View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4306-Insertion-78 (Length: 63)
Name: NF4306-Insertion-78
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4306-Insertion-78 |
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| [»] scaffold0618 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 50; Significance: 2e-20; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 44067774 - 44067827
Alignment:
| Q |
6 |
ggcgtaagcatataaggtgtcttggtaacctttgaaggcgcaacggtagaaaac |
59 |
Q |
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| T |
44067774 |
ggcgtaagcatataaggtgtcttggtaacctttgaaggcacaacggtagaaaac |
44067827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 44087530 - 44087473
Alignment:
| Q |
6 |
ggcgtaagcatataaggtgtcttggtaacctttgaaggcgcaacggtagaaaacagag |
63 |
Q |
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| T |
44087530 |
ggcgtaaacatataaagtgtcttggaagcctttgaaggcgcaacggtagaaaacagag |
44087473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 44093080 - 44093137
Alignment:
| Q |
6 |
ggcgtaagcatataaggtgtcttggtaacctttgaaggcgcaacggtagaaaacagag |
63 |
Q |
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| T |
44093080 |
ggcgtaaacatataaagtgtcttggaagcctttgaaggcgcaacggtagaaaacagag |
44093137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0618 (Bit Score: 42; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0618
Description:
Target: scaffold0618; HSP #1
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 6831 - 6774
Alignment:
| Q |
6 |
ggcgtaagcatataaggtgtcttggtaacctttgaaggcgcaacggtagaaaacagag |
63 |
Q |
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| T |
6831 |
ggcgtaaacatataaagtgtcttggaagcctttgaaggcgcaacggtagaaaacagag |
6774 |
T |
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