View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4306-Insertion-70 (Length: 129)
Name: NF4306-Insertion-70
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4306-Insertion-70 |
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Alignment Details
Target: chr7 (Bit Score: 97; Significance: 4e-48; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 4e-48
Query Start/End: Original strand, 4 - 108
Target Start/End: Complemental strand, 19810618 - 19810515
Alignment:
| Q |
4 |
ttattggattttaactattggattggacatgtaatttttatttgacaccaaatcctatccctccatttcattttaaccaaacactcaaaattattcactt |
103 |
Q |
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| T |
19810618 |
ttattggattttaactattggattggacatgtaatttt-atttgacaccaaatcctatccctccatttcattttaaccaaacactcaaaattattcactt |
19810520 |
T |
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| Q |
104 |
cacat |
108 |
Q |
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||||| |
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| T |
19810519 |
cacat |
19810515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 3902583 - 3902639
Alignment:
| Q |
45 |
ttgacaccaaatcctatccctccatttcattttaaccaaacactcaaaattattcac |
101 |
Q |
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| T |
3902583 |
ttgacaccaaatcctagccttccatttcattttaatcaaaggctcataattactcac |
3902639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 24720145 - 24720089
Alignment:
| Q |
45 |
ttgacaccaaatcctatccctccatttcattttaaccaaacactcaaaattattcac |
101 |
Q |
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| T |
24720145 |
ttgacaccaaatcctagccttccatttcattttaatcaaaggctcataattactcac |
24720089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 39158312 - 39158260
Alignment:
| Q |
48 |
acaccaaatcctatccctccatttcattttaaccaaacactcaaaattattca |
100 |
Q |
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| T |
39158312 |
acaccaaatcctatccctcaatttcattttaatcaaacaatcaaatttattca |
39158260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 38274254 - 38274197
Alignment:
| Q |
39 |
ttttatttgacaccaaatcctatccctccatttcattttaaccaaacactcaaaatta |
96 |
Q |
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| T |
38274254 |
ttttatttgacaccaaatcttatccctccattttgatttaatcaaacgatcaaaatta |
38274197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 103
Target Start/End: Original strand, 39481427 - 39481490
Alignment:
| Q |
40 |
tttatttgacaccaaatcctatccctccatttcattttaaccaaacactcaaaattattcactt |
103 |
Q |
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||||||||| || | |||||||||||||||||| || || |||||| ||||||||||| |||| |
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| T |
39481427 |
tttatttgagacaagatcctatccctccatttcgattaaatcaaacaatcaaaattatttactt |
39481490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 26213620 - 26213563
Alignment:
| Q |
39 |
ttttatttgacaccaaatcctatccctccatttcattttaaccaaacactcaaaatta |
96 |
Q |
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||||||||||||||||||| ||||||||||||| ||||| ||||| ||||||||| |
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| T |
26213620 |
ttttatttgacaccaaatcttatccctccattttgatttaatcaaacgatcaaaatta |
26213563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 51447550 - 51447462
Alignment:
| Q |
39 |
ttttatttgacaccaaatcctatccctccatttcattttaaccaaacactcaaaattattcac-----ttcacataatttccttcctta |
122 |
Q |
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||||||||||||||||||| ||| ||||||||| ||||| ||||| ||||||||| |||| ||||||| ||||||||||||| |
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| T |
51447550 |
ttttatttgacaccaaatcttattcctccattttgatttaatcaaacgatcaaaattagtcactagtgttcacatgatttccttcctta |
51447462 |
T |
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