View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4306_high_15 (Length: 340)
Name: NF4306_high_15
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4306_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 330
Target Start/End: Complemental strand, 12066541 - 12066229
Alignment:
| Q |
18 |
catcttaattaatgtgtcctttagaaacttccaattgaaatatttccatcacaatacaataatatgtctatagcactgtacggtatggccactccttaga |
117 |
Q |
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| T |
12066541 |
catcttaattaatgtgtcctttagaaacttccaactgaaatatttccatcacaatacaataatatgtctatagcactgtacggtatggccactccttaga |
12066442 |
T |
|
| Q |
118 |
ttaatgcaccaataattctatttagtttcacaccttttgattggttaccgtacatttcactatattcccatcacaatccaataattttatttctcttata |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12066441 |
ttaatgcaccaataattctatttagtttcacaccttttgattggttaccgtacatttcactatattcccatcacaatccaataattttatttctcttata |
12066342 |
T |
|
| Q |
218 |
aaacaccaaccattggctattctcaattcattcataaacttcattcataacattcttacttatctaccnnnnnnnnttcttagtttgaagaaaagaagga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
12066341 |
aaacaccaaccattggctattctcaattcattcataaacttcattcataacattcttagttatctaccaaaaataattcttagtttgaagaaaagaagga |
12066242 |
T |
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| Q |
318 |
agaaatacttcat |
330 |
Q |
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||||||||||||| |
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| T |
12066241 |
agaaatacttcat |
12066229 |
T |
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