View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4306-Insertion-98 (Length: 135)
Name: NF4306-Insertion-98
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4306-Insertion-98 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 8e-62; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 8e-62
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 51034910 - 51035033
Alignment:
| Q |
12 |
ccaaggatgtctatatctcaatggagctgaatgtaaagcatctaaattagtgttttcaatgataaatctaacataacttggaatctcctctagcttgctt |
111 |
Q |
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| T |
51034910 |
ccaaggatgtctatatctcaatggagctgaatgtaaagcatctaaattagtgttttctatgataaatctaacataacttggaatctcctctagcttgctt |
51035009 |
T |
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| Q |
112 |
aacacatattgttttagtttagca |
135 |
Q |
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| T |
51035010 |
aacacatattgttttagtttagca |
51035033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 9e-31
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 51068953 - 51069076
Alignment:
| Q |
12 |
ccaaggatgtctatatctcaatggagctgaatgtaaagcatctaaattagtgttttcaatgataaatctaacataacttggaatctcctctagcttgctt |
111 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||| || ||||| |||||| || |||||| |||||| || | |||||||||| || |
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| T |
51068953 |
ccaaggatgtctatatctcaatggagctgaatggaaagcatctaaatctgttttttctatgatagatataacattacttggcatattctctagcttgttt |
51069052 |
T |
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| Q |
112 |
aacacatattgttttagtttagca |
135 |
Q |
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| T |
51069053 |
aacacatattgcttcagtttagca |
51069076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 51030632 - 51030755
Alignment:
| Q |
12 |
ccaaggatgtctatatctcaatggagctgaatgtaaagcatctaaattagtgttttcaatgataaatctaacataacttggaatctcctctagcttgctt |
111 |
Q |
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|||||||||||||| ||||||||||||||| || || |||||||| | |||||||| |||| | | |||||| |||||| |||| ||||| |||| || |
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| T |
51030632 |
ccaaggatgtctatgtctcaatggagctgattgaaatgcatctaattctgtgttttctatgaaatgtttaacatcacttggcatcttctctaacttgttt |
51030731 |
T |
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| Q |
112 |
aacacatattgttttagtttagca |
135 |
Q |
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| T |
51030732 |
aacacatattgttttagcttagca |
51030755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 51063384 - 51063507
Alignment:
| Q |
12 |
ccaaggatgtctatatctcaatggagctgaatgtaaagcatctaaattagtgttttcaatgataaatctaacataacttggaatctcctctagcttgctt |
111 |
Q |
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|||||||||||||| ||||||||||||||| || || |||||||| | |||||||| |||| | | |||||| |||||| |||| ||||| |||| || |
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| T |
51063384 |
ccaaggatgtctatgtctcaatggagctgattgaaatgcatctaattctgtgttttctatgaaatgtttaacatcacttggcatcttctctaacttgttt |
51063483 |
T |
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| Q |
112 |
aacacatattgttttagtttagca |
135 |
Q |
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| T |
51063484 |
aacacatattgttttagcttagca |
51063507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 40618024 - 40617906
Alignment:
| Q |
16 |
ggatgtctatatctcaatggagctgaatgtaaagcatctaaattagtgttttcaatgataaatctaacataacttggaatctcctctagcttgcttaaca |
115 |
Q |
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|||| |||||||||||||||||||||||| |||||||||| | ||||||||| |||| | ||||||||| |||||| || | ||||| ||| |||| | |
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| T |
40618024 |
ggatttctatatctcaatggagctgaatggaaagcatctatctcagtgttttctatgaaagatctaacatcacttggcattttctctaacttctttaata |
40617925 |
T |
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| Q |
116 |
catattgttttagtttagc |
134 |
Q |
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|||||| ||| |||||||| |
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| T |
40617924 |
catattctttcagtttagc |
40617906 |
T |
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