View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4306-Insertion-97 (Length: 105)

Name: NF4306-Insertion-97
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4306-Insertion-97
NF4306-Insertion-97
[»] chr8 (6 HSPs)
chr8 (1-105)||(15722626-15722730)
chr8 (1-102)||(15799926-15800027)
chr8 (1-102)||(15813308-15813409)
chr8 (5-102)||(15764477-15764574)
chr8 (5-103)||(15697418-15697516)
chr8 (5-102)||(15805458-15805555)


Alignment Details
Target: chr8 (Bit Score: 85; Significance: 5e-41; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 5e-41
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 15722730 - 15722626
Alignment:
Q  1 aaaacataagcagctagattggaaattacaactaagcattgtcaatggaatcgcaagaggactacagtaccttcacgaggactctcgacttagagtcatc 100  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||    
T  15722730 aaaacataagcaactagattggaaattacaactaagcattgtaaatggaatcgcaagaggactacaatacctgcatgaggactctcgacttagagtcatc 15722631  T
Q  101 catcg 105  Q
    |||||    
T  15722630 catcg 15722626  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 6e-25
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 15800027 - 15799926
Alignment:
Q  1 aaaacataagcagctagattggaaattacaactaagcattgtcaatggaatcgcaagaggactacagtaccttcacgaggactctcgacttagagtcatc 100  Q
    |||||||||||| |||||||||||||||| |||||||||| |||||||||| ||||||||| | |  |||||||| ||||| |||||||||||||| |||    
T  15800027 aaaacataagcatctagattggaaattacgactaagcattatcaatggaattgcaagaggattgctataccttcatgaggattctcgacttagagtaatc 15799928  T
Q  101 ca 102  Q
    ||    
T  15799927 ca 15799926  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 15813409 - 15813308
Alignment:
Q  1 aaaacataagcagctagattggaaattacaactaagcattgtcaatggaatcgcaagaggactacagtaccttcacgaggactctcgacttagagtcatc 100  Q
    |||||||||||| |||||||||||| ||| |||||||||| |||| ||||||||||||||||| |  |||||||| ||||| |||| ||||||||| |||    
T  15813409 aaaacataagcatctagattggaaactacgactaagcattatcaaaggaatcgcaagaggacttctataccttcatgaggattctccacttagagtaatc 15813310  T
Q  101 ca 102  Q
    ||    
T  15813309 ca 15813308  T

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Target: chr8; HSP #4
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 15764574 - 15764477
Alignment:
Q  5 cataagcagctagattggaaattacaactaagcattgtcaatggaatcgcaagaggactacagtaccttcacgaggactctcgacttagagtcatcca 102  Q
    |||||||| |||||||||| ||||| |||||||||||||| |||||| |||| |||||| |  |||||||| ||||| |||||||||||||| |||||    
T  15764574 cataagcatctagattggagattacgactaagcattgtcactggaattgcaaaaggactgctataccttcatgaggattctcgacttagagtaatcca 15764477  T

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Target: chr8; HSP #5
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 15697516 - 15697418
Alignment:
Q  5 cataagcagctagattggaaattacaactaagcattgtcaatggaatcgcaagaggactacagtaccttcacgaggactctcgacttagagtcatccat 103  Q
    |||||| | |||||||||| ||||| |||||| ||| ||||||||||||||||||||||    ||||||||| | || |||||||||||||| ||||||    
T  15697516 cataagaaactagattggacattacgactaagtattatcaatggaatcgcaagaggacttttataccttcaccaagattctcgacttagagttatccat 15697418  T

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Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 15805555 - 15805458
Alignment:
Q  5 cataagcagctagattggaaattacaactaagcattgtcaatggaatcgcaagaggactacagtaccttcacgaggactctcgacttagagtcatcca 102  Q
    ||||||||  ||||||||| ||||| || ||||||| |||||||||| |||| |||||| |  |||||||| ||||| |||||||||||||| |||||    
T  15805555 cataagcacatagattggagattacgacgaagcattatcaatggaattgcaaaaggactgctataccttcatgaggattctcgacttagagtaatcca 15805458  T

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