View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4306-Insertion-64 (Length: 97)
Name: NF4306-Insertion-64
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4306-Insertion-64 |
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| [»] scaffold0449 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: scaffold0449 (Bit Score: 84; Significance: 2e-40; HSPs: 1)
Name: scaffold0449
Description:
Target: scaffold0449; HSP #1
Raw Score: 84; E-Value: 2e-40
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 11463 - 11372
Alignment:
| Q |
6 |
agttcaacacacacacccatacctacatccttataaacatcccacaaaccatcttttaacatcccatcaactagtgaatcgtgtccaaggcg |
97 |
Q |
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| T |
11463 |
agttcagcacacacacccatacctacatccttataaacatcccacataccatcttttaacatcccatcaactagtgaatcgtgtccaaggcg |
11372 |
T |
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Target: chr5 (Bit Score: 84; Significance: 2e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 2e-40
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 43050742 - 43050833
Alignment:
| Q |
6 |
agttcaacacacacacccatacctacatccttataaacatcccacaaaccatcttttaacatcccatcaactagtgaatcgtgtccaaggcg |
97 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43050742 |
agttcagcacacacacccatacctacatccttataaacatcccacaaaccatctttcaacatcccatcaactagtgaatcgtgtccaaggcg |
43050833 |
T |
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