View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4306_high_12 (Length: 374)
Name: NF4306_high_12
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4306_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 16 - 364
Target Start/End: Original strand, 40147569 - 40147917
Alignment:
| Q |
16 |
tcacttgacatgtaccaaacccctacaggaagaataacttcattcttttagtttggaaacctgcaggttggtaagcaagcagttttggcaattcttcttg |
115 |
Q |
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| T |
40147569 |
tcacttgacatgtaccaagcccctacaggaagaataacttcattcttttagtttggaaacctgcaggttggtaagcaagcagttttggcaattcttcttg |
40147668 |
T |
|
| Q |
116 |
catcatttgctgggtttggtgttatgatgagcggaagttcagttattgcggaaatactcaaatggagaagaagatggctggcttactcagagcagcagcg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40147669 |
catcatttgctgggtttggtgttatgatgagcggaagttcagttattgcggaaatactcaaatggagaagaagatggctggcttactcagagcagcagcg |
40147768 |
T |
|
| Q |
216 |
tcgtgactctcaagtgatgacacaagaaggactatatcctcaagctgtaatcaccccacagtcaagtcttcccaatcacaaccaaaccacagtgcaactg |
315 |
Q |
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| T |
40147769 |
tcgtgactctcaagtgatgacacaagaaggactatatcctcaaggtgtaatcaccccacagtcaagtcttcccaatcacaaccaaaccacagtgcaactg |
40147868 |
T |
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| Q |
316 |
caaaatcaacagaattcaagttcataactgaattgaagtctatattcat |
364 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40147869 |
caaaatcaacagaattcaagtttataactgaattgaagtctatattcat |
40147917 |
T |
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