View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4306_high_1 (Length: 831)
Name: NF4306_high_1
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4306_high_1 |
 | |
|
| [»] scaffold0454 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 517; Significance: 0; HSPs: 24)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 253 - 813
Target Start/End: Original strand, 5613627 - 5614187
Alignment:
| Q |
253 |
ctgataggttctctagttttgaaagggaagaagcaagaggtcctgatagattacagtttgacatgctcagttcttgtaggttgctcaaaggcaacaaagc |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5613627 |
ctgataggttctctagttttgaaagggaagaatcaagaggtcctgatagattacagttagacatgctcagttcttgtaggtcgctcaaaggcaacaaagc |
5613726 |
T |
|
| Q |
353 |
attgatccattcatgtccctgagatgttatacttataccatctagatacagtcgcctcatattgatgagattttggataagcttttgtaaatttgggatt |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5613727 |
attgatccattcatgtccctgagatgttatacttataccatctagatacagttgcctcatattggtgagattttggataagcttttgtaaatttgggatt |
5613826 |
T |
|
| Q |
453 |
ttaggttttgtgtcgacatcagaagagagatcaagagtaaccaacctcgtgagctgggaaatctctattggaatctgccccacaaattcattatatgaca |
552 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5613827 |
ttaggttttgtgtcgacataagaagagagatcaagagtaaccaacctcgtgagctgggaaatctctattggaatctgccccacaaattcattatatgaca |
5613926 |
T |
|
| Q |
553 |
aatcaagataagttaacttcaccaacttgttgaatgctgatggaatggaagaatttaaataattatcagccaagttcagtttcttgagatgtaggagatt |
652 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5613927 |
aatcaagataagttaacttcaccaacttgttgaatgctgatggaatggaagaatttaaataattattagccaagttcagtttcttgagatgtaggagatt |
5614026 |
T |
|
| Q |
653 |
gaaaagactacttgattcgtcaattccaccagaaatagattctccactcaggtcaaggccaataatatatccctcgttgtcacaagtaacgccactccaa |
752 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5614027 |
gaaaagactacttgattcttcaattccaccagaaatagattcttcactcaggtcaaggccaataatatatccctcgttgtcacaagtaacgccactccaa |
5614126 |
T |
|
| Q |
753 |
ttgcagcaagcagtgcttttattccacaatattagttttgtggaattttcaggatgaaatg |
813 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5614127 |
ttgcagcatgcaatgcttttattccacaatattagttttgtggaattttcaggatgaaatg |
5614187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 17 - 815
Target Start/End: Complemental strand, 5895114 - 5894313
Alignment:
| Q |
17 |
tgtgttactcagtataatgctatggagatattcactaagtgagtagtttggaaaataaacatggagattgggattgtcagataagtcaatatctgaaagt |
116 |
Q |
| |
|
|||||||| || |||||||||||| ||| |||||||||||||||||| ||||||| |||| ||||||||||| ||| |||||||||||||| |||| ||| |
|
|
| T |
5895114 |
tgtgttacgcaatataatgctatgaagagattcactaagtgagtagtctggaaaaaaaacttggagattggggttgccagataagtcaataactgacagt |
5895015 |
T |
|
| Q |
117 |
gttctaatttgaaagatggtttgtggaaatgtactggtcaacccacaatcataaagattgagggtggttaggtttttaaaattagcaaatgtttgtggca |
216 |
Q |
| |
|
|| |||||||| ||||| ||||||||||||||| | |||| ||||| | |||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
5895014 |
gtcctaatttggaagatcttttgtggaaatgtaccgatcaatccacactttcgaagattgagggtggttaggtttttaaaattggcaaatgtttctggca |
5894915 |
T |
|
| Q |
217 |
ctggggatgaaaaattgttctcaccaagaataatgactgataggttctctagttttgaaagggaagaagcaagaggtcctgatagattacagtttgacat |
316 |
Q |
| |
|
|| ||||||||||||||| | ||||||||||||||| ||||||| |||| |||| ||||||||| |||| | |||||| | || ||| || ||||| |
|
|
| T |
5894914 |
atgaggatgaaaaattgtttcgataaagaataatgactgacaggttctgtagtcttgatagggaagaatcaagggatcctgacaaatcacaattagacat |
5894815 |
T |
|
| Q |
317 |
gctcagttcttgtaggttgctcaaaggcaacaaagcattgatccattcatgtccctgagatgttatacttataccatctagatacagtcgcctcatattg |
416 |
Q |
| |
|
||||| ||||||||||| | |||||| | |||||||||| |||||| ||||| ||||||||||||| |||||||||||||||||||| |||| |||||| |
|
|
| T |
5894814 |
gctcaattcttgtaggtcacgcaaaggtatcaaagcattgctccatttatgtctctgagatgttatagttataccatctagatacagttgcctaatattg |
5894715 |
T |
|
| Q |
417 |
atgagattttggataagcttttgtaaatttgggattttaggttttgtg---tcgacatcagaagagagatcaagagtaaccaacctcgtgagctgggaaa |
513 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||| ||| |||||||| ||||||||||||||||||||||||| || || || |||| |
|
|
| T |
5894714 |
gtgagattttggataaacttttgtaaatttgggatattaggtttcgtgcgaacgacatcaaaagagagatcaagagtaaccaaccttgtaagttgtgaaa |
5894615 |
T |
|
| Q |
514 |
tctctattggaatctgccccacaaattcattatatgacaaatcaagataagttaacttcaccaacttgttgaatgctgatggaatggaagaatttaaata |
613 |
Q |
| |
|
|||| |||||||||||||||||||| | | |||||||| |||||||| |||||| |||| ||| ||||| |||||||||| |||||| |||| |
|
|
| T |
5894614 |
tctcaattggaatctgccccacaaagctagcctttgacaaattcagataagtcaacttctccaatttgctgaatcctgatggaattagagaattgaaatt |
5894515 |
T |
|
| Q |
614 |
attatcagccaagttcagtttcttgagatgtaggagattgaaaagactacttgattcgtcaattccaccagaaatagattctccactcaggtcaaggcca |
713 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||||||| ||||| |||| || ||||||| ||| ||| |||| |||||||||||| |
|
|
| T |
5894514 |
gttataagccaagttcagttttttgagatgtaggagattgaaaagactgcttgaatcgttaaatccaccatggatatcttcgtcactaaggtcaaggcca |
5894415 |
T |
|
| Q |
714 |
ataatatatccctcgttgtcacaagtaacgccactccaattgcagcaagcagtgcttttattccacaatattagttttgtggaattttcaggatgaaatg |
813 |
Q |
| |
|
|||| || |||||| ||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||| || ||| |||||||||||||| |
|
|
| T |
5894414 |
ataacatgtccctcattgtcacaagttacaccactccaattgcagcaagcagtggttttattccacaatattagtttggtagaaccttcaggatgaaatg |
5894315 |
T |
|
| Q |
814 |
tg |
815 |
Q |
| |
|
|| |
|
|
| T |
5894314 |
tg |
5894313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 18 - 514
Target Start/End: Complemental strand, 5848049 - 5847557
Alignment:
| Q |
18 |
gtgttactcagtataatgctatggagatattcactaagtgagtagtttggaaaataaacatggagattgggattgtcagataagtcaatatctgaaagtg |
117 |
Q |
| |
|
||||||| || |||||||||||| ||| ||||||||||||||| || ||||||| || ||||||| ||||| |||||||||||||||||| |||| |
|
|
| T |
5848049 |
gtgttacgcaatataatgctatgaagagattcactaagtgagtggtctggaaaaaaaccatggaggttggggttgtcagataagtcaatagctgac---- |
5847954 |
T |
|
| Q |
118 |
ttctaatttgaaagatggtttgtggaaatgtactggtcaacccacaatcataaagattgagggtggttaggtttttaaaattagcaaatgtttgtggcac |
217 |
Q |
| |
|
|| ||||||| ||||| ||||||||||||||| | |||| ||||| | |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5847953 |
ttttaatttggaagatattttgtggaaatgtaccgatcaatccacactttcgaagattgagggtggttaggtttttaaaattggcaaatgtttgtggcac |
5847854 |
T |
|
| Q |
218 |
tggggatgaaaaattgttctcaccaagaataatgactgataggttctctagttttgaaagggaagaagcaagaggtcctgatagattacagtttgacatg |
317 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||| | |||||||||||| ||| ||||||||| |||| ||||||||||||| ||| | |||||| |
|
|
| T |
5847853 |
tggggatgaaaagttgttctcaccaagaacaatgaccgtcaggttctctagtcttgttagggaagaatcaaggggtcctgatagatcacaatcagacatg |
5847754 |
T |
|
| Q |
318 |
ctcagttcttgtaggttgctcaaaggcaacaaagcattgatccattcatgtccctgagatgttatacttataccatctagatacagtcgcctcatattga |
417 |
Q |
| |
|
|||| | ||| |||| | ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| | |||| |||||| |
|
|
| T |
5847753 |
ctcaacttttgcaggtcacgcaaaggcaacaaagcattgctccattcatgtccccgagatgttatacttataccatctagatacatttgcctaatattgg |
5847654 |
T |
|
| Q |
418 |
tgagattttggataagcttttgtaaatttgggattttaggttttgtgtcgacatcagaagagagatcaagagtaaccaacctcgtgagctgggaaat |
514 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
5847653 |
tgagattttggataaacttttgtagatttgggattttaggttttgtgtcgacataagaagagagatcaagagtaaccaacctcgtgagttgtgaaat |
5847557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 462
Target Start/End: Complemental strand, 5886269 - 5885824
Alignment:
| Q |
17 |
tgtgttactcagtataatgctatggagatattcactaagtgagtagtttggaaaataaacatggagattgggattgtcagataagtcaatatctgaaagt |
116 |
Q |
| |
|
||||||||||| | |||||||||| |||||||||||||||||||| | || ||| |||||||||||||||| |||||||||||||||||| ||| ||| |
|
|
| T |
5886269 |
tgtgttactcactctaatgctatgaagatattcactaagtgagtaatcagggaaaaaaacatggagattggggttgtcagataagtcaataattgacagt |
5886170 |
T |
|
| Q |
117 |
gttctaatttgaaagatggtttgtggaaatgtactggtcaacccacaatcataaagattgagggtggttaggtttttaaaattagcaaatgtttgtggca |
216 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| ||||| || |||| | |||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5886169 |
gttctaatttggaagatcttttgtggaaatgtatctgtcaatccgcaattttgaagattgagggtggttaggtttttaaaattggcaaatgtttgtggca |
5886070 |
T |
|
| Q |
217 |
ctggggatgaaaaattgttctcaccaagaataatgactgataggttctctagttttgaaagggaagaagcaagaggtcctgatagattacagtttgacat |
316 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||| |||| |||||||||||| ||||||| |||| |
|
|
| T |
5886069 |
ctggggatgaaaaattgttctcgccaagaataatgaccgataggttctctagttttgaaagggaggaatcaaggggtcctgatagactacagttatacat |
5885970 |
T |
|
| Q |
317 |
gctcagttcttgtaggttgctcaaaggcaacaaagcattgatccattcatgtccctgagatgttatacttataccatctagatacagtcgcctcatattg |
416 |
Q |
| |
|
||||| ||||| | || | || || ||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
5885969 |
gctcaactcttgcaagtcacgcagcggtaacaaagcattactccattcatatcccggagatgttatacttataccatctagatacagttgcctaatattg |
5885870 |
T |
|
| Q |
417 |
atgagattttggataagcttttgtaaatttgggattttaggttttg |
462 |
Q |
| |
|
| |||||||||||||||||||||| ||||| ||||||| |||||| |
|
|
| T |
5885869 |
gtaagattttggataagcttttgtagatttgagattttaagttttg |
5885824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 475 - 790
Target Start/End: Complemental strand, 5885760 - 5885445
Alignment:
| Q |
475 |
aagagagatcaagagtaaccaacctcgtgagctgggaaatctctattggaatctgccccacaaattcattatatgacaaatcaagataagttaacttcac |
574 |
Q |
| |
|
|||||| |||||||||||||||||| || || ||||||||||| |||||||||| |||| |||| || || |||||||| |||||||| |||||| | |
|
|
| T |
5885760 |
aagagatatcaagagtaaccaaccttgtaagatgggaaatctcaattggaatctccccctgaaatccagcatctgacaaattcagataagtcaacttctc |
5885661 |
T |
|
| Q |
575 |
caacttgttgaatgctgatggaatggaagaatttaaataattatcagccaagttcagtttcttgagatgtaggagattgaaaagactacttgattcgtca |
674 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||| |
|
|
| T |
5885660 |
caacttgttgaaagctgatggaatggaagaatttaaataattatcagccaagttcagtttcttgagatgcaagagactgaaaagactacttgattcgtca |
5885561 |
T |
|
| Q |
675 |
attccaccagaaatagattctccactcaggtcaaggccaataatatatccctcgttgtcacaagtaacgccactccaattgcagcaagcagtgcttttat |
774 |
Q |
| |
|
| ||||||| |||||||||||||||||||||||||||||| || ||||||||| |||||||||||||| ||||||||| |||||||||| ||| ||| || |
|
|
| T |
5885560 |
aatccaccaaaaatagattctccactcaggtcaaggccaacaacatatccctcattgtcacaagtaacaccactccaactgcagcaagccgtgttttgat |
5885461 |
T |
|
| Q |
775 |
tccacaatattagttt |
790 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
5885460 |
tccacaatattagttt |
5885445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 17 - 400
Target Start/End: Original strand, 5565085 - 5565468
Alignment:
| Q |
17 |
tgtgttactcagtataatgctatggagatattcactaagtgagtagtttggaaaataaacatggagattgggattgtcagataagtcaatatctgaaagt |
116 |
Q |
| |
|
||||| ||||| |||||||||||| ||| ||||||| |||||||||| ||| || || ||||||||||| || |||||||||||| | || | | |
|
|
| T |
5565085 |
tgtgtaactcactataatgctatgaagagattcacttagtgagtagtctgggaatgaaccatggagattgtagttaaatgataagtcaataacagacaat |
5565184 |
T |
|
| Q |
117 |
gttctaatttgaaagatggtttgtggaaatgtactggtcaacccacaatcataaagattgagggtggttaggtttttaaaattagcaaatgtttgtggca |
216 |
Q |
| |
|
||| ||| ||||| || ||||||||||||||| ||||||||||||||| |||| |||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
5565185 |
gtttcaatctgaaaaatattttgtggaaatgtaccggtcaacccacaatctacaagactgagggtggtcaggtttttaaaattggcaaatgtttgtggca |
5565284 |
T |
|
| Q |
217 |
ctggggatgaaaaattgttctcaccaagaataatgactgataggttctctagttttgaaagggaagaagcaagaggtcctgatagattacagtttgacat |
316 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||| |||| ||||||| |
|
|
| T |
5565285 |
ctggggatgaaaaattattgtcaccaagaataatgactgataggttctctagttttgaaagggaagaatcaaggggtcctgaaagaccacagcttgacat |
5565384 |
T |
|
| Q |
317 |
gctcagttcttgtaggttgctcaaaggcaacaaagcattgatccattcatgtccctgagatgttatacttataccatctagata |
400 |
Q |
| |
|
|| | ||||||||||| | || ||||||||| | || ||||||||| ||| ||||||| ||||||||||||||||||||| |
|
|
| T |
5565385 |
gcctaattcttgtaggtcacggaacggcaacaaaagactgctccattcatatccttgagatggtatacttataccatctagata |
5565468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 595 - 815
Target Start/End: Complemental strand, 5847548 - 5847322
Alignment:
| Q |
595 |
gaatggaagaatttaaataattatcagccaagttcagtttcttgagatgtaggagattgaaaagactacttgattcgtcaattccaccagaaatagattc |
694 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||| || |||||| ||||||||||| |
|
|
| T |
5847548 |
gaatggaagaatttaaataattatgagccaagttcagttccttgagatgtaggagattgaaaagaatacttgattcgttaaatccacctgaaatagattc |
5847449 |
T |
|
| Q |
695 |
tccactcaggtcaaggccaataatatatccctcgttgtcacaagtaacgccactccaat------tgcagcaagcagtgcttttattccacaatattagt |
788 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||| |||||||| ||||| |||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5847448 |
ttcactcaggtcaaggccaataacatatccctcattgtcacaggtaacaccactccaattgcacttgcagcaagcaatgcttttattccacaatattagt |
5847349 |
T |
|
| Q |
789 |
tttgtggaattttcaggatgaaatgtg |
815 |
Q |
| |
|
|| |||||||| ||||||||||||||| |
|
|
| T |
5847348 |
ttcgtggaattctcaggatgaaatgtg |
5847322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 473 - 807
Target Start/End: Original strand, 5559765 - 5560099
Alignment:
| Q |
473 |
agaagagagatcaagagtaaccaacctcgtgagctgggaaatctctattggaatctgccccacaaattcattatatgacaaatcaagataagttaacttc |
572 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||| ||||| ||||||||||| | ||||||||||| ||||| || |||||| |
|
|
| T |
5559765 |
agaagagagatcaagagtaaccaaccttttgagctgagaaatctctacaggaatttgccccacaaagctagcatatgacaaattcagatatgtcaacttc |
5559864 |
T |
|
| Q |
573 |
accaacttgttgaatgctgatggaatggaagaatttaaataattatcagccaagttcagtttcttgagatgtaggagattgaaaagactacttgattcgt |
672 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||| ||||||||||| |||||||||| ||| ||| | | | |||||||||| ||||| |||| |
|
|
| T |
5559865 |
tccaacttgttgaatcctgatggaatggaagaattgaaatagttatcagccaaattcagtttctggaggtgttgcaaactgaaaagactgcttgaatcgt |
5559964 |
T |
|
| Q |
673 |
caattccaccagaaatagattctccactcaggtcaaggccaataatatatccctcgttgtcacaagtaacgccactccaattgcagcaagcagtgctttt |
772 |
Q |
| |
|
|| ||||||| ||| ||| |||| |||||||||||||||| || |||||| ||||||| ||||| || ||||||||||||||||||||||||| |
|
|
| T |
5559965 |
taaatccaccatggatatcttcgtcactaaggtcaaggccaataacatgtccctcaatgtcacatgtaacacccctccaattgcagcaagcagtgctttg |
5560064 |
T |
|
| Q |
773 |
attccacaatattagttttgtggaattttcaggat |
807 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||| |
|
|
| T |
5560065 |
attccacaatattagtttggtggaatattcaggat |
5560099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 17 - 400
Target Start/End: Original strand, 5605402 - 5605786
Alignment:
| Q |
17 |
tgtgttactcagtataatgctatggagatattcactaagtgagtagtttggaaaataaac-atggagattgggattgtcagataagtcaatatctgaaag |
115 |
Q |
| |
|
|||||||||| |||||||| || ||| |||||||||||||||||| ||||||| |||| ||| || || || ||||||||||||||||||||||| || |
|
|
| T |
5605402 |
tgtgttactcgccataatgctgtgaagagattcactaagtgagtagtctggaaaaaaaaccatgaaggttagggttgtcagataagtcaatatctgacag |
5605501 |
T |
|
| Q |
116 |
tgttctaatttgaaagatggtttgtggaaatgtactggtcaacccacaatcataaagattgagggtggttaggtttttaaaattagcaaatgtttgtggc |
215 |
Q |
| |
|
||||||||||||||| || ||||||||||||| | ||||| |||||||| | |||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
5605502 |
tgttctaatttgaaatatattttgtggaaatgttccagtcaatccacaatcgttaagattgagggtggttaggtttttaaaattggcaaatgtttctggc |
5605601 |
T |
|
| Q |
216 |
actggggatgaaaaattgttctcaccaagaataatgactgataggttctctagttttgaaagggaagaagcaagaggtcctgatagattacagtttgaca |
315 |
Q |
| |
|
||||||||||||||||||||| || |||||| |||||| |||| |||||||| ||| ||||||||| |||| |||||||| | | ||||| ||||| |
|
|
| T |
5605602 |
actggggatgaaaaattgttcccatcaagaagaatgacagataagttctctaaccttgctagggaagaatcaaggggtcctgaaaaaccacagtctgaca |
5605701 |
T |
|
| Q |
316 |
tgctcagttcttgtaggttgctcaaaggcaacaaagcattgatccattcatgtccctgagatgttatacttataccatctagata |
400 |
Q |
| |
|
| | | ||||||||||| | | ||||||||| | || ||||||||| ||| |||| || ||||||||||||||||||||| |
|
|
| T |
5605702 |
tacctaattcttgtaggtcacggagcggcaacaaaagactgctccattcatatccttgagctggtatacttataccatctagata |
5605786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 46 - 438
Target Start/End: Original strand, 3749266 - 3749658
Alignment:
| Q |
46 |
attcactaagtgagtagtttggaaaataaacatggagattgggattgtcagataagtcaatatctgaaagtgttctaatttgaaagatggtttgtggaaa |
145 |
Q |
| |
|
||||||| | |||||||| ||||||| | |||||||||| |||| | | ||||||||| ||| ||||||| ||| |||||||| | |||||||| |
|
|
| T |
3749266 |
attcactcattgagtagtgtggaaaaaagccatggagatttttgttgttaaacaagtcaatagttgacagtgttccaatctgaaagattgcatgtggaaa |
3749365 |
T |
|
| Q |
146 |
tgtactggtcaacccacaatcataaagattgagggtggttaggtttttaaaattagcaaatgtttgtggcactggggatgaaaaattgttctcaccaaga |
245 |
Q |
| |
|
||||| |||||| ||||| |||| |||||||||| | |||||||||||| |||||||||| |||||||| ||||||||||||||| || ||||| |
|
|
| T |
3749366 |
tgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaaga |
3749465 |
T |
|
| Q |
246 |
ataatgactgataggttctctagttttgaaagggaagaagcaagaggtcctgatagattacagtttgacatgctcagttcttgtaggttgctcaaaggca |
345 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||| |||| |||||||||| || ||||| |||||||||| |||||| | || | ||| |||| |
|
|
| T |
3749466 |
ataatgactgataggttctctagtcttgttagggaagaatcaaggggtcctgataaatcacagtaagacatgctcaattcttgcaagtcacgcaacggca |
3749565 |
T |
|
| Q |
346 |
acaaagcattgatccattcatgtccctgagatgttatacttataccatctagatacagtcgcctcatattgatgagattttggataagctttt |
438 |
Q |
| |
|
||||||||||| || |||||||||| |||||||||||||||| ||||||||||| ||| |||| |||||| |||||||||||| ||| |||| |
|
|
| T |
3749566 |
acaaagcattgctcaattcatgtcctcgagatgttatacttatcccatctagatatagttgcctaatattggtgagattttggacaagatttt |
3749658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 17 - 402
Target Start/End: Original strand, 5858349 - 5858734
Alignment:
| Q |
17 |
tgtgttactcagtataatgctatggagatattcactaagtgagtagtttggaaaataaacatggagattgggattgtcagataagtcaatatctgaaagt |
116 |
Q |
| |
|
||||| ||||| | |||| ||||| ||| ||||||| ||||||||||||||||| || || ||||||| ||| | |||||||||| | || | | |
|
|
| T |
5858349 |
tgtgtcactcactctaattctatgaagagattcacttagtgagtagtttggaaatgaaccacggagattttcgttggaaaataagtcaatcacagacaat |
5858448 |
T |
|
| Q |
117 |
gttctaatttgaaagatggtttgtggaaatgtactggtcaacccacaatcataaagattgagggtggttaggtttttaaaattagcaaatgtttgtggca |
216 |
Q |
| |
|
|||| ||| |||||||| | ||||||||||||| || || ||||| |||| ||||||| || | |||||||||||| |||||||||| || | |
|
|
| T |
5858449 |
gttccaatctgaaagatcttctgtggaaatgtaccggataatgcacaaaatgcaagactgagggtagtcaagtttttaaaatttgcaaatgtttcaggaa |
5858548 |
T |
|
| Q |
217 |
ctggggatgaaaaattgttctcaccaagaataatgactgataggttctctagttttgaaagggaagaagcaagaggtcctgatagattacagtttgacat |
316 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||| || ||| ||||| |||| ||||| |
|
|
| T |
5858549 |
ctggggatgaaaaatagttctcatcaagaataatgactgataggttctctagttttgttagggaagaatcaaggggacctaatagaccacaggaagacat |
5858648 |
T |
|
| Q |
317 |
gctcagttcttgtaggttgctcaaaggcaacaaagcattgatccattcatgtccctgagatgttatacttataccatctagataca |
402 |
Q |
| |
|
||||| |||||||||||| | ||| ||||||||||||||||||||||||||||||| || || |||||||| || ||||||||||| |
|
|
| T |
5858649 |
gctcaattcttgtaggtttcgcaacggcaacaaagcattgatccattcatgtcccttagctgatatacttacactatctagataca |
5858734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 96 - 403
Target Start/End: Complemental strand, 5583173 - 5582866
Alignment:
| Q |
96 |
gataagtcaatatctgaaagtgttctaatttgaaagatggtttgtggaaatgtactggtcaacccacaatcataaagattgagggtggttaggtttttaa |
195 |
Q |
| |
|
|||||||||||| ||| | |||| ||||||||||||||||| ||||||| ||| ||||| |||||| |||| |||||||||||| ||||| | |
|
|
| T |
5583173 |
gataagtcaataaatgagaacgttccaatttgaaagatggtttttggaaatttaccagtcaatccacaagatgcaagactgagggtggttaattttttga |
5583074 |
T |
|
| Q |
196 |
aattagcaaatgtttgtggcactggggatgaaaaattgttctcaccaagaataatgactgataggttctctagttttgaaagggaagaagcaagaggtcc |
295 |
Q |
| |
|
|||| | |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||| ||| ||||||||| |||| || || |
|
|
| T |
5583073 |
aattggaaaatgtttgtggcactggggatgaaaaattgttcccatcaagaataatgactgataggttctttagtcttgttagggaagaatcaaggggacc |
5582974 |
T |
|
| Q |
296 |
tgatagattacagtttgacatgctcagttcttgtaggttgctcaaaggcaacaaagcattgatccattcatgtccctgagatgttatacttataccatct |
395 |
Q |
| |
|
|||||||| ||| | ||||| |||| | |||| ||||| || |||||||||||||| ||||||| |||||||||| | ||||||||| ||||||| |
|
|
| T |
5582973 |
tgatagatcacaataagacatactcaatacttggaggttaggcaggggcaacaaagcattcctccattcttgtccctgagcttttatacttacaccatct |
5582874 |
T |
|
| Q |
396 |
agatacag |
403 |
Q |
| |
|
|||||||| |
|
|
| T |
5582873 |
agatacag |
5582866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 116 - 403
Target Start/End: Complemental strand, 5570946 - 5570659
Alignment:
| Q |
116 |
tgttctaatttgaaagatggtttgtggaaatgtactggtcaacccacaatcataaagattgagggtggttaggtttttaaaattagcaaatgtttgtggc |
215 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||| ||||| |||||| ||||| ||||||||||||| ||||||||||| | |||||||| |||| |
|
|
| T |
5570946 |
tgttccaatttgaaagatattttgtggaaatgtacctgtcaatccacaagatgaaagactgagggtggttagttttttaaaattggaaaatgtttctggc |
5570847 |
T |
|
| Q |
216 |
actggggatgaaaaattgttctcaccaagaataatgactgataggttctctagttttgaaagggaagaagcaagaggtcctgatagattacagtttgaca |
315 |
Q |
| |
|
||| ||||||| |||| |||| || |||||||||||||||||||||||| |||| ||| |||||||||| ||| ||||||||||||| ||| | |||| |
|
|
| T |
5570846 |
actagggatgagaaatagttcccatcaagaataatgactgataggttctttagtcttgttagggaagaagaaaggggtcctgatagatcacaataagaca |
5570747 |
T |
|
| Q |
316 |
tgctcagttcttgtaggttgctcaaaggcaacaaagcattgatccattcatgtccctgagatgttatacttataccatctagatacag |
403 |
Q |
| |
|
| |||| | |||| ||||| | || || |||||||||| ||||||| |||||||||| | ||| ||||| ||||||||||||||| |
|
|
| T |
5570746 |
tactcaatacttggaggttacgcagcggaaacaaagcatcactccattcttgtccctgagcttttaaacttacaccatctagatacag |
5570659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 101 - 446
Target Start/End: Complemental strand, 5852844 - 5852499
Alignment:
| Q |
101 |
gtcaatatctgaaagtgttctaatttgaaagatggtttgtggaaatgtactggtcaacccacaatcataaagattgagggtggttaggtttttaaaatta |
200 |
Q |
| |
|
||||||| | || ||||||| ||| |||||||| | ||||||||||||| ||||| |||||||| ||||| | |||||||| ||||||| ||||||| |
|
|
| T |
5852844 |
gtcaataacagacagtgttccaatctgaaagatcttctgtggaaatgtaccagtcaatccacaatctgaaagactaagggtggtcaggttttgaaaatta |
5852745 |
T |
|
| Q |
201 |
gcaaatgtttgtggcactggggatgaaaaattgttctcaccaagaataatgactgataggttctctagttttgaaagggaagaagcaagaggtcctgata |
300 |
Q |
| |
|
|||||||||| ||| || ||||| |||||||||||| | ||||||||||||||||||||||| ||||||||| ||||||||| |||| || |||| || |
|
|
| T |
5852744 |
gcaaatgtttctggaacgggggaagaaaaattgttcctatcaagaataatgactgataggttccttagttttgatagggaagaatcaagtggccctgcta |
5852645 |
T |
|
| Q |
301 |
gattacagtttgacatgctcagttcttgtaggttgctcaaaggcaacaaagcattgatccattcatgtccctgagatgttatacttataccatctagata |
400 |
Q |
| |
|
||| ||| || ||| ||||| |||||| | | || ||||||||||||||| ||||||| || |||| |||||||| | ||||| | |||||||| |
|
|
| T |
5852644 |
gatcacatttatacaagctcaacatttgtagttcacgcagtggcaacaaagcattgctccattcctgcccctcagatgttagagttatatcttctagata |
5852545 |
T |
|
| Q |
401 |
cagtcgcctcatattgatgagattttggataagcttttgtaaattt |
446 |
Q |
| |
|
|||| |||| || ||| | |||||||||| || |||||||| |||| |
|
|
| T |
5852544 |
cagttgcctaatcttggtcagattttggacaaacttttgtagattt |
5852499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 122 - 446
Target Start/End: Original strand, 5553599 - 5553923
Alignment:
| Q |
122 |
aatttgaaagatggtttgtggaaatgtactggtcaacccacaatcataaagattgagggtggttaggtttttaaaattagcaaatgtttgtggcactggg |
221 |
Q |
| |
|
|||||||||||| ||||||||||||||| || || |||||| |||| | |||||||| ||||||| |||||| |||||||||| ||| || ||| |
|
|
| T |
5553599 |
aatttgaaagatcttttgtggaaatgtacctgttaatccacaagatgtaagactaagggtggtcaggttttgaaaattggcaaatgtttctggaacgggg |
5553698 |
T |
|
| Q |
222 |
gatgaaaaattgttctcaccaagaataatgactgataggttctctagttttgaaagggaagaagcaagaggtcctgatagattacagtttgacatgctca |
321 |
Q |
| |
|
|| |||||||||||| | ||||||||||||| |||||||| | ||||||||| ||||||||| | || || |||| ||||| |||||| ||||||||| |
|
|
| T |
5553699 |
gaagaaaaattgttcctatcaagaataatgaccgataggttttttagttttgatagggaagaatctagtggccctgctagatcacagttatacatgctca |
5553798 |
T |
|
| Q |
322 |
gttcttgtaggttgctcaaaggcaacaaagcattgatccattcatgtccctgagatgttatacttataccatctagatacagtcgcctcatattgatgag |
421 |
Q |
| |
|
|||||||| | | || ||||||||||||||| |||||||| |||||| |||||||| | ||||||| |||| ||||||| |||| || ||| | || |
|
|
| T |
5553799 |
actcttgtagttcacacagcggcaacaaagcattgctccattcaggtccctcagatgttagagttataccttctaaatacagttgcctaatcttggtaag |
5553898 |
T |
|
| Q |
422 |
attttggataagcttttgtaaattt |
446 |
Q |
| |
|
|||||||| || |||||||| |||| |
|
|
| T |
5553899 |
attttggacaaacttttgtagattt |
5553923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 473 - 805
Target Start/End: Complemental strand, 5570568 - 5570236
Alignment:
| Q |
473 |
agaagagagatcaagagtaaccaacctcgtgagctgggaaatctctattggaatctgccccacaaattcattatatgacaaatcaagataagttaacttc |
572 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||| ||||||||||| | ||| ||||||||||| | | |||||| |||| |||||| | ||| || |
|
|
| T |
5570568 |
agaagagagatcaagagtaaccaaccttgtaagctgagaaatctctatagaaatatgccccacaaagttagcatatgataaattcagataattcaacatc |
5570469 |
T |
|
| Q |
573 |
accaacttgttgaatgctgatggaatggaagaatttaaataattatcagccaagttcagtttcttgagatgtaggagattgaaaagactacttgattcgt |
672 |
Q |
| |
|
||||| ||||| ||| |||||||||| |||||| |||| |||||||||||||||| ||| | ||||| ||||| | |||||||||||||| | | |
|
|
| T |
5570468 |
accaatttgttaaatcctgatggaataacagaattgaaattgttatcagccaagttcaatttttgaagatgatggagactaaaaagactacttgaattat |
5570369 |
T |
|
| Q |
673 |
caattccaccagaaatagattctccactcaggtcaaggccaataatatatccctcgttgtcacaagtaacgccactccaattgcagcaagcagtgctttt |
772 |
Q |
| |
|
||| ||| |||| || |||| || | | |||||||||||| | | ||| | | |||||||| | || ||| |||||| ||||||||||||||| || |
|
|
| T |
5570368 |
caaaaccatcagagatgtcttctgcaataaagtcaaggccaatcacgtgtcctttgctgtcacaacttacaccattccaatagcagcaagcagtgctctt |
5570269 |
T |
|
| Q |
773 |
attccacaatattagttttgtggaattttcagg |
805 |
Q |
| |
|
|||||| ||| ||||||| |||||| ||||||| |
|
|
| T |
5570268 |
attccataattttagtttggtggaagtttcagg |
5570236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 473 - 780
Target Start/End: Original strand, 5858820 - 5859127
Alignment:
| Q |
473 |
agaagagagatcaagagtaaccaacctcgtgagctgggaaatctctattggaatctgccccacaaattcattatatgacaaatcaagataagttaacttc |
572 |
Q |
| |
|
|||||||| |||||||||||||||||| | ||||||||||| ||||||||||||| ||| |||| | || || | || ||||| || |||||| |
|
|
| T |
5858820 |
agaagagatatcaagagtaaccaaccttataagctgggaaatttctattggaatcttcccgtgaaatctagcatctgtaagattcagatatgtcaacttc |
5858919 |
T |
|
| Q |
573 |
accaacttgttgaatgctgatggaatggaagaatttaaataattatcagccaagttcagtttcttgagatgtaggagattgaaaagactacttgattcgt |
672 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| |||| ||| ||||||||||| ||| | ||||||| ||||| || ||||| |||| | | |
|
|
| T |
5858920 |
tccagcttgttgaatgctgatggaatggaagaattgaaattgttaaaagccaagttcactttttggagatgttggagaccaaatagactgcttgtatttt |
5859019 |
T |
|
| Q |
673 |
caattccaccagaaatagattctccactcaggtcaaggccaataatatatccctcgttgtcacaagtaacgccactccaattgcagcaagcagtgctttt |
772 |
Q |
| |
|
||| ||||||| | ||| ||||| |||||| |||||||||||||| || ||| || |||||||||| || |||||||| |||||||| ||| |||||| |
|
|
| T |
5859020 |
caaatccaccatagatatattctgcactcaagtcaaggccaataacatgtccttcactgtcacaagttacaccactccagttgcagcatgcaatgctttg |
5859119 |
T |
|
| Q |
773 |
attccaca |
780 |
Q |
| |
|
|||||||| |
|
|
| T |
5859120 |
attccaca |
5859127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 476 - 803
Target Start/End: Original strand, 3749711 - 3750038
Alignment:
| Q |
476 |
agagagatcaagagtaaccaacctcgtgagctgggaaatctctattggaatctgccccacaaattcattatatgacaaatcaagataagttaacttcacc |
575 |
Q |
| |
|
||||||||||||| |||||||||| || ||||| |||||||| || ||||||||||| ||||| | | |||||||| ||||| || ||||| || |
|
|
| T |
3749711 |
agagagatcaagaataaccaaccttgtaagctgcgaaatctcaatcggaatctgccctacaaagctagcttgtgacaaattcagatatgtcaacttatcc |
3749810 |
T |
|
| Q |
576 |
aacttgttgaatgctgatggaatggaagaatttaaataattatcagccaagttcagtttcttgagatgtaggagattgaaaagactacttgattcgtcaa |
675 |
Q |
| |
|
|||||| ||||| |||||||||| |||||| |||| || | |||||||| | ||| | ||||||| | ||| |||||||||||||||| |||| || |
|
|
| T |
3749811 |
aacttgatgaatcttgatggaatgtgagaattgaaatggttgtatgccaagtttaatttttggagatgttgaagactgaaaagactacttgaatcgttaa |
3749910 |
T |
|
| Q |
676 |
ttccaccagaaatagattctccactcaggtcaaggccaataatatatccctcgttgtcacaagtaacgccactccaattgcagcaagcagtgcttttatt |
775 |
Q |
| |
|
||||||| || ||| ||||||| |||||||| |||| || ||| || |||| || ||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
3749911 |
atccaccatcgatcttttcgtcactcagatcaaggccgataacatgtccatcattgttgcatgtaacaccactccaattgcagcaagcaatgcttttatt |
3750010 |
T |
|
| Q |
776 |
ccacaatattagttttgtggaattttca |
803 |
Q |
| |
|
||||||| |||||| |||||| ||||| |
|
|
| T |
3750011 |
ccacaattctagtttggtggaactttca |
3750038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 483 - 738
Target Start/End: Complemental strand, 5582768 - 5582513
Alignment:
| Q |
483 |
tcaagagtaaccaacctcgtgagctgggaaatctctattggaatctgccccacaaattcattatatgacaaatcaagataagttaacttcaccaacttgt |
582 |
Q |
| |
|
||||||||||||||||| || ||||| ||||||||||| ||||| ||||||||||| | | ||||||||||| | |||| | ||| |||||||||||| |
|
|
| T |
5582768 |
tcaagagtaaccaaccttgtaagctgagaaatctctataggaatttgccccacaaagttagcatatgacaaattcaaataactcaacatcaccaacttgt |
5582669 |
T |
|
| Q |
583 |
tgaatgctgatggaatggaagaatttaaataattatcagccaagttcagtttcttgagatgtaggagattgaaaagactacttgattcgtcaattccacc |
682 |
Q |
| |
|
||||| ||||||||||| |||||| |||| ||| |||||||||||| ||| | |||||| | ||| | |||||||| |||| | |||| |||||| |
|
|
| T |
5582668 |
tgaatcctgatggaatgacagaattgaaattgttagcagccaagttcaatttttgaagatgttgaagactaaaaagactgcttgcattatcaaatccacc |
5582569 |
T |
|
| Q |
683 |
agaaatagattctccactcaggtcaaggccaataatatatccctcgttgtcacaag |
738 |
Q |
| |
|
||| || |||||| ||||||| ||||| |||| || | |||||| | ||||||||| |
|
|
| T |
5582568 |
agagattgattcttcactcagatcaagaccaacaacaaatcccttgctgtcacaag |
5582513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 473 - 738
Target Start/End: Complemental strand, 5538711 - 5538446
Alignment:
| Q |
473 |
agaagagagatcaagagtaaccaacctcgtgagctgggaaatctctattggaatctgccccacaaattcattatatgacaaatcaagataagttaacttc |
572 |
Q |
| |
|
|||||||| ||| ||||| |||||||| || ||||| |||||||||| ||||||||||||||||| | | ||||||||||| |||||| | ||| || |
|
|
| T |
5538711 |
agaagagatatctagagttaccaaccttgtaagctgagaaatctctaaaggaatctgccccacaaagttagcatatgacaaattcagataactcaacatc |
5538612 |
T |
|
| Q |
573 |
accaacttgttgaatgctgatggaatggaagaatttaaataattatcagccaagttcagtttcttgagatgtaggagattgaaaagactacttgattcgt |
672 |
Q |
| |
|
||||||||||||||| ||| |||||| | |||| | |||| ||| |||||||||||| ||||| |||| | | ||| | ||||||||||||| | | |
|
|
| T |
5538611 |
accaacttgttgaatcctggtggaatagcagaactgaaattgttagcagccaagttcaatttctgaagattttgaagactaaaaagactacttgtattat |
5538512 |
T |
|
| Q |
673 |
caattccaccagaaatagattctccactcaggtcaaggccaataatatatccctcgttgtcacaag |
738 |
Q |
| |
|
||| |||||||| || |||||| ||||||| ||||| ||||||| | ||||| |||||||||| |
|
|
| T |
5538511 |
caaatccaccagtgattgattcttcactcagatcaagaccaataacaaatcccctattgtcacaag |
5538446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 558 - 805
Target Start/End: Complemental strand, 5852372 - 5852125
Alignment:
| Q |
558 |
agataagttaacttcaccaacttgttgaatgctgatggaatggaagaatttaaataa-ttatcagccaagttcagtttcttgagatgtaggagattgaaa |
656 |
Q |
| |
|
|||||| | ||| ||||||||||||||||| | ||||||||| || || ||| || |||| |||||| |||||||||| ||||||| |||| ||||| |
|
|
| T |
5852372 |
agataattcaacatcaccaacttgttgaatcccgatggaatgacagt-ttcaaacaagttataagccaaattcagtttctggagatgttcgagactgaaa |
5852274 |
T |
|
| Q |
657 |
agactacttgattcgtcaattccaccagaaatagattctccactcaggtcaaggccaataatatatccctcgttgtcacaagtaacgccactccaattgc |
756 |
Q |
| |
|
||||||||||| | |||| ||| |||| ||| |||| |||||| |||||||||||| | | ||| || |||||||||| || |||||||||| || |
|
|
| T |
5852273 |
agactacttgaattatcaaaaccatcagagatatcttcttcactcaagtcaaggccaatcacttgtccttcactgtcacaagttacaccactccaatcgc |
5852174 |
T |
|
| Q |
757 |
agcaagcagtgcttttattccacaatattagttttgtggaattttcagg |
805 |
Q |
| |
|
|||||||| || |||||||||| ||| ||||||| |||||| ||||||| |
|
|
| T |
5852173 |
agcaagcaatgattttattccagaattttagtttggtggaaatttcagg |
5852125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #22
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 203 - 327
Target Start/End: Complemental strand, 5538996 - 5538872
Alignment:
| Q |
203 |
aaatgtttgtggcactggggatgaaaaattgttctcaccaagaataatgactgataggttctctagttttgaaagggaagaagcaagaggtcctgataga |
302 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| || | |||||||||| ||||| ||||||||| |||| || || || |||||||||||| || | |
|
|
| T |
5538996 |
aaatgtttcaggcactggggaagaaaaattgtttccatcgagaataatgatcgatagattctctagtcttgacagagatgattcaagaggtcctgttaaa |
5538897 |
T |
|
| Q |
303 |
ttacagtttgacatgctcagttctt |
327 |
Q |
| |
|
|||||||| |||||| ||||||||| |
|
|
| T |
5538896 |
ttacagttagacatggtcagttctt |
5538872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #23
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 203 - 402
Target Start/End: Original strand, 5559480 - 5559679
Alignment:
| Q |
203 |
aaatgtttgtggcactggggatgaaaaattgttctcaccaagaataatgactgataggttctctagttttgaaagggaagaagcaagaggtcctgataga |
302 |
Q |
| |
|
|||||||| ||||| ||||| ||||||||||| || |||||||||||| |||| |||| |||| |||| || || ||| |||| ||||||| || | |
|
|
| T |
5559480 |
aaatgtttcaggcaccggggaagaaaaattgtttccatcaagaataatgatcgataaattctttagtcttgacagagatgaatcaaggggtcctgttaaa |
5559579 |
T |
|
| Q |
303 |
ttacagtttgacatgctcagttcttgtaggttgctcaaaggcaacaaagcattgatccattcatgtccctgagatgttatacttataccatctagataca |
402 |
Q |
| |
|
|| ||||| |||||| ||||||||| ||| | ||| ||||||||||||||| |||||||||| || | | ||||||| ||| |||||| ||||||| |
|
|
| T |
5559580 |
ttgcagttagacatggtcagttcttctagaccacgcaacggcaacaaagcattgctccattcatgcccttttgctgttataattacaccatccagataca |
5559679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 699 - 779
Target Start/End: Original strand, 5565545 - 5565625
Alignment:
| Q |
699 |
ctcaggtcaaggccaataatatatccctcgttgtcacaagtaacgccactccaattgcagcaagcagtgcttttattccac |
779 |
Q |
| |
|
|||||||||||||| |||| | |||||||| ||||| || || ||||||||||||||||||| | |||||| ||||||| |
|
|
| T |
5565545 |
ctcaggtcaaggcctataacttgcccctcgttatcacaggttacaccactccaattgcagcaaggaatgctttgattccac |
5565625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 7e-42; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 476 - 815
Target Start/End: Original strand, 1486008 - 1486347
Alignment:
| Q |
476 |
agagagatcaagagtaaccaacctcgtgagctgggaaatctctattggaatctgccccacaaattcattatatgacaaatcaagataagttaacttcacc |
575 |
Q |
| |
|
||||| ||||||||||||||| | || || || ||||||||||| ||||||| ||| ||||| | || |||||||| | |||| | ||| ||||| |
|
|
| T |
1486008 |
agagaaatcaagagtaaccaaatttgtaagttgtgaaatctctataggaatctcccctacaaagctagcatgtgacaaattcaaataattcaacatcacc |
1486107 |
T |
|
| Q |
576 |
aacttgttgaatgctgatggaatggaagaatttaaataattatcagccaagttcagtttcttgagatgtaggagattgaaaagactacttgattcgtcaa |
675 |
Q |
| |
|
|| ||||||||| ||||||| ||| |||||| || || ||||| ||||| ||| ||| ||||||| ||||| | |||||||||||||| | || || |
|
|
| T |
1486108 |
aatttgttgaatcctgatgggatgagagaattgaatctgttttcagctaagttgagtctctcgagatgttggagactaaaaagactacttgaattgttaa |
1486207 |
T |
|
| Q |
676 |
ttccaccagaaatagattctccactcaggtcaaggccaataatatatccctcgttgtcacaagtaacgccactccaattgcagcaagcagtgcttttatt |
775 |
Q |
| |
|
|||||||| || |||||| |||| ||||||||| |||||| || |||||| |||||||||||||| ||||||||||||||||||| |||| ||||||| |
|
|
| T |
1486208 |
atccaccagtgattgattcttcactaaggtcaaggtcaataacatgtccctcattgtcacaagtaacaccactccaattgcagcaagtagtgtttttatt |
1486307 |
T |
|
| Q |
776 |
ccacaatattagttttgtggaattttcaggatgaaatgtg |
815 |
Q |
| |
|
||| ||| ||||||| |||||| |||| ||| ||||||| |
|
|
| T |
1486308 |
ccataattttagtttggtggaaaattcatgatcaaatgtg |
1486347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 754 - 815
Target Start/End: Original strand, 23268459 - 23268520
Alignment:
| Q |
754 |
tgcagcaagcagtgcttttattccacaatattagttttgtggaattttcaggatgaaatgtg |
815 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23268459 |
tgcagcaagcagtgcttttattccacaatattagttttgtggaattttcaggatgaaatgtg |
23268520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 181 - 307
Target Start/End: Original strand, 1485703 - 1485829
Alignment:
| Q |
181 |
tggttaggtttttaaaattagcaaatgtttgtggcactggggatgaaaaattgttctcaccaagaataatgactgataggttctctagttttgaaaggga |
280 |
Q |
| |
|
|||| |||||||||||||| | |||||||| ||| | ||| ||||||| |||||||| | |||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
1485703 |
tggtcaggtttttaaaattggtaaatgtttctggaattggcgatgaaagattgttcttatcaagaataatgatggttaggttctctagttttgaaaggga |
1485802 |
T |
|
| Q |
281 |
agaagcaagaggtcctgatagattaca |
307 |
Q |
| |
|
||| ||| |||||||||||| |||| |
|
|
| T |
1485803 |
ggaatcaacgggtcctgatagactaca |
1485829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0454 (Bit Score: 71; Significance: 1e-31; HSPs: 2)
Name: scaffold0454
Description:
Target: scaffold0454; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 476 - 815
Target Start/End: Original strand, 1191 - 1533
Alignment:
| Q |
476 |
agagagatcaagagtaaccaacctcgtgagctgggaaatctctattggaatctgccccacaaattcattatatgacaaatcaagataagtt-aacttcac |
574 |
Q |
| |
|
||||| ||||||||||||||| | || || || ||||||||||| ||||||| ||| ||||| | || |||||||| | |||| || ||| |||| |
|
|
| T |
1191 |
agagaaatcaagagtaaccaaatttgtaagttgtgaaatctctataggaatctcccctacaaagctagcatgtgacaaattcaaataaattcaacatcac |
1290 |
T |
|
| Q |
575 |
caacttgttgaatgctgatggaatggaagaatttaaataattatcagccaagttcagtttcttgagatgtaggagattgaaaa-gactacttgattcgtc |
673 |
Q |
| |
|
||| ||||||||| ||||||| ||| |||||| || || ||||| ||||| ||| ||| ||||||| ||||| | |||| |||||||||| | || |
|
|
| T |
1291 |
caatttgttgaatcctgatgggatgagagaattgaatctgttttcagctaagttgagtctctcgagatgttggagactaaaaaagactacttgaattgtt |
1390 |
T |
|
| Q |
674 |
aattccaccagaaatagattctccactcaggtcaaggccaataatatatccctcgttgtcacaagtaacgccactccaattgcagcaagcag-tgctttt |
772 |
Q |
| |
|
|| |||||||| || |||||| |||| ||||||||| |||||| || |||||| |||||||||||||| ||||||||||||||||||| || || |||| |
|
|
| T |
1391 |
aaatccaccagtgattgattcttcactaaggtcaaggtcaataacatgtccctcattgtcacaagtaacaccactccaattgcagcaagtagttgttttt |
1490 |
T |
|
| Q |
773 |
attccacaatattagttttgtggaattttcaggatgaaatgtg |
815 |
Q |
| |
|
|||||| ||| ||||||| |||||| |||| ||| ||||||| |
|
|
| T |
1491 |
attccataattttagtttggtggaaaattcatgatcaaatgtg |
1533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0454; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 181 - 307
Target Start/End: Original strand, 884 - 1011
Alignment:
| Q |
181 |
tggttaggtttttaaaattagc-aaatgtttgtggcactggggatgaaaaattgttctcaccaagaataatgactgataggttctctagttttgaaaggg |
279 |
Q |
| |
|
|||| |||||||||||||||| |||||||| ||| | ||| ||||||| |||||||| | |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
884 |
tggtcaggtttttaaaattaggtaaatgtttctggaattggcgatgaaagattgttcttatcaagaataatgatggttaggttctctagttttgaaaggg |
983 |
T |
|
| Q |
280 |
aagaagcaagaggtcctgatagattaca |
307 |
Q |
| |
|
| ||| ||| |||||||||||| |||| |
|
|
| T |
984 |
aggaatcaacgggtcctgatagactaca |
1011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University