View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4306-Insertion-47 (Length: 224)
Name: NF4306-Insertion-47
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4306-Insertion-47 |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 44685122 - 44684956
Alignment:
| Q |
11 |
aatagacgtaaggaccttgctatcaacgagtgcatgggcgaaaa-gatgccaatttggatgcaataattgctcgctatgcggagactataaacaagtaca |
109 |
Q |
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| T |
44685122 |
aatagacgtaaggaccttcctatcaacgagtgcatgggcgaaaaagatgccaatttggatgcaataattgctcgctatgcggagactataaacaagtaca |
44685023 |
T |
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| Q |
110 |
acttacgtaacttaggtagggttttggtgcttcagttttctatctttagttattaagttatctaaac |
176 |
Q |
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| T |
44685022 |
acttacgtaacttaggtagggttttggtgcttcatttttctatatttagttattaagttatctaaac |
44684956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 54 - 158
Target Start/End: Complemental strand, 44662664 - 44662558
Alignment:
| Q |
54 |
agatgccaatttggatgcaataattgctcgctatgcggagactataaacaagtacaacttacgtaacttaggtagggttttggtgcttc--agttttcta |
151 |
Q |
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| T |
44662664 |
agatgccaatttggatgcaataattgctcactatgctcagactataaccaagtacaacatgcgtaacttaggtaggcttttggtgcttcatatttttcta |
44662565 |
T |
|
| Q |
152 |
tctttag |
158 |
Q |
| |
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||||||| |
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| T |
44662564 |
tctttag |
44662558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 44684937 - 44684903
Alignment:
| Q |
190 |
ttttcttcttcattaaatttttcattctattcact |
224 |
Q |
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| T |
44684937 |
ttttcttcttcattaaatttttcattctattcact |
44684903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 55 - 163
Target Start/End: Original strand, 29339642 - 29339750
Alignment:
| Q |
55 |
gatgccaatttggatgcaataattgctcgctatgcggagactataaacaagtacaacttacgtaacttaggtagggttttggtgcttcagttttctatct |
154 |
Q |
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||||||||||| |||||| ||||| ||| ||||| |||||||||||||||||||||||| || ||||||||| || ||||| ||||| | |||||||||| |
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| T |
29339642 |
gatgccaatttagatgcagtaattactcactatgtggagactataaacaagtacaacttgcgcaacttaggtgggtttttgatgcttgatttttctatct |
29339741 |
T |
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| Q |
155 |
ttagttatt |
163 |
Q |
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|||| |||| |
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| T |
29339742 |
ttagatatt |
29339750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 55 - 150
Target Start/End: Original strand, 29352804 - 29352899
Alignment:
| Q |
55 |
gatgccaatttggatgcaataattgctcgctatgcggagactataaacaagtacaacttacgtaacttaggtagggttttggtgcttcagttttct |
150 |
Q |
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| T |
29352804 |
gatgccaatttagatgcagtaattgctcactatgtggagactataaacaaatacaacttgtgtaacttaggtaggtttttgatgcttgatttttct |
29352899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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