View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4306-Insertion-49 (Length: 67)
Name: NF4306-Insertion-49
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4306-Insertion-49 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 65; Significance: 2e-29; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-29
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 4645952 - 4645888
Alignment:
| Q |
3 |
acatacaaatcatctgagagaaagaaattggaggaagaaggatacagaattgttggaaacattgg |
67 |
Q |
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| T |
4645952 |
acatacaaatcatctgagagaaagaaattggaggaagaaggatacagaattgttggaaacattgg |
4645888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 4650244 - 4650186
Alignment:
| Q |
5 |
atacaaatcatctgagagaaagaaattggaggaagaaggatacagaattgttggaaaca |
63 |
Q |
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| T |
4650244 |
atacaaatcatctgagagaaagaagcttgaagaagaaggatggagaattattggaaaca |
4650186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 23682012 - 23682068
Alignment:
| Q |
5 |
atacaaatcatctgagagaaagaaattggaggaagaaggatacagaattgttggaaa |
61 |
Q |
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| T |
23682012 |
atacaaatcatctgagagaaagaagcttgaagaagaaggatggagaattattggaaa |
23682068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 41872324 - 41872263
Alignment:
| Q |
3 |
acatacaaatcatctgagagaaagaaattggaggaagaaggatacagaattgttggaaacat |
64 |
Q |
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| T |
41872324 |
acatacaaatcgtcagagagaaagaagctggaggaagaaggatacaaaatcattggaaacat |
41872263 |
T |
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