View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4306-Insertion-38 (Length: 238)
Name: NF4306-Insertion-38
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4306-Insertion-38 |
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| [»] chr2 (1 HSPs) |
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| [»] chr6 (4 HSPs) |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 6 - 238
Target Start/End: Complemental strand, 41382310 - 41382078
Alignment:
| Q |
6 |
gcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaattgggccaacatgcgtttggtgaaaagttagggttgtggatt |
105 |
Q |
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| T |
41382310 |
gcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaattgggccaacatgcgtttggtgaaaagttagggttgtggatt |
41382211 |
T |
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| Q |
106 |
gtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccggaggtgcatcattgcaaaaatttcacaatacactgtgtccaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
41382210 |
gtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccggaggtgcatcattgcaaaaatttcacaatacagtttgtccaa |
41382111 |
T |
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| Q |
206 |
gttgcaaaccaatcaaattgaattttttcatta |
238 |
Q |
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| T |
41382110 |
gttgcaaaccaatcaaattgagctttttcatta |
41382078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 6 - 238
Target Start/End: Complemental strand, 7971911 - 7971679
Alignment:
| Q |
6 |
gcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaattgggccaacatgcgtttggtgaaaagttagggttgtggatt |
105 |
Q |
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| T |
7971911 |
gcaaatggttgagatgcatgagatggttccaggaaaacgtcttgatacatataatgaattagggcaacatgcttttggtgaaaagttagggttgtggatt |
7971812 |
T |
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| Q |
106 |
gtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccggaggtgcatcattgcaaaaatttcacaatacactgtgtccaa |
205 |
Q |
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| T |
7971811 |
gtgatgcctcaacaacttgtggtacaggtcgggtcggacattgtctacatggtcaccggaggtgcatcattgcaaaaatttcacaatacagtctgtccaa |
7971712 |
T |
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| Q |
206 |
gttgcaaaccaatcaaattgaattttttcatta |
238 |
Q |
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| T |
7971711 |
gttgcaaaccaatcaaattgagctttttcatta |
7971679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 6 - 238
Target Start/End: Original strand, 8041777 - 8042009
Alignment:
| Q |
6 |
gcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaattgggccaacatgcgtttggtgaaaagttagggttgtggatt |
105 |
Q |
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| T |
8041777 |
gcaaatggttgagatgcatgagatggttccaggaaaacgtcttgatacatataatgaattagggcaacatgcttttggtgaaaagttagggttgtggatt |
8041876 |
T |
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| Q |
106 |
gtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccggaggtgcatcattgcaaaaatttcacaatacactgtgtccaa |
205 |
Q |
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| T |
8041877 |
gtgatgcctcaacaacttgtggtacaggtcgggtcggacattgtctacatggtcaccggaggtgcatcattgcaaaaatttcacaatacagtctgtccaa |
8041976 |
T |
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| Q |
206 |
gttgcaaaccaatcaaattgaattttttcatta |
238 |
Q |
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| T |
8041977 |
gttgcaaaccaatcaaattgagctttttcatta |
8042009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 6 - 226
Target Start/End: Original strand, 8031898 - 8032118
Alignment:
| Q |
6 |
gcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaattgggccaacatgcgtttggtgaaaagttagggttgtggatt |
105 |
Q |
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||||||||||||||||||||| ||| |||||||||||||| |||||| ||| ||||||| || |||||||||||||| ||||||||||| | | ||| |
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| T |
8031898 |
gcaaatggttgagatgcatgaaatgattccgggaaaacgttttgatagataccatgaattaggtcaacatgcgtttggcgaaaagttaggcctttatatt |
8031997 |
T |
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| Q |
106 |
gtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccggaggtgcatcattgcaaaaatttcacaatacactgtgtccaa |
205 |
Q |
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| T |
8031998 |
gtggttcctcaacaacttatagtagaagttgggggcgacattgtctacatggtcaccggaggtgcatcattgcggaagttccacaatacagtgtgttcaa |
8032097 |
T |
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| Q |
206 |
gttgcaaaccaatcaaattga |
226 |
Q |
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| T |
8032098 |
gttgcaaaaatatcaaattga |
8032118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 6 - 182
Target Start/End: Complemental strand, 7979479 - 7979303
Alignment:
| Q |
6 |
gcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaattgggccaacatgcgtttggtgaaaagttagggttgtggatt |
105 |
Q |
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||||||||||||||||||||| ||||||||||||||||| |||||| ||| ||||||| || |||||||| ||||| |||| ||||| | | ||| |
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| T |
7979479 |
gcaaatggttgagatgcatgaaatggttccgggaaaacgctttgatagataccatgaattaggtcaacatgcttttgggaaaaaattaggtctttatatt |
7979380 |
T |
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| Q |
106 |
gtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccggaggtgcatcattgcaaaa |
182 |
Q |
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||| |||||||||||||||||||| || |||| || ||||||| || |||||||| || || ||||||||||||| |
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| T |
7979379 |
gtggtgcctcaacaacttgtggtagaaattggtgttaacattgtttatatggtcactgggggaacatcattgcaaaa |
7979303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 6 - 226
Target Start/End: Complemental strand, 3434 - 3214
Alignment:
| Q |
6 |
gcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaattgggccaacatgcgtttggtgaaaagttagggttgtggatt |
105 |
Q |
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||||||||||||||||||||| |||||||| ||||||||| |||||| || ||||| |||| ||||| |||||||| ||||||||||| | | ||| |
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| T |
3434 |
gcaaatggttgagatgcatgaaatggttcctggaaaacgttttgataggtaccatgaactgggacaacacgcgtttggcgaaaagttaggcctttatatt |
3335 |
T |
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| Q |
106 |
gtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccggaggtgcatcattgcaaaaatttcacaatacactgtgtccaa |
205 |
Q |
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||| |||||||||||||||| ||| ||||||||||| ||||||| |||||||||||||||||||||||| ||| ||| || ||||||||| ||||||||| |
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| T |
3334 |
gtggtgcctcaacaacttgtagtagaagttggggtgaacattgtttacatggtcaccggaggtgcatcactgcgaaagttccacaatacagtgtgtccaa |
3235 |
T |
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| Q |
206 |
gttgcaaaccaatcaaattga |
226 |
Q |
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|||||||| |||||||||| |
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| T |
3234 |
gttgcaaaaatatcaaattga |
3214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 167
Target Start/End: Complemental strand, 14198876 - 14198715
Alignment:
| Q |
6 |
gcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaattgggccaacatgcgtttggtgaaaagttagggttgtggatt |
105 |
Q |
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||||||||||||||||||||| ||||| || || |||||| | |||| |||| ||||| |||| ||| |||| |||||||||||||| || ||| ||| |
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| T |
14198876 |
gcaaatggttgagatgcatgaaatggtacccgggaaacgtttcgatagatatcatgaactgggtcaatatgcttttggtgaaaagttgggtctgtatatt |
14198777 |
T |
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| Q |
106 |
gtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccggagg |
167 |
Q |
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|| |||| ||||||||| | || |||| || || |||||||||||||||| |||||||| |
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| T |
14198776 |
gttgtgccacaacaacttattgttgaagtcggcgttaacattgtctacatggtaaccggagg |
14198715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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