View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4306-Insertion-42 (Length: 134)

Name: NF4306-Insertion-42
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4306-Insertion-42
NF4306-Insertion-42
[»] chr8 (2 HSPs)
chr8 (11-134)||(1846990-1847116)
chr8 (76-134)||(4620288-4620346)
[»] chr1 (8 HSPs)
chr1 (38-134)||(7890635-7890731)
chr1 (18-134)||(7888338-7888466)
chr1 (39-134)||(45993084-45993179)
chr1 (67-134)||(45983332-45983399)
chr1 (67-134)||(51292213-51292280)
chr1 (76-134)||(38137489-38137547)
chr1 (92-120)||(3301342-3301370)
chr1 (67-134)||(40034320-40034387)
[»] chr2 (3 HSPs)
chr2 (67-134)||(34691423-34691490)
chr2 (67-134)||(34713835-34713902)
chr2 (67-120)||(33861451-33861504)
[»] chr5 (1 HSPs)
chr5 (67-134)||(16352226-16352293)


Alignment Details
Target: chr8 (Bit Score: 113; Significance: 1e-57; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 1e-57
Query Start/End: Original strand, 11 - 134
Target Start/End: Complemental strand, 1847116 - 1846990
Alignment:
Q  11 actattatgtgttgaatttgcagattcattcaagttgaaggactgatgagtaggggaaagtttcctattaacattctgtttat---tggtcatgtcgact 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  1847116 actattatgtgttgaatttgcagattcattcaagttgaaggactgatgagtaggggaaagtttcctattaacattctgtttattggtggtcatgtcgact 1847017  T
Q  108 ccgggaagtcaacgacggctggtcatt 134  Q
    |||||||||||||||||||||||||||    
T  1847016 ccgggaagtcaacgacggctggtcatt 1846990  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 4620346 - 4620288
Alignment:
Q  76 tattaacattctgtttattggtcatgtcgactccgggaagtcaacgacggctggtcatt 134  Q
    |||||| ||| |||||||||||||||||||||| ||||||||||| || ||||||||||    
T  4620346 tattaatattgtgtttattggtcatgtcgactctgggaagtcaaccactgctggtcatt 4620288  T

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Target: chr1 (Bit Score: 77; Significance: 4e-36; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 4e-36
Query Start/End: Original strand, 38 - 134
Target Start/End: Original strand, 7890635 - 7890731
Alignment:
Q  38 attcaagttgaaggactgatgagtaggggaaagtttcctattaacattctgtttattggtcatgtcgactccgggaagtcaacgacggctggtcatt 134  Q
    ||||||||| ||||||  |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7890635 attcaagtttaaggaccaatgagtaggccaaagtttcctattaacattctgtttattggtcatgtcgactccgggaagtcaacgacggctggtcatt 7890731  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 7888338 - 7888466
Alignment:
Q  18 tgtgttgaatttgcagattcattcaagttgaaggactgatgagtaggggaaagt------------ttcctattaacattctgtttattggtcatgtcga 105  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||  |||||            ||||| ||||| ||||||||||||||||||| ||    
T  7888338 tgtgttgaatttgcagattcattcaagtttaaggactaatgagtaggccaaagtttccgcccccggttcctcttaactttctgtttattggtcatgttga 7888437  T
Q  106 ctccgggaagtcaacgacggctggtcatt 134  Q
     |||||||||||||| || ||||||||||    
T  7888438 ttccgggaagtcaaccactgctggtcatt 7888466  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 39 - 134
Target Start/End: Original strand, 45993084 - 45993179
Alignment:
Q  39 ttcaagttgaaggactgatgagtaggggaaagtttcctattaacattctgtttattggtcatgtcgactccgggaagtcaacgacggctggtcatt 134  Q
    |||||||| ||||||| |||  || || |||| ||||||||| |||| || ||||||||||||||||||||||||||||||| ||  |||||||||    
T  45993084 ttcaagtttaaggactaatggataaggaaaaggttcctattagcattgtggttattggtcatgtcgactccgggaagtcaaccactactggtcatt 45993179  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 45983332 - 45983399
Alignment:
Q  67 aaagtttcctattaacattctgtttattggtcatgtcgactccgggaagtcaacgacggctggtcatt 134  Q
    |||| ||| |||||||||| || ||||||||||||| ||||||||||||||||| ||  |||||||||    
T  45983332 aaaggttcgtattaacattgtggttattggtcatgtggactccgggaagtcaaccactactggtcatt 45983399  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 51292280 - 51292213
Alignment:
Q  67 aaagtttcctattaacattctgtttattggtcatgtcgactccgggaagtcaacgacggctggtcatt 134  Q
    |||| ||| |||||||||| |||||||||||||||||||||  || |||||||  || ||||||||||    
T  51292280 aaaggttcgtattaacattgtgtttattggtcatgtcgactatggaaagtcaaatactgctggtcatt 51292213  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 38137489 - 38137547
Alignment:
Q  76 tattaacattctgtttattggtcatgtcgactccgggaagtcaacgacggctggtcatt 134  Q
    ||||||| || || ||||||||||||| ||||| ||||||||||| || ||||||||||    
T  38137489 tattaacgttgtggttattggtcatgttgactctgggaagtcaactactgctggtcatt 38137547  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 120
Target Start/End: Complemental strand, 3301370 - 3301342
Alignment:
Q  92 attggtcatgtcgactccgggaagtcaac 120  Q
    |||||||||||||||||||||||||||||    
T  3301370 attggtcatgtcgactccgggaagtcaac 3301342  T

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Target: chr1; HSP #8
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 40034320 - 40034387
Alignment:
Q  67 aaagtttcctattaacattctgtttattggtcatgtcgactccgggaagtcaacgacggctggtcatt 134  Q
    |||| ||| |||||||||  | ||||||||| |||||||||| ||||||||||| || | ||||||||    
T  40034320 aaaggttcatattaacatcgtatttattggtaatgtcgactctgggaagtcaaccactggtggtcatt 40034387  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 34691490 - 34691423
Alignment:
Q  67 aaagtttcctattaacattctgtttattggtcatgtcgactccgggaagtcaacgacggctggtcatt 134  Q
    |||| ||| ||| |||||| ||||||||||||||||| |||| ||||||||||| |||||||||||||    
T  34691490 aaaggttcatatcaacattgtgtttattggtcatgtcaactctgggaagtcaactacggctggtcatt 34691423  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 34713902 - 34713835
Alignment:
Q  67 aaagtttcctattaacattctgtttattggtcatgtcgactccgggaagtcaacgacggctggtcatt 134  Q
    |||| ||| ||| |||||| ||||||||||||||||| |||| ||||||||||| |||||||||||||    
T  34713902 aaaggttcatatcaacattgtgtttattggtcatgtcaactctgggaagtcaactacggctggtcatt 34713835  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 33861504 - 33861451
Alignment:
Q  67 aaagtttcctattaacattctgtttattggtcatgtcgactccgggaagtcaac 120  Q
    |||||||| |||||||||| || ||||||||||||| ||||| |||||||||||    
T  33861504 aaagtttcatattaacattgtggttattggtcatgttgactctgggaagtcaac 33861451  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 16352293 - 16352226
Alignment:
Q  67 aaagtttcctattaacattctgtttattggtcatgtcgactccgggaagtcaacgacggctggtcatt 134  Q
    |||| ||| |||||||||| || |||||||||||||| |||| ||||||||||| || || |||||||    
T  16352293 aaaggttcatattaacattgtggttattggtcatgtcaactctgggaagtcaaccaccgccggtcatt 16352226  T

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