View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4306-Insertion-84 (Length: 172)
Name: NF4306-Insertion-84
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4306-Insertion-84 |
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| [»] chr5 (3 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 121; Significance: 3e-62; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 2 - 172
Target Start/End: Original strand, 17143066 - 17143235
Alignment:
| Q |
2 |
aatattcaatgagcttattatgatgt-atagagtcctacatcatacatcgaacgatatatagtttgaacatgtatttataagtgaggacaatctttaact |
100 |
Q |
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| T |
17143066 |
aatattcaatgagcttattatgatgttatagagtcctacatcatacatcgaacgatatatagtttgaacatgtgtttataagtgaagataatcttcacct |
17143165 |
T |
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| Q |
101 |
cataaatcaatttggtaaggataaattaggctcaacacgatttttaagacggtatcagagtctcctccaaga |
172 |
Q |
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| T |
17143166 |
cataaatcagttttgtaaggataagttaggctcaacacgatttttaagacggtatc--agtctcctccaaga |
17143235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 24270118 - 24270082
Alignment:
| Q |
136 |
cacgatttttaagacggtatcagagtctcctccaaga |
172 |
Q |
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| T |
24270118 |
cacgatttttaagatggtatcagagcctcctccaaga |
24270082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 24346749 - 24346713
Alignment:
| Q |
136 |
cacgatttttaagacggtatcagagtctcctccaaga |
172 |
Q |
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| T |
24346749 |
cacgatttttaagatggtatcagagcctcctccaaga |
24346713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 39348375 - 39348330
Alignment:
| Q |
126 |
ttaggctcaacacgatttttaagacggtatcagagtctcctccaag |
171 |
Q |
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| T |
39348375 |
ttaggcccaacacgatttctaagatggtatcagagcctcctccaag |
39348330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 38629913 - 38629949
Alignment:
| Q |
136 |
cacgatttttaagacggtatcagagtctcctccaaga |
172 |
Q |
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| T |
38629913 |
cacgatttttaagatggtatcagagcctcctccaaga |
38629949 |
T |
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