View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4306-Insertion-45 (Length: 70)
Name: NF4306-Insertion-45
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4306-Insertion-45 |
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| [»] chr3 (8 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 59; Significance: 1e-25; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-25
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 11245566 - 11245508
Alignment:
| Q |
12 |
atactaacatcactgtgctacctgattcaattggtagtttggtgcagttgcgctatctt |
70 |
Q |
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| T |
11245566 |
atactaacatcactgtgctacctgattcaattggtagtttggtgcagttgcgctatctt |
11245508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 11158960 - 11158903
Alignment:
| Q |
12 |
atactaacatcactgtgctacctgattcaattggtagtttggtgcagttgcgctatct |
69 |
Q |
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| T |
11158960 |
atactaacatcactgtactacctgattcaattggaagtttggtgcagttgcgctatct |
11158903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-18
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 11129972 - 11129915
Alignment:
| Q |
12 |
atactaacatcactgtgctacctgattcaattggtagtttggtgcagttgcgctatct |
69 |
Q |
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| T |
11129972 |
atactaacatcgctgtactacctgattcaattggaagtttggtgcagttgcgctatct |
11129915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 10890432 - 10890489
Alignment:
| Q |
12 |
atactaacatcactgtgctacctgattcaattggtagtttggtgcagttgcgctatct |
69 |
Q |
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|||| |||||||| |||| || ||||||||||| ||||||||||||||||||||||| |
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| T |
10890432 |
atacaaacatcacaatgcttccagattcaattggcagtttggtgcagttgcgctatct |
10890489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 11147797 - 11147740
Alignment:
| Q |
12 |
atactaacatcactgtgctacctgattcaattggtagtttggtgcagttgcgctatct |
69 |
Q |
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|||| |||||||| |||| || ||||||||||| ||||||||||||||||||||||| |
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| T |
11147797 |
atacaaacatcacaatgcttccagattcaattggcagtttggtgcagttgcgctatct |
11147740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 9840003 - 9840044
Alignment:
| Q |
28 |
gctacctgattcaattggtagtttggtgcagttgcgctatct |
69 |
Q |
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| T |
9840003 |
gctacctgattcaattggaaatttggtgcagttgcggtatct |
9840044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 9850881 - 9850922
Alignment:
| Q |
28 |
gctacctgattcaattggtagtttggtgcagttgcgctatct |
69 |
Q |
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|||||||||||||||||| | ||||||||||||||| ||||| |
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| T |
9850881 |
gctacctgattcaattggaaatttggtgcagttgcggtatct |
9850922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 10678580 - 10678621
Alignment:
| Q |
28 |
gctacctgattcaattggtagtttggtgcagttgcgctatct |
69 |
Q |
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| T |
10678580 |
gctacctgattcaattggcaatttggtgcagttgcggtatct |
10678621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 31678661 - 31678618
Alignment:
| Q |
27 |
tgctacctgattcaattggtagtttggtgcagttgcgctatctt |
70 |
Q |
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| T |
31678661 |
tgctaccggattcaattggcagtttggtgcagttgcggtatctt |
31678618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 827033 - 827085
Alignment:
| Q |
17 |
aacatcactgtgctacctgattcaattggtagtttggtgcagttgcgctatct |
69 |
Q |
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| T |
827033 |
aacatcactatgctgccagattcaattggtaatttggtgcagctgcggtatct |
827085 |
T |
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