View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4306-Insertion-63 (Length: 181)

Name: NF4306-Insertion-63
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4306-Insertion-63
NF4306-Insertion-63
[»] chr5 (1 HSPs)
chr5 (55-177)||(27584588-27584708)
[»] chr7 (2 HSPs)
chr7 (55-139)||(32025202-32025286)
chr7 (55-139)||(32033721-32033805)
[»] chr6 (1 HSPs)
chr6 (55-128)||(10502029-10502102)
[»] chr2 (2 HSPs)
chr2 (55-128)||(30426187-30426260)
chr2 (55-130)||(32230038-32230113)
[»] chr1 (2 HSPs)
chr1 (55-114)||(16140434-16140493)
chr1 (55-128)||(9057862-9057935)
[»] chr8 (1 HSPs)
chr8 (55-128)||(4922712-4922785)
[»] chr4 (2 HSPs)
chr4 (55-114)||(16595152-16595211)
chr4 (56-101)||(24977877-24977922)


Alignment Details
Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 55 - 177
Target Start/End: Complemental strand, 27584708 - 27584588
Alignment:
Q  55 actacttgtgatgccatccgagcctttgcctcttgtagagctgctactctttcctgactttctgctgaacttagatatcatttcaagtaaatgacaatac 154  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  27584708 actacttgtgatgccatccgagcatttgcctcttgtagagctgctactctttcctgactttatgctgaacttaggtatcatttcaagtaaatgacaatac 27584609  T
Q  155 atatatatatcaatcaaatagta 177  Q
    ||||  |||||||||||||||||    
T  27584608 atat--atatcaatcaaatagta 27584588  T

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Target: chr7 (Bit Score: 81; Significance: 2e-38; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 55 - 139
Target Start/End: Complemental strand, 32025286 - 32025202
Alignment:
Q  55 actacttgtgatgccatccgagcctttgcctcttgtagagctgctactctttcctgactttctgctgaacttagatatcatttca 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  32025286 actacttgtgatgccatccgagcctttgcctcttgtagagctgctactctttcctgactttctgctgaacttaggtatcatttca 32025202  T

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Target: chr7; HSP #2
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 55 - 139
Target Start/End: Complemental strand, 32033805 - 32033721
Alignment:
Q  55 actacttgtgatgccatccgagcctttgcctcttgtagagctgctactctttcctgactttctgctgaacttagatatcatttca 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  32033805 actacttgtgatgccatccgagcctttgcctcttgtagagctgctactctttcctgactttctgctgaacttaggtatcatttca 32033721  T

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Target: chr6 (Bit Score: 50; Significance: 7e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 55 - 128
Target Start/End: Original strand, 10502029 - 10502102
Alignment:
Q  55 actacttgtgatgccatccgagcctttgcctcttgtagagctgctactctttcctgactttctgctgaacttag 128  Q
    |||||||||||||||||| ||| |||||||||||| ||||||||||||||||| |||||| |||||| ||||||    
T  10502029 actacttgtgatgccatcagagtctttgcctcttgcagagctgctactctttcttgacttcctgctggacttag 10502102  T

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Target: chr2 (Bit Score: 50; Significance: 7e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 55 - 128
Target Start/End: Original strand, 30426187 - 30426260
Alignment:
Q  55 actacttgtgatgccatccgagcctttgcctcttgtagagctgctactctttcctgactttctgctgaacttag 128  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||  | |||||| ||||||    
T  30426187 actacttgtgatgccatccgagcctttgcctcttgcagagctgctactctttcttgatatcctgctggacttag 30426260  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 55 - 130
Target Start/End: Original strand, 32230038 - 32230113
Alignment:
Q  55 actacttgtgatgccatccgagcctttgcctcttgtagagctgctactctttcctgactttctgctgaacttagat 130  Q
    ||||||||||||| ||||||||||||||||||||| | ||||||||||||||| |||  | |||||| ||||||||    
T  32230038 actacttgtgatgtcatccgagcctttgcctcttgcaaagctgctactctttcttgatatcctgctggacttagat 32230113  T

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Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 16140434 - 16140493
Alignment:
Q  55 actacttgtgatgccatccgagcctttgcctcttgtagagctgctactctttcctgactt 114  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||    
T  16140434 actacttgtgatgccatcagagcctttgcctcttgcagagctgctactctttcttgactt 16140493  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 9057935 - 9057862
Alignment:
Q  55 actacttgtgatgccatccgagcctttgcctcttgtagagctgctactctttcctgactttctgctgaacttag 128  Q
    ||||||||| |||||||| ||||||||||||||||  ||||||||||||||||||||||| ||| || ||||||    
T  9057935 actacttgtaatgccatcagagcctttgcctcttgcggagctgctactctttcctgacttcctgttggacttag 9057862  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 4922785 - 4922712
Alignment:
Q  55 actacttgtgatgccatccgagcctttgcctcttgtagagctgctactctttcctgactttctgctgaacttag 128  Q
    ||||||| |||||||||| |||||||||||| ||| ||||||||||||||||| |||||| |||||| ||||||    
T  4922785 actacttatgatgccatcagagcctttgcctattgcagagctgctactctttcttgacttcctgctggacttag 4922712  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 16595152 - 16595211
Alignment:
Q  55 actacttgtgatgccatccgagcctttgcctcttgtagagctgctactctttcctgactt 114  Q
    |||||||||||||||||| |||| ||||| ||||| ||||||||||||||||| ||||||    
T  16595152 actacttgtgatgccatcagagcatttgcttcttgcagagctgctactctttcttgactt 16595211  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 24977877 - 24977922
Alignment:
Q  56 ctacttgtgatgccatccgagcctttgcctcttgtagagctgctac 101  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||    
T  24977877 ctacttgtgatgccatcagagcctttgcctcttgcagagctgctac 24977922  T

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