View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4306_high_19 (Length: 315)

Name: NF4306_high_19
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4306_high_19
NF4306_high_19
[»] chr8 (2 HSPs)
chr8 (1-303)||(5830322-5830624)
chr8 (3-32)||(26886069-26886098)
[»] chr4 (4 HSPs)
chr4 (190-230)||(51545589-51545629)
chr4 (1-32)||(33024161-33024192)
chr4 (187-224)||(17344232-17344269)
chr4 (2-31)||(36490574-36490603)
[»] chr6 (2 HSPs)
chr6 (1-44)||(2726442-2726485)
chr6 (3-31)||(16890475-16890503)
[»] chr5 (3 HSPs)
chr5 (173-224)||(39290834-39290885)
chr5 (191-231)||(3575149-3575189)
chr5 (1-45)||(14124293-14124337)
[»] chr3 (3 HSPs)
chr3 (1-44)||(5293670-5293713)
chr3 (3-43)||(19883081-19883121)
chr3 (3-31)||(54018433-54018461)
[»] chr2 (3 HSPs)
chr2 (2-37)||(42365186-42365221)
chr2 (193-231)||(5610090-5610128)
chr2 (3-43)||(40874099-40874139)
[»] chr1 (3 HSPs)
chr1 (1-31)||(3248783-3248813)
chr1 (1-43)||(28679676-28679718)
chr1 (187-224)||(12043677-12043714)
[»] chr7 (2 HSPs)
chr7 (2-31)||(21928144-21928173)
chr7 (3-39)||(44770170-44770206)


Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 5830322 - 5830624
Alignment:
Q  1 tattatgcattgtccataccaactaagttaaatttacgatgactactcacatgaatctcacatgatatgagtcatctcactttttatgtcatatattaat 100  Q
    |||||| |||||| |||||||||||| |||| || |||||||||||||| ||||||||||||||||| ||||| || ||||||||||| |||||||||||    
T  5830322 tattatacattgttcataccaactaaattaagttcacgatgactactcatatgaatctcacatgataagagtcctcacactttttatgccatatattaat 5830421  T
Q  101 cttatactccctcaagtcatgtttatatatataagaaaaagtgacgccaacaaaattgatatacaatttgctttaaattttttgttagatacattaactt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  5830422 cttatactccctcaagtcatgtttatatatataagaaaaagtgaggccaacaaaattgatatataatttgctttaaattttttgctagatacattaactt 5830521  T
Q  201 ttgttgatttaactttttcttatatataagactgcattgagcaattgagaacgtgtgcaaagacacatggagaatataagacgatagttatgatttatag 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  5830522 ttgttgatttaactttttcttatatataagactgcattgagcaattgagaacgtgtgcaaagacacatggagaatatatgacgttagttatgatttatag 5830621  T
Q  301 tat 303  Q
    |||    
T  5830622 tat 5830624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 32
Target Start/End: Original strand, 26886069 - 26886098
Alignment:
Q  3 ttatgcattgtccataccaactaagttaaa 32  Q
    ||||||||||||||||||||||||||||||    
T  26886069 ttatgcattgtccataccaactaagttaaa 26886098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 51545589 - 51545629
Alignment:
Q  190 tacattaacttttgttgatttaactttttcttatatataag 230  Q
    ||||||||||||||||||| ||||||| |||||||||||||    
T  51545589 tacattaacttttgttgatctaactttatcttatatataag 51545629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 33024192 - 33024161
Alignment:
Q  1 tattatgcattgtccataccaactaagttaaa 32  Q
    ||||||||||||||||||||||||||||||||    
T  33024192 tattatgcattgtccataccaactaagttaaa 33024161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 17344269 - 17344232
Alignment:
Q  187 agatacattaacttttgttgatttaactttttcttata 224  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  17344269 agatacatcaacttttgttgatttaactttctcttata 17344232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 31
Target Start/End: Complemental strand, 36490603 - 36490574
Alignment:
Q  2 attatgcattgtccataccaactaagttaa 31  Q
    ||||||||||||||||||||||||||||||    
T  36490603 attatgcattgtccataccaactaagttaa 36490574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 2726442 - 2726485
Alignment:
Q  1 tattatgcattgtccataccaactaagttaaatttacgatgact 44  Q
    |||||||||||||||||||||||| |||||| ||||||| ||||    
T  2726442 tattatgcattgtccataccaactgagttaagtttacgaggact 2726485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 16890475 - 16890503
Alignment:
Q  3 ttatgcattgtccataccaactaagttaa 31  Q
    |||||||||||||||||||||||||||||    
T  16890475 ttatgcattgtccataccaactaagttaa 16890503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 39290834 - 39290885
Alignment:
Q  173 ttaaattttttgttagatacattaacttttgttgatttaactttttcttata 224  Q
    ||||||||||  |||||||||||||||||||||||||  ||||| |||||||    
T  39290834 ttaaatttttaattagatacattaacttttgttgattcgactttctcttata 39290885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 3575189 - 3575149
Alignment:
Q  191 acattaacttttgttgatttaactttttcttatatataaga 231  Q
    |||| |||||||||||| | |||||||||||||||||||||    
T  3575189 acatcaacttttgttgactcaactttttcttatatataaga 3575149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 14124337 - 14124293
Alignment:
Q  1 tattatgcattgtccataccaactaagttaaatttacgatgacta 45  Q
    ||||||||||||||| ||||||||||||||| || |||| |||||    
T  14124337 tattatgcattgtccttaccaactaagttaagttcacgaagacta 14124293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 5293670 - 5293713
Alignment:
Q  1 tattatgcattgtccataccaactaagttaaatttacgatgact 44  Q
    |||||||||||||| |||||||||||||||| ||||||| ||||    
T  5293670 tattatgcattgtcaataccaactaagttaagtttacgaggact 5293713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 19883121 - 19883081
Alignment:
Q  3 ttatgcattgtccataccaactaagttaaatttacgatgac 43  Q
    ||||||||| |||||||||||||||||||| | ||||||||    
T  19883121 ttatgcattatccataccaactaagttaaactcacgatgac 19883081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 54018433 - 54018461
Alignment:
Q  3 ttatgcattgtccataccaactaagttaa 31  Q
    |||||||||||||||||||||||||||||    
T  54018433 ttatgcattgtccataccaactaagttaa 54018461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 37
Target Start/End: Original strand, 42365186 - 42365221
Alignment:
Q  2 attatgcattgtccataccaactaagttaaatttac 37  Q
    ||||||||||||||||||||||||| ||||||||||    
T  42365186 attatgcattgtccataccaactaaattaaatttac 42365221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 231
Target Start/End: Original strand, 5610090 - 5610128
Alignment:
Q  193 attaacttttgttgatttaactttttcttatatataaga 231  Q
    |||||||||||||||| |||||||||||||| |||||||    
T  5610090 attaacttttgttgatataactttttcttatttataaga 5610128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 40874099 - 40874139
Alignment:
Q  3 ttatgcattgtccataccaactaagttaaatttacgatgac 43  Q
    |||||||||||||||| ||||| ||||||||| ||||||||    
T  40874099 ttatgcattgtccatatcaactgagttaaattcacgatgac 40874139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 3248813 - 3248783
Alignment:
Q  1 tattatgcattgtccataccaactaagttaa 31  Q
    |||||||||||||||||||||||||||||||    
T  3248813 tattatgcattgtccataccaactaagttaa 3248783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 28679718 - 28679676
Alignment:
Q  1 tattatgcattgtccataccaactaagttaaatttacgatgac 43  Q
    ||||||||||||||  ||||||||||||||||||||| |||||    
T  28679718 tattatgcattgtctttaccaactaagttaaatttacaatgac 28679676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 12043677 - 12043714
Alignment:
Q  187 agatacattaacttttgttgatttaactttttcttata 224  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  12043677 agatacattaatttttgttgatttaaatttttcttata 12043714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 31
Target Start/End: Original strand, 21928144 - 21928173
Alignment:
Q  2 attatgcattgtccataccaactaagttaa 31  Q
    ||||||||||||||||||||||||||||||    
T  21928144 attatgcattgtccataccaactaagttaa 21928173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 44770170 - 44770206
Alignment:
Q  3 ttatgcattgtccataccaactaagttaaatttacga 39  Q
    |||||||||||||||||||||| |||||| |||||||    
T  44770170 ttatgcattgtccataccaactgagttaagtttacga 44770206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University