View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4306_high_17 (Length: 327)
Name: NF4306_high_17
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4306_high_17 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 16 - 327
Target Start/End: Original strand, 26438864 - 26439181
Alignment:
| Q |
16 |
ttatgttctataaataatatatttaaggtgtgacnnnnnnnn-gtgtgaatagagtatccttgcgtaaaactacagagactaatcattatgttagaaaag |
114 |
Q |
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| T |
26438864 |
ttatgttctatgaataatatatttaaggtgtgactttttttttgtgtgaatagagtatccttgcgcaaaactactgagactaatcattatgttagaaagg |
26438963 |
T |
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| Q |
115 |
attgtatttggtagtaaaatccttactctaaatatttaacattccagcattttaatggttgaatttgaactaaatatctttgattacactagaagagata |
214 |
Q |
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| T |
26438964 |
attgtatttggtagtaaaacccttactctaaatatttaacattccagcattttaatggttgaatttgaactaaatatctttgattacactataagagata |
26439063 |
T |
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| Q |
215 |
tcttaatatctcatctaaatggtctagagtacttacggtgtatctttggtttgtagaaaattaatgattgacaatatatata-----acttgtatattat |
309 |
Q |
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| T |
26439064 |
tcttaatatctcatctaaatgctctagagtacttacagtgtatctttggtttgtagaaaattaatgattgataatatatataactttacttgtatagtat |
26439163 |
T |
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| Q |
310 |
ttgatttaaaaattaatc |
327 |
Q |
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| T |
26439164 |
ttgatttaaaaattaatc |
26439181 |
T |
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