtttttgccaatatacactagtgttccaaca 21641123  T

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Target: chr7 (Bit Score: 70; Significance: 7e-32; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 7e-32
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 21080406 - 21080317
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagt-ttttccattatacactagagttccaaca 89  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||| |||||||||    
T  21080406 gtttctccatccttgtgtttacattccaaaggctccacaaaccaactagtatactccaagttttttccattatacactagtgttccaaca 21080317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 7e-29
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 47999456 - 47999544
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagtttttccattatacactagagttccaaca 89  Q
    |||||||||||||| ||||||||||||||||||||||||||   |||||||||||||||||||||||| |||||||||| |||||||||    
T  47999456 gtttctccatccttatgtttacattccaaaggctccacaaactcactaatatactccaagtttttccaatatacactagtgttccaaca 47999544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 2234037 - 2233947
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagt-ttttccattatacactagagttccaacat 90  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||| |||||||||| ||||||||||    
T  2234037 gtttcttcatccttgtgtttacattccaaaggctccacaaaccaactagtatactccaagttttttccaatatacactagggttccaacat 2233947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 47994281 - 47994369
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagtttttccattatacactagagttccaaca 89  Q
    |||||||||||||||||||||||||||||||||||||||||   |||| |||||||||||||||| || |||||||||| |||||||||    
T  47994281 gtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagttttttcaatatacactagtgttccaaca 47994369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 33238483 - 33238572
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaag-tttttccattatacactagagttccaaca 89  Q
    |||||||||||||||||||||||||||||||||||||||||   |||| ||||||||||| ||||| ||||||||||||| |||||||||    
T  33238483 gtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttccaaca 33238572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 32212050 - 32211961
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagttttt-ccattatacactagagttccaaca 89  Q
    ||||||||||||||||||||||||||||||| ||| ||| | |||||| |||||||||||||||| ||| |||||||||| |||||||||    
T  32212050 gtttctccatccttgtgtttacattccaaagtctcaacataacaactagtatactccaagtttttgccaatatacactagtgttccaaca 32211961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 33243660 - 33243749
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaag-tttttccattatacactagagttccaaca 89  Q
    |||||||||||||||||||||||| ||||||||||||||||   |||| ||||||||||| ||||| ||||||||||||| |||||||||    
T  33243660 gtttctccatccttgtgtttacatgccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttccaaca 33243749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 19308961 - 19308870
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagttttt-ccattatacactagagttccaacata 91  Q
    |||||| |||||||||||||||||| ||||| ||||||| | |||||| |||||||||||||||| ||| |||||||||| |||||||||||    
T  19308961 gtttctacatccttgtgtttacatttcaaagtctccacataacaactagtatactccaagtttttgccaatatacactagtgttccaacata 19308870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 12935146 - 12935235
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagttttt-ccattatacactagagttccaaca 89  Q
    |||||| |||||||||||||||||| ||||| ||||||| | |||||| |||||||||||||||| ||| |||||||||| |||||||||    
T  12935146 gtttctacatccttgtgtttacatttcaaagtctccacataacaactagtatactccaagtttttgccaatatacactagtgttccaaca 12935235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 42572662 - 42572751
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagttttt-ccattatacactagagttccaaca 89  Q
    |||||| |||||||||||||||||| ||||| ||||||| | |||||| |||||||||||||||| ||| |||||||||| |||||||||    
T  42572662 gtttctacatccttgtgtttacatttcaaagtctccacataacaactagtatactccaagtttttgccaatatacactagtgttccaaca 42572751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 47544828 - 47544745
Alignment:
Q  7 ccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaag-tttttccattatacactagagttccaaca 89  Q
    |||||||||||||||||||||||||||||||||||    ||| ||||||||||| ||||| ||||||||||||| |||||||||    
T  47544828 ccatccttgtgtttacattccaaaggctccacaaactctctagtatactccaagtttttttcattatacactagtgttccaaca 47544745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 17496162 - 17496251
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagttttt-ccattatacactagagttccaaca 89  Q
    |||||| |||||||||||||||||| ||||| ||||||| | |||||| |||||||||||||||| ||| |||| ||||| |||||||||    
T  17496162 gtttctacatccttgtgtttacatttcaaagtctccacataacaactagtatactccaagtttttgccaatatatactagtgttccaaca 17496251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 17557052 - 17556963
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagttttt-ccattatacactagagttccaaca 89  Q
    |||||| |||||||||||||||||| ||||| ||||||| | |||||| |||||||||||||||| ||| |||| ||||| |||||||||    
T  17557052 gtttctacatccttgtgtttacatttcaaagtctccacataacaactagtatactccaagtttttgccaatatatactagtgttccaaca 17556963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 43893604 - 43893693
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagttttt-ccattatacactagagttccaaca 89  Q
    |||||| |||| ||||||||||||||||| | |||| || | |||||| |||||||||||||||| ||| |||||||||| |||||||||    
T  43893604 gtttctacatcattgtgtttacattccaatgtctcctcataacaactagtatactccaagtttttgccaatatacactagtgttccaaca 43893693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 47176581 - 47176492
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagttttt-ccattatacactagagttccaaca 89  Q
    |||||| |||| ||||||||||||||||| | |||| || | |||||| |||||||||||||||| ||| |||||||||| |||||||||    
T  47176581 gtttctacatcattgtgtttacattccaatgtctcctcataacaactagtatactccaagtttttgccaatatacactagtgttccaaca 47176492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 16538758 - 16538694
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagttttt 65  Q
    |||||| ||||||||||| |||||||||||| ||||||| | |||||| ||||||||||||||||    
T  16538758 gtttctacatccttgtgtctacattccaaagtctccacataacaactagtatactccaagttttt 16538694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 16626904 - 16626968
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagttttt 65  Q
    |||||| ||||||||||| |||||||||||| ||||||| | |||||| ||||||||||||||||    
T  16626904 gtttctacatccttgtgtctacattccaaagtctccacataacaactagtatactccaagttttt 16626968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 7e-32; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 7e-32
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 5725427 - 5725516
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaag-tttttccattatacactagagttccaaca 89  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||| |||||||||    
T  5725427 gtttctccatccttgtgtttacattccaaaggctccacaaaccaactagtatactccaagttttttccattatacactagtgttccaaca 5725516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 3585363 - 3585452
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaag-tttttccattatacactagagttccaaca 89  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||| |||||||||| |||||||||    
T  3585363 gtttctccatccttgtgtttacattccaaaggctccacaaaccaactagtatactccaagttttttccaatatacactagtgttccaaca 3585452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 7e-29
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 34317899 - 34317811
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagtttttccattatacactagagttccaaca 89  Q
    |||||||||||||||||||||||||||||||||||||||||   |||| ||||||||||||||||||| |||||||||| |||||||||    
T  34317899 gtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagtttttccaatatacactagtgttccaaca 34317811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 7e-29
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 36684329 - 36684241
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagtttttccattatacactagagttccaaca 89  Q
    |||||||||||||||||||||||||||||||||||||||||   |||| ||||||||||||||||||| |||||||||| |||||||||    
T  36684329 gtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagtttttccaatatacactagtgttccaaca 36684241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 90 - 164
Target Start/End: Original strand, 47779611 - 47779684
Alignment:
Q  90 taagttatccataatgggaagaaccaaaaaattaattaccctaagctagtggccaagaaaatgaatttttgatgt 164  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||    
T  47779611 taagttatccataatgggaagaaccgaaaaatta-ttaccctaagctagtggccaagaaaatggatttttgatgt 47779684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 27711751 - 27711840
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaag-tttttccattatacactagagttccaaca 89  Q
    |||||||||||||||||||||||||||||||||||||||||   |||| ||||||||||| ||||| ||||||||||||| |||||||||    
T  27711751 gtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttccaaca 27711840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 37404085 - 37403995
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagt--ttttccattatacactagagttccaaca 89  Q
    |||||||||||||||||||||||||||||||||||||||||   |||| ||||||||||||  |||| ||||||||||||| |||||||||    
T  37404085 gtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagttttttttcattatacactagtgttccaaca 37403995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 37409204 - 37409114
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagt--ttttccattatacactagagttccaaca 89  Q
    |||||||||||||||||||||||||||||||||||||||||   |||| ||||||||||||  |||| ||||||||||||| |||||||||    
T  37409204 gtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagttttttttcattatacactagtgttccaaca 37409114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 50959069 - 50958977
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagtttt---tccattatacactagagttccaacat 90  Q
    |||||||||| ||||||||||||||||||||||||||||||   |||| |||||||||||||||   ||||||||||||||| ||||||||||    
T  50959069 gtttctccattcttgtgtttacattccaaaggctccacaaactcactagtatactccaagtttttcctccattatacactagtgttccaacat 50958977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 5730833 - 5730922
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactcc-aagtttttccattatacactagagttccaaca 89  Q
    |||||||||||||||||||||||||||||||| | |||||| |||||| |||||||| || ||||||||||||||||||| |||| ||||    
T  5730833 gtttctccatccttgtgtttacattccaaaggtttcacaaaccaactagtatactccaaattttttccattatacactagtgttctaaca 5730922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 11250790 - 11250701
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaag--tttttccattatacactagagttccaac 88  Q
    ||||||||||||||||||||||||||||||| |||||||||   |||  |||||||||||  ||||||||||||||||||| ||||||||    
T  11250790 gtttctccatccttgtgtttacattccaaagactccacaaactcactggtatactccaagtttttttccattatacactagtgttccaac 11250701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 27716871 - 27716962
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaag---tttttccattatacactagagttccaaca 89  Q
    ||||||||||||||||| |||| ||||||||||||||||||   |||| |||||||||||   ||||||||||||||||||| |||||||||    
T  27716871 gtttctccatccttgtgcttacgttccaaaggctccacaaactcactagtatactccaagttttttttccattatacactagtgttccaaca 27716962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 48246057 - 48245966
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagttttt-ccattatacactagagttccaacata 91  Q
    |||||| |||||||||||||||||||||||| ||||||| | |||||| |||||||||||||||| ||| | |||||||  |||||||||||    
T  48246057 gtttctacatccttgtgtttacattccaaagtctccacataacaactagtatactccaagtttttgccaatgtacactattgttccaacata 48245966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 9e-16
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 47786600 - 47786657
Alignment:
Q  100 ataatgggaagaaccaaaaaattaattaccctaagctagtggccaagaaaatgaatttt 158  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||    
T  47786600 ataatgggaagagccaaaaaatta-ttaccctaagctagtggccaagaaaatggatttt 47786657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 2e-29; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 4162980 - 4162891
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagt-ttttccattatacactagagttccaaca 89  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||| || |||||||||    
T  4162980 gtttctccatccttgtgtttacattccaaaggctccacaaaccaactagtatactccaagttttttccattatacaccagtgttccaaca 4162891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 42728234 - 42728146
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagtttttccattatacactagagttccaaca 89  Q
    |||||||||||||||||||||||||||||||||||||||||   |||| || |||||||||||||||| |||||||||| |||||||||    
T  42728234 gtttctccatccttgtgtttacattccaaaggctccacaaactcactagtaaactccaagtttttccaatatacactagtgttccaaca 42728146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 7e-26
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 28751106 - 28751019
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagttttt-ccattatacactagagttccaa 87  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||| ||| |||||||||| |||||||    
T  28751106 gtttctccatccttgtgtttacattccaaaggctccacataacaactagtatactccaagtttttgccaatatacactagtgttccaa 28751019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 42723065 - 42722975
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagtttttccattatacactagagttccaacata 91  Q
    |||||||||||||||||||||||||||||||||||||||||   |||| || ||||||| |||||||| |||||||||| |||||||||||    
T  42723065 gtttctccatccttgtgtttacattccaaaggctccacaaactcactagtaaactccaaatttttccaatatacactagtgttccaacata 42722975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 44754220 - 44754130
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagtttttccattatacactagagttccaacata 91  Q
    |||||||||||||| ||||||||| ||||||||||||||||   |||| |||||||||||||||| ||||||||||||| |||||||||||    
T  44754220 gtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatactccaagttttttcattatacactagtgttccaacata 44754130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 44096783 - 44096871
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagtttttccattatacactagagttccaaca 89  Q
    |||||||||||||| ||||||||||||||| ||||||||||   |||| |||||||||||||||| ||||||||||||| |||||||||    
T  44096783 gtttctccatccttttgtttacattccaaatgctccacaaactcactagtatactccaagttttttcattatacactagtgttccaaca 44096871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 44759385 - 44759298
Alignment:
Q  2 tttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagtttttccattatacactagagttccaaca 89  Q
    ||||||||||||| ||||||||| ||||||||||||||||   |||| |||||||||||||||| ||||||||||||| |||||||||    
T  44759385 tttctccatccttatgtttacatgccaaaggctccacaaactcactagtatactccaagttttttcattatacactagtgttccaaca 44759298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 40518134 - 40518043
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagtttt---tccattatacactagagttccaaca 89  Q
    ||||||||||||||||||||| |||||||||||||||||||   |||| |||||||||||||||   ||||||||||||||| |||||||||    
T  40518134 gtttctccatccttgtgtttatattccaaaggctccacaaactcactattatactccaagtttttcctccattatacactagtgttccaaca 40518043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 40392747 - 40392837
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaag-tttttccattatacactagagttccaacat 90  Q
    |||||||||||||| |||||||||| |||||||||||||||   |||| ||||||||||| ||||| ||||||||||||| ||||||||||    
T  40392747 gtttctccatccttatgtttacattgcaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttccaacat 40392837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 40520066 - 40520158
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatact-ccaagtttt---tccattatacactagagttccaaca 89  Q
    |||||||||||||||||||||||||||||||||||||||||   |||| |||||| |||||||||   ||||||||||||||| |||||||||    
T  40520066 gtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactcccaagtttttcctccattatacactagtgttccaaca 40520158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055 (Bit Score: 65; Significance: 7e-29; HSPs: 1)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 65; E-Value: 7e-29
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 3505 - 3593
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagtttttccattatacactagagttccaaca 89  Q
    |||||||||||||||||||||||||||||||||||||||||   |||| ||||||||||||||||||| |||||||||| |||||||||    
T  3505 gtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagtttttccaatatacactagtgttccaaca 3593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052 (Bit Score: 65; Significance: 7e-29; HSPs: 1)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 65; E-Value: 7e-29
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 81030 - 80942
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagtttttccattatacactagagttccaaca 89  Q
    |||||||||||||||||||||||||||||||||||||||||   |||| ||||||||||||||||||| |||||||||| |||||||||    
T  81030 gtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagtttttccaatatacactagtgttccaaca 80942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 62; Significance: 4e-27; HSPs: 1)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 8619 - 8530
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagttttt-ccattatacactagagttccaaca 89  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||| ||| |||||||||| |||||||||    
T  8619 gtttctccatccttgtgtttacattccaaaggctccacataacaactagtatactccaagtttttgccaatatacactagtgttccaaca 8530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 4e-27; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 2817486 - 2817397
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagttttt-ccattatacactagagttccaaca 89  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||| ||| |||||||||| |||||||||    
T  2817486 gtttctccatccttgtgtttacattccaaaggctccacataacaactagtatactccaagtttttgccaatatacactagtgttccaaca 2817397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 21402169 - 21402258
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaag-tttttccattatacactagagttccaaca 89  Q
    |||||||||||||||||||||||||||||||||||||||||   |||| ||||||||||| ||||| ||||||||||||| |||||||||    
T  21402169 gtttctccatccttgtgtttacattccaaaggctccacaaactcactactatactccaagtttttttcattatacactagtgttccaaca 21402258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 22697857 - 22697768
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagt-ttttccattatacactagagttccaaca 89  Q
    |||||||||||||||||||||||||||||||||||||||||   |||| |||||||||||| |||| ||||||||||||| |||||||||    
T  22697857 gtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttccaaca 22697768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 22703033 - 22702944
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagt-ttttccattatacactagagttccaaca 89  Q
    |||||||||||||||||||||||||||||||||||||||||   |||| |||||||||||| |||| ||||||||||||| |||||||||    
T  22703033 gtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttccaaca 22702944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 29490897 - 29490808
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagt-ttttccattatacactagagttccaaca 89  Q
    |||||||||||||||||||||||||||||| ||||||||||   |||| |||||||||||| |||| ||||||||||||| |||||||||    
T  29490897 gtttctccatccttgtgtttacattccaaaagctccacaaactcactagtatactccaagtttttttcattatacactagtgttccaaca 29490808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 34142843 - 34142932
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagttttt-ccattatacactagagttccaaca 89  Q
    |||||| |||||||||||||||||||||||| ||||||| | |||||| |||||||||||||||| ||| |||||||||| |||||||||    
T  34142843 gtttctacatccttgtgtttacattccaaagtctccacataacaactagtatactccaagtttttgccaatatacactagtgttccaaca 34142932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 34155459 - 34155548
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagttttt-ccattatacactagagttccaaca 89  Q
    |||||| |||||||||||||||||||||||| ||||||| | |||||| |||||||||||||||| ||| |||||||||| |||||||||    
T  34155459 gtttctacatccttgtgtttacattccaaagtctccacataacaactagtatactccaagtttttgccaatatacactagtgttccaaca 34155548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 6727862 - 6727773
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagttttt-ccattatacactagagttccaaca 89  Q
    |||||| |||| ||||||||||||||||| | |||| || | |||||| |||||||||||||||| ||| |||||||||| |||||||||    
T  6727862 gtttctacatcattgtgtttacattccaatgtctcctcataacaactagtatactccaagtttttgccaatatacactagtgttccaaca 6727773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 24190739 - 24190650
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagttttt-ccattatacactagagttccaaca 89  Q
    |||||| |||| ||||||||||||||||| | |||| || | |||||| |||||||||||||||| ||| |||||||||| |||||||||    
T  24190739 gtttctacatcattgtgtttacattccaatgtctcctcataacaactagtatactccaagtttttgccaatatacactagtgttccaaca 24190650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 34376526 - 34376615
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagttttt-ccattatacactagagttccaaca 89  Q
    |||||| |||| ||||||||||||||||| | |||| || | |||||| |||||||||||||||| ||| |||||||||| |||||||||    
T  34376526 gtttctacatcattgtgtttacattccaatgtctcctcataacaactagtatactccaagtttttgccaatatacactagtgttccaaca 34376615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 31983538 - 31983629
Alignment:
Q  2 tttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagttttt-ccattatacactagagttccaacataa 92  Q
    ||||| |||| ||||||||||||||||| | |||| || |  ||||| |||||||||||||||| ||| |||||||||| ||||||||||||    
T  31983538 tttctacatcattgtgtttacattccaatgtctcctcataaaaactagtatactccaagtttttgccaatatacactagtgttccaacataa 31983629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 32026 - 32114
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagtttttccattatacactagagttccaaca 89  Q
    |||||||||||||||||||||||||||||||||||||||||   |||| ||||||||||||||||||| |||||| ||| |||||||||    
T  32026 gtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagtttttccaatatacaatagtgttccaaca 32114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 26854 - 26942
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagtttttccattatacactagagttccaaca 89  Q
    |||||||||||||| ||||||||||||||||||||||||||   |||| ||||||||||||||||||| |||||||||| |||| ||||    
T  26854 gtttctccatccttttgtttacattccaaaggctccacaaactcactagtatactccaagtttttccaatatacactagtgttcgaaca 26942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 36354623 - 36354710
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagtttttccattatacactagagttccaaca 89  Q
    ||||||||||||||||||| ||||||||||||||||||||||  |||| |||||||||||||||| ||||||||||||| |||||||||    
T  36354623 gtttctccatccttgtgttaacattccaaaggctccacaaattcactagtatactccaagttttt-cattatacactagtgttccaaca 36354710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 8979952 - 8979863
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagt-ttttccattatacactagagttccaaca 89  Q
    |||||||||||||||||||||||||||||||||||||||||   |||| |||||||||||| |||| ||||||||||||| |||||||||    
T  8979952 gtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttccaaca 8979863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 8985072 - 8984983
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagt-ttttccattatacactagagttccaaca 89  Q
    |||||||||||||||||||||||||||||||||||||||||   |||| |||||||||||| |||| ||||||||||||| |||||||||    
T  8985072 gtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttccaaca 8984983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 13700938 - 13701027
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaag-tttttccattatacactagagttccaaca 89  Q
    |||||||||||||||||||||||||||||||||||||||||   |||| ||||||||||| ||||| ||||||||||||| |||||||||    
T  13700938 gtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttccaaca 13701027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 21304620 - 21304531
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagt-ttttccattatacactagagttccaaca 89  Q
    |||||||||||||||||||||||||||||||||||||||||   |||| |||||||||||| |||| ||||||||||||| |||||||||    
T  21304620 gtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttccaaca 21304531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 53798391 - 53798480
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaag-tttttccattatacactagagttccaaca 89  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||| |||||||||  |||||||||    
T  53798391 gtttctccattcttgtgtttacattccaaaggctccacaaaccaactagtatactccaagttttttccaatatacactaatgttccaaca 53798480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 54991904 - 54991993
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaag-tttttccattatacactagagttccaaca 89  Q
    |||||||||||||||||||||||||||||||||||||||||   |||| ||||||||||| ||||| ||||||||||||| |||||||||    
T  54991904 gtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttccaaca 54991993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 39999550 - 39999638
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagtttttccattatacactagagttccaaca 89  Q
    |||||||||||||| ||||||||| ||||||||||||||||   |||| |||||||||||||||| ||||||||||||| |||||||||    
T  39999550 gtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatactccaagttttttcattatacactagtgttccaaca 39999638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 40004508 - 40004596
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagtttttccattatacactagagttccaaca 89  Q
    |||||||||||||| ||||||||| ||||||||||||||||   |||| |||||||||||||||| ||||||||||||| |||||||||    
T  40004508 gtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatactccaagttttttcattatacactagtgttccaaca 40004596  T

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Target: chr4; HSP #10
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 54343684 - 54343772
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagtttttccattatacactagagttccaaca 89  Q
    |||||||||||||| ||||||||| ||||||||||||||||   |||| |||||||||||||||| ||||||||||||| |||||||||    
T  54343684 gtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatactccaagttttttcattatacactagtgttccaaca 54343772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 54348838 - 54348926
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagtttttccattatacactagagttccaaca 89  Q
    |||||||||||||| ||||||||| ||||||||||||||||   |||| |||||||||||||||| ||||||||||||| |||||||||    
T  54348838 gtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatactccaagttttttcattatacactagtgttccaaca 54348926  T

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Target: chr4; HSP #12
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 21299500 - 21299411
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagt-ttttccattatacactagagttccaaca 89  Q
    |||||| ||||||||||||||||||||||||||||||||||   |||| |||||||||||| |||| ||||||||||||| |||||||||    
T  21299500 gtttcttcatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttccaaca 21299411  T

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Target: chr4; HSP #13
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 41393920 - 41394009
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagttttt-ccattatacactagagttccaaca 89  Q
    |||| ||||||||||||||||||||||||||||| |||| | |||||| |||||||||||||||| ||| |||||||||| |||||||||    
T  41393920 gtttttccatccttgtgtttacattccaaaggcttcacataacaactagtatactccaagtttttgccaatatacactagtgttccaaca 41394009  T

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Target: chr4; HSP #14
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 54990477 - 54990386
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagt-ttttccattatacactagagttccaacata 91  Q
    ||||||||||||||||||| |||||||||||||||||||||   |||| |||||||||||| |||| ||||||||| ||| |||||||||||    
T  54990477 gtttctccatccttgtgttaacattccaaaggctccacaaactcactagtatactccaagtttttttcattatacattagtgttccaacata 54990386  T

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Target: chr4; HSP #15
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 9763358 - 9763269
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagttt-ttccattatacactagagttccaaca 89  Q
    |||||| |||||||||||||||||||||||| ||||||| | |||||| |||||||||||||| | ||| |||||||||| |||||||||    
T  9763358 gtttctacatccttgtgtttacattccaaagtctccacataacaactagtatactccaagtttatgccaatatacactagtgttccaaca 9763269  T

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Target: chr4; HSP #16
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 36359809 - 36359896
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagtttttccattatacactagagttccaaca 89  Q
    ||||||||||||||||||| ||||| |||||||||||||||   |||| |||||||||||||||| ||||||||| ||| |||||||||    
T  36359809 gtttctccatccttgtgttaacatttcaaaggctccacaaactcactagtatactccaagttttt-cattatacagtagtgttccaaca 36359896  T

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Target: chr4; HSP #17
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 51018791 - 51018700
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagttttt-ccattatacactagagttccaacata 91  Q
    |||||| ||||||||||| |||||||||||| ||||||| | |||||| |||| ||||||||||| ||| |||||||||| ||| |||||||    
T  51018791 gtttctacatccttgtgtgtacattccaaagtctccacataacaactagtatattccaagtttttgccaatatacactagtgtttcaacata 51018700  T

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Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 13695819 - 13695908
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagttttt-ccattatacactagagttccaaca 89  Q
    |||||| |||| ||||||||||||||||| | |||| || | |||||| |||||||||||||||| ||| |||||||||| |||||||||    
T  13695819 gtttctacatcattgtgtttacattccaatgtctcctcataacaactagtatactccaagtttttgccaatatacactagtgttccaaca 13695908  T

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Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 13711432 - 13711521
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagttttt-ccattatacactagagttccaaca 89  Q
    |||||| |||| ||||||||||||||||| | |||| || | |||||| |||||||||||||||| ||| |||||||||| |||||||||    
T  13711432 gtttctacatcattgtgtttacattccaatgtctcctcataacaactagtatactccaagtttttgccaatatacactagtgttccaaca 13711521  T

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Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 4207104 - 4207192
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagttttt-ccattatacactagagttccaaca 89  Q
    |||||| |||| ||||||| ||||||||| | |||| || | |||||| |||||||||||||||| ||| |||||||||| |||||||||    
T  4207104 gtttctacatcattgtgtt-acattccaatgtctcctcataacaactagtatactccaagtttttgccaatatacactagtgttccaaca 4207192  T

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Target: chr5 (Bit Score: 58; Significance: 1e-24; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 17510486 - 17510575
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaag-tttttccattatacactagagttccaaca 89  Q
    |||||||||||||||||||||||||||||||||||||||||   |||| ||||||||||| ||||| ||||||||||||| |||||||||    
T  17510486 gtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttccaaca 17510575  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 42020001 - 42020090
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaag-tttttccattatacactagagttccaaca 89  Q
    |||||||||||||||||||||||||||||||||||||||||   |||| ||||||||||| ||||| ||||||||||||| |||||||||    
T  42020001 gtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttccaaca 42020090  T

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Target: chr5; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 43580088 - 43580179
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagtttt---tccattatacactagagttccaaca 89  Q
    |||||||||||||||||||||||||||||||||||||||||   |||| |||||||||||||||   ||||||||||||||| |||||||||    
T  43580088 gtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagtttttcctccattatacactagtgttccaaca 43580179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 6 - 89
Target Start/End: Original strand, 41859017 - 41859102
Alignment:
Q  6 tccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaag--tttttccattatacactagagttccaaca 89  Q
    ||||||||||||||||||||||||||||||||||||   |||| |||||||||||  ||||||||||||||||||| |||||||||    
T  41859017 tccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagtttttttccattatacactagtgttccaaca 41859102  T

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Target: chr5; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 41853897 - 41853988
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaag---tttttccattatacactagagttccaaca 89  Q
    |||||||||||||||||||||||||||||||||||||||||    ||| |||||||||||   ||||||||||||||||||| |||||||||    
T  41853897 gtttctccatccttgtgtttacattccaaaggctccacaaactccctagtatactccaagttttttttccattatacactagtgttccaaca 41853988  T

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Target: chr5; HSP #6
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 26709750 - 26709841
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatac-tccaagtttttccattatacactagagttccaacata 91  Q
    |||||||||| ||||||||||||||||| |||||||||||| |||||| ||||| || || ||||||||||||||||||  |||||||||||    
T  26709750 gtttctccattcttgtgtttacattccataggctccacaaaccaactagtatacttcaaattttttccattatacactaatgttccaacata 26709841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 26979484 - 26979575
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatac-tccaagtttttccattatacactagagttccaacata 91  Q
    |||||||||| ||||||||||||||||| |||||||||||| |||||| ||||| || || ||||||||||||||||||  |||||||||||    
T  26979484 gtttctccattcttgtgtttacattccataggctccacaaaccaactagtatacttcaaattttttccattatacactaatgttccaacata 26979575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 42024781 - 42024871
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaag-tttttccattatacactagagttccaacat 90  Q
    |||||||||||||| ||||||||||||||||||||||||||   |||| |||||| |||| ||||| ||||||||||||| ||||||||||    
T  42024781 gtttctccatccttatgtttacattccaaaggctccacaaactcactagtatacttcaagtttttttcattatacactagtgttccaacat 42024871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 17505381 - 17505472
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaag---tttttccattatacactagagttccaaca 89  Q
    |||| ||||||||||||||||||||||||||||||||||||   |||| |||| ||||||   ||||||||||||||||||| |||||||||    
T  17505381 gtttttccatccttgtgtttacattccaaaggctccacaaactcactagtatattccaagttttttttccattatacactagtgttccaaca 17505472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 1413158 - 1413068
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagttttt--ccattatacactagagttccaaca 89  Q
    |||||| |||||||||||||||||||||||||||||||| | |||||| |||||||||| |||||  ||| ||||||| || |||||||||    
T  1413158 gtttcttcatccttgtgtttacattccaaaggctccacataacaactagtatactccaaatttttgcccaatatacaccagggttccaaca 1413068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 36254579 - 36254668
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagttttt-ccattatacactagagttccaaca 89  Q
    |||||| |||||||||||||||||||||| | ||||||| | |||||| |||||||||||||||| ||| |||||||||| ||| |||||    
T  36254579 gtttctacatccttgtgtttacattccaatgtctccacataacaactagtatactccaagtttttgccaatatacactagtgtttcaaca 36254668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 24770690 - 24770601
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagttttt-ccattatacactagagttccaaca 89  Q
    |||||| |||| ||||||||||||||||| | |||| || | |||||| |||||||||||||||| ||| |||||||||| |||||||||    
T  24770690 gtttctacatcattgtgtttacattccaatgtctcctcataacaactagtatactccaagtttttgccaatatacactagtgttccaaca 24770601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 24776144 - 24776055
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagttttt-ccattatacactagagttccaaca 89  Q
    |||||| |||| ||||||||||||||||| | |||| || | |||||| ||||||| |||||||| ||| |||||||||| |||||||||    
T  24776144 gtttctacatcattgtgtttacattccaatgtctcctcataacaactagtatactcaaagtttttgccaatatacactagtgttccaaca 24776055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 3991 - 4081
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaag--tttttccattatacactagagttccaaca 89  Q
    |||||||||||||||||||||||||||||||||||||||||   |||| |||||||||||  ||||| ||||||||||||| |||||||||    
T  3991 gtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagttttttttcattatacactagtgttccaaca 4081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 42; Significance: 0.000000000000004; HSPs: 2)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 13071 - 12982
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagttttt-ccattatacactagagttccaaca 89  Q
    |||||| |||| ||||||||||||||||| | |||| || | |||||| |||||||||||||||| ||| |||||||||| |||||||||    
T  13071 gtttctacatcattgtgtttacattccaatgtctcctcataacaactagtatactccaagtttttgccaatatacactagtgttccaaca 12982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #2
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 18528 - 18439
Alignment:
Q  1 gtttctccatccttgtgtttacattccaaaggctccacaaatcaactaatatactccaagttttt-ccattatacactagagttccaaca 89  Q
    |||||| |||| ||||||||||||||||| | |||| || | |||||| ||||||| |||||||| ||| |||||||||| |||||||||    
T  18528 gtttctacatcattgtgtttacattccaatgtctcctcataacaactagtatactctaagtttttgccaatatacactagtgttccaaca 18439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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