View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4306_high_25 (Length: 277)

Name: NF4306_high_25
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4306_high_25
NF4306_high_25
[»] chr8 (27 HSPs)
chr8 (19-160)||(38296684-38296825)
chr8 (194-267)||(2540070-2540143)
chr8 (194-267)||(11174362-11174435)
chr8 (194-267)||(40058442-40058515)
chr8 (194-267)||(7146978-7147051)
chr8 (194-267)||(37345636-37345709)
chr8 (194-264)||(3585516-3585586)
chr8 (194-264)||(11646467-11646537)
chr8 (194-267)||(30999662-30999733)
chr8 (194-267)||(43275538-43275609)
chr8 (194-264)||(36068145-36068215)
chr8 (194-267)||(40918870-40918941)
chr8 (194-266)||(13881094-13881167)
chr8 (194-267)||(20546428-20546499)
chr8 (195-267)||(27035063-27035134)
chr8 (194-266)||(28326797-28326866)
chr8 (154-194)||(45278717-45278757)
chr8 (155-194)||(27034995-27035034)
chr8 (155-193)||(36068078-36068116)
chr8 (156-194)||(43275637-43275675)
chr8 (157-194)||(3585451-3585488)
chr8 (157-190)||(7146913-7146946)
chr8 (157-194)||(8697914-8697951)
chr8 (197-266)||(35866682-35866751)
chr8 (226-267)||(37510363-37510404)
chr8 (157-194)||(40918969-40919006)
chr8 (157-194)||(41307977-41308014)
[»] scaffold1431 (1 HSPs)
scaffold1431 (194-267)||(38-111)
[»] chr7 (20 HSPs)
chr7 (194-267)||(10981573-10981646)
chr7 (194-267)||(40349025-40349098)
chr7 (194-267)||(27813876-27813949)
chr7 (194-267)||(36453263-36453336)
chr7 (194-267)||(47110516-47110587)
chr7 (194-267)||(25614492-25614563)
chr7 (194-261)||(3091582-3091649)
chr7 (194-261)||(7743542-7743608)
chr7 (155-194)||(25614591-25614630)
chr7 (194-258)||(16360449-16360511)
chr7 (194-266)||(16662161-16662231)
chr7 (194-266)||(17636521-17636591)
chr7 (194-267)||(27942178-27942251)
chr7 (157-194)||(40348960-40348997)
chr7 (103-157)||(43002341-43002396)
chr7 (194-267)||(3498893-3498966)
chr7 (157-194)||(10981508-10981545)
chr7 (157-194)||(25060149-25060186)
chr7 (195-255)||(27021566-27021624)
chr7 (157-194)||(27813811-27813848)
[»] chr6 (17 HSPs)
chr6 (194-267)||(1605644-1605717)
chr6 (194-267)||(8626547-8626620)
chr6 (194-267)||(29260257-29260330)
chr6 (194-267)||(30734622-30734695)
chr6 (194-267)||(13757273-13757346)
chr6 (194-267)||(7761366-7761437)
chr6 (194-267)||(4129492-4129565)
chr6 (194-263)||(31559879-31559948)
chr6 (195-267)||(17942511-17942583)
chr6 (196-267)||(8235691-8235762)
chr6 (194-267)||(15064833-15064906)
chr6 (194-266)||(21277574-21277645)
chr6 (194-244)||(30734772-30734820)
chr6 (194-266)||(14287054-14287125)
chr6 (157-194)||(1605579-1605616)
chr6 (157-194)||(7761301-7761338)
chr6 (157-194)||(29260192-29260229)
[»] chr5 (19 HSPs)
chr5 (194-267)||(10285196-10285269)
chr5 (194-267)||(12806992-12807065)
chr5 (194-267)||(25773714-25773787)
chr5 (194-267)||(40886749-40886822)
chr5 (194-267)||(30720631-30720704)
chr5 (194-267)||(36561238-36561311)
chr5 (194-267)||(7277561-7277634)
chr5 (194-267)||(25683367-25683440)
chr5 (194-267)||(37900763-37900836)
chr5 (194-254)||(23098386-23098446)
chr5 (194-266)||(30403101-30403174)
chr5 (154-194)||(30720732-30720772)
chr5 (152-194)||(15305228-15305270)
chr5 (157-194)||(12807093-12807130)
chr5 (157-194)||(15304822-15304859)
chr5 (157-194)||(25773649-25773686)
chr5 (226-266)||(734478-734518)
chr5 (226-266)||(11319656-11319696)
chr5 (226-266)||(39070980-39071020)
[»] chr4 (30 HSPs)
chr4 (194-267)||(12071626-12071699)
chr4 (194-267)||(24706386-24706459)
chr4 (194-267)||(25704716-25704789)
chr4 (194-267)||(34324721-34324794)
chr4 (194-267)||(14261109-14261182)
chr4 (194-263)||(21310490-21310559)
chr4 (194-267)||(22321406-22321479)
chr4 (194-267)||(40122624-40122697)
chr4 (194-267)||(44568902-44568975)
chr4 (194-267)||(50767929-50768002)
chr4 (194-267)||(21661674-21661747)
chr4 (194-267)||(21670438-21670511)
chr4 (194-267)||(20249152-20249224)
chr4 (194-266)||(20714488-20714560)
chr4 (194-249)||(1988100-1988155)
chr4 (201-267)||(21064834-21064898)
chr4 (195-266)||(32543547-32543617)
chr4 (194-252)||(34284171-34284229)
chr4 (157-194)||(22321507-22321544)
chr4 (194-261)||(6129093-6129160)
chr4 (157-194)||(12071561-12071598)
chr4 (157-194)||(14261044-14261081)
chr4 (197-266)||(18507404-18507472)
chr4 (157-194)||(21310425-21310462)
chr4 (157-194)||(24706487-24706524)
chr4 (157-194)||(25704651-25704688)
chr4 (157-194)||(34324823-34324860)
chr4 (157-194)||(40122725-40122762)
chr4 (157-190)||(44568837-44568870)
chr4 (194-267)||(31892303-31892372)
[»] chr3 (20 HSPs)
chr3 (194-267)||(13364908-13364981)
chr3 (194-267)||(23088070-23088143)
chr3 (194-267)||(46694249-46694322)
chr3 (194-267)||(36881347-36881418)
chr3 (194-267)||(198920-198993)
chr3 (194-267)||(3383141-3383214)
chr3 (194-264)||(19241810-19241880)
chr3 (194-263)||(29375203-29375272)
chr3 (194-267)||(43750202-43750275)
chr3 (154-194)||(198852-198892)
chr3 (194-266)||(19897067-19897139)
chr3 (150-194)||(38805238-38805282)
chr3 (194-233)||(32835129-32835168)
chr3 (194-261)||(37781002-37781069)
chr3 (156-194)||(36881281-36881319)
chr3 (157-194)||(3383076-3383113)
chr3 (157-194)||(12094582-12094619)
chr3 (157-194)||(29375138-29375175)
chr3 (223-267)||(27707127-27707171)
chr3 (154-194)||(46694350-46694390)
[»] chr2 (18 HSPs)
chr2 (194-267)||(3518973-3519046)
chr2 (194-267)||(39938235-39938308)
chr2 (194-267)||(1102568-1102641)
chr2 (194-267)||(23366854-23366927)
chr2 (194-267)||(1646354-1646425)
chr2 (194-256)||(37673887-37673949)
chr2 (206-267)||(22388274-22388335)
chr2 (194-267)||(12969878-12969951)
chr2 (194-251)||(35179090-35179147)
chr2 (157-189)||(34222058-34222090)
chr2 (157-194)||(1102503-1102540)
chr2 (157-194)||(3518908-3518945)
chr2 (157-194)||(12969979-12970016)
chr2 (194-266)||(14779844-14779914)
chr2 (157-194)||(34224394-34224431)
chr2 (226-266)||(4917859-4917899)
chr2 (158-194)||(23366790-23366826)
chr2 (226-266)||(24777764-24777804)
[»] chr1 (28 HSPs)
chr1 (194-267)||(23045418-23045491)
chr1 (194-267)||(40783796-40783869)
chr1 (194-267)||(321691-321764)
chr1 (194-264)||(284398-284468)
chr1 (194-267)||(47037991-47038062)
chr1 (194-267)||(23526305-23526378)
chr1 (194-267)||(46771702-46771775)
chr1 (194-267)||(24772044-24772117)
chr1 (194-267)||(33082810-33082883)
chr1 (194-267)||(27211103-27211176)
chr1 (194-267)||(1749372-1749445)
chr1 (194-267)||(52037261-52037332)
chr1 (154-194)||(284330-284370)
chr1 (194-257)||(1837978-1838039)
chr1 (154-194)||(23045519-23045559)
chr1 (226-261)||(33711192-33711227)
chr1 (155-194)||(41959076-41959115)
chr1 (200-266)||(31003926-31003992)
chr1 (157-194)||(3943060-3943097)
chr1 (194-263)||(7765078-7765147)
chr1 (157-194)||(9588670-9588707)
chr1 (157-194)||(13985007-13985044)
chr1 (197-266)||(31061594-31061662)
chr1 (157-194)||(44227848-44227885)
chr1 (157-194)||(47038090-47038127)
chr1 (194-266)||(52478033-52478103)
chr1 (226-262)||(2572095-2572131)
chr1 (158-194)||(27211204-27211240)
[»] scaffold1770 (1 HSPs)
scaffold1770 (194-267)||(227-300)
[»] scaffold0054 (1 HSPs)
scaffold0054 (194-267)||(45519-45592)
[»] scaffold0062 (1 HSPs)
scaffold0062 (194-267)||(404-475)
[»] scaffold0056 (1 HSPs)
scaffold0056 (194-266)||(70889-70961)
[»] scaffold0025 (1 HSPs)
scaffold0025 (195-267)||(65302-65375)
[»] scaffold0257 (2 HSPs)
scaffold0257 (157-194)||(23467-23504)
scaffold0257 (154-194)||(23876-23916)


Alignment Details
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 160
Target Start/End: Complemental strand, 38296825 - 38296684
Alignment:
Q  19 aatagggtgtgttgttgtcatggcttttaactacttgtagtgctgccnnnnnnngacagacttctctgtgatggcctgtttttatttctttggtattcta 118  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  38296825 aatagggtgtgttgctgtcatggcttttaactacttgtagtgctgcctttttttgacagacttctctgtgatggcctgtttttatttctttggtattcta 38296726  T
Q  119 ttatttccattttattaggaatggggaaggtaaagtattact 160  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  38296725 ttatttccattttattaggaatggggaaggtaaagtattact 38296684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 2540143 - 2540070
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  2540143 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 2540070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 11174435 - 11174362
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  11174435 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 11174362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 40058515 - 40058442
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  40058515 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 40058442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 7146978 - 7147051
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||    
T  7146978 attttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaatcatttattatttcattttattt 7147051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 37345636 - 37345709
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  37345636 attttgttatttttaatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 37345709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 194 - 264
Target Start/End: Original strand, 3585516 - 3585586
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcatttta 264  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||    
T  3585516 attttgttatttttgatgaaaatatatgtgtgttttctataatacccttaatcatttattatttcatttta 3585586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 194 - 264
Target Start/End: Complemental strand, 11646537 - 11646467
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcatttta 264  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||    
T  11646537 attttgttatttttgatgaaaatatatgtgtgttttctataatacccttaatcatttattatttcatttta 11646467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 30999733 - 30999662
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||    
T  30999733 attttgttatttttgatgaaaatatgtg--tgttttctataatacccttaatcatttattatttcattttattt 30999662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 43275609 - 43275538
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||    
T  43275609 attttgttatttttgatgaaaatatgtg--tgttttctataatacccttaatcatttattatttcattttattt 43275538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 194 - 264
Target Start/End: Original strand, 36068145 - 36068215
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcatttta 264  Q
    |||||||||||||| |||||||||| || ||||||||||||||||||||||| ||| ||||||||||||||    
T  36068145 attttgttatttttaatgaaaatatatgtgtgttttctataatacccttaatcattaattatttcatttta 36068215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 40918941 - 40918870
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||| ||||||| |||||  |||||||||||||||||||||| |||||||||||||||||||||    
T  40918941 attttgttattttttatgaaaacatgtg--tgttttctataatacccttaatcatttattatttcattttattt 40918870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 266
Target Start/End: Complemental strand, 13881167 - 13881094
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgtttt-ctataatacccttaattatttattatttcattttatt 266  Q
    ||||||||||||||||||||| | ||||||| |||| |||||||||||||||| ||||||||||||||| ||||    
T  13881167 attttgttatttttgatgaaattgtgtgcgtttttttctataatacccttaatcatttattatttcattatatt 13881094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 20546499 - 20546428
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    ||||||||||||||||||||| ||||||  |||||| ||| ||||||||||  ||||||||||||||| |||||    
T  20546499 attttgttatttttgatgaaattatgtg--tgttttatatgatacccttaacaatttattatttcattatattt 20546428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 267
Target Start/End: Original strand, 27035063 - 27035134
Alignment:
Q  195 ttttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||| ||||||||||||||| |||||  |||||| |||||||||||||||  ||||||||||||||| |||||    
T  27035063 tttttttatttttgatgaaattatgtctgtgttt-ctataatacccttaaccatttattatttcattctattt 27035134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 266
Target Start/End: Complemental strand, 28326866 - 28326797
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttatt 266  Q
    ||||||||||||||||||||| ||||||    ||||| ||||||| ||||| |||||||||||||||| ||||    
T  28326866 attttgttatttttgatgaaattatgtgt---ttttcaataatactcttaactatttattatttcattctatt 28326797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 45278757 - 45278717
Alignment:
Q  154 tattactccttccgttttaaaatacatgtccattttggaga 194  Q
    ||||||||| ||||||| |||||||||||||||||||||||    
T  45278757 tattactccctccgtttcaaaatacatgtccattttggaga 45278717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 194
Target Start/End: Original strand, 27034995 - 27035034
Alignment:
Q  155 attactccttccgttttaaaatacatgtccattttggaga 194  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  27034995 attactccctccgtttcaaaatacatgtccattttggaga 27035034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 36068078 - 36068116
Alignment:
Q  155 attactccttccgttttaaaatacatgtccattttggag 193  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  36068078 attactccctccgtttcaaaatacatgtccattttggag 36068116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 43275675 - 43275637
Alignment:
Q  156 ttactccttccgttttaaaatacatgtccattttggaga 194  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  43275675 ttactccctccgtttcaaaatacatgtccattttggaga 43275637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 3585451 - 3585488
Alignment:
Q  157 tactccttccgttttaaaatacatgtccattttggaga 194  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  3585451 tactccctccgtttcaaaatacatgtccattttggaga 3585488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 190
Target Start/End: Original strand, 7146913 - 7146946
Alignment:
Q  157 tactccttccgttttaaaatacatgtccattttg 190  Q
    |||||||||||||| |||||||||||||||||||    
T  7146913 tactccttccgtttcaaaatacatgtccattttg 7146946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 194
Target Start/End: Complemental strand, 8697951 - 8697914
Alignment:
Q  157 tactccttccgttttaaaatacatgtccattttggaga 194  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  8697951 tactccctccgtttcaaaatacatgtccattttggaga 8697914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 266
Target Start/End: Original strand, 35866682 - 35866751
Alignment:
Q  197 ttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttatt 266  Q
    ||||||||||| |||||| | | || || |||||||||||||||||||  ||||||||||| ||| ||||    
T  35866682 ttgttatttttcatgaaattctttgtgttttttctataatacccttaaacatttattattttattctatt 35866751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 37510363 - 37510404
Alignment:
Q  226 ttttctataatacccttaattatttattatttcattttattt 267  Q
    ||||| |||||||||||||| ||||| |||||||||||||||    
T  37510363 ttttcaataatacccttaatcatttaatatttcattttattt 37510404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 194
Target Start/End: Complemental strand, 40919006 - 40918969
Alignment:
Q  157 tactccttccgttttaaaatacatgtccattttggaga 194  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  40919006 tactccctccgtttcaaaatacatgtccattttggaga 40918969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 194
Target Start/End: Complemental strand, 41308014 - 41307977
Alignment:
Q  157 tactccttccgttttaaaatacatgtccattttggaga 194  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  41308014 tactccctccgtttcaaaatacatgtccattttggaga 41307977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1431 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold1431
Description:

Target: scaffold1431; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 111 - 38
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  111 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 38  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 10981573 - 10981646
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  10981573 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 10981646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 40349025 - 40349098
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  40349025 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 40349098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 27813876 - 27813949
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||    
T  27813876 attttgttatttttgatgaaaatatgtatgtgttttctataatacccttaatcatttattatttcattttattt 27813949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 36453336 - 36453263
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    ||||| |||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||    
T  36453336 attttattatttttgatgaaaatatgtgtgttttttctataatacccttaatcatttattatttcattttattt 36453263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 47110516 - 47110587
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||| |||||||||    
T  47110516 attttgttatttttgatgaaaatatgtg--tgttttctataatacccttaatcatttattattttattttattt 47110587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 25614563 - 25614492
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    ||||||||||||||||||||||||||||  ||||||||  |||||||||||| |||||||||||||||||||||    
T  25614563 attttgttatttttgatgaaaatatgtg--tgttttctgaaatacccttaatcatttattatttcattttattt 25614492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 261
Target Start/End: Original strand, 3091582 - 3091649
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcatt 261  Q
    ||||||||||||||||||||| | | || || |||||||||||||||||||  |||||||||||||||    
T  3091582 attttgttatttttgatgaaattctttgtgttttttctataatacccttaaccatttattatttcatt 3091649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 261
Target Start/End: Complemental strand, 7743608 - 7743542
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcatt 261  Q
    ||||||||||||||||||||| ||||||  | ||| |||||||||| |||||||||||||||||||||    
T  7743608 attttgttatttttgatgaaattatgtgtttcttt-ctataataccgttaattatttattatttcatt 7743542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 194
Target Start/End: Complemental strand, 25614630 - 25614591
Alignment:
Q  155 attactccttccgttttaaaatacatgtccattttggaga 194  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  25614630 attactccttccgtttcaaaatacatgtccattttggaga 25614591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 258
Target Start/End: Original strand, 16360449 - 16360511
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttc 258  Q
    ||||||||||||||||||||| | ||||  | |||||||||||||||||||  ||||||||||||    
T  16360449 attttgttatttttgatgaaattctgtg--ttttttctataatacccttaaccatttattatttc 16360511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 266
Target Start/End: Original strand, 16662161 - 16662231
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttatt 266  Q
    ||||||||||||||||||||||| |||  || |||| ||||||||||||||  ||||||||||| ||| ||||    
T  16662161 attttgttatttttgatgaaaatttgt--gttttttttataatacccttaaccatttattattttattatatt 16662231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 266
Target Start/End: Original strand, 17636521 - 17636591
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttatt 266  Q
    ||||||||||||||||||||||| |||  || |||| ||||||||||||||  ||||||||||| ||| ||||    
T  17636521 attttgttatttttgatgaaaatttgt--gttttttttataatacccttaaccatttattattttattatatt 17636591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 27942251 - 27942178
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    ||||| |||||||| |||| | |||||| || |||||||||||||| ||||  ||||||||||||||| |||||    
T  27942251 atttttttatttttaatgagattatgtgtgttttttctataatacctttaaccatttattatttcattctattt 27942178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 40348960 - 40348997
Alignment:
Q  157 tactccttccgttttaaaatacatgtccattttggaga 194  Q
    |||||||||||||| |||||||||||||||||||||||    
T  40348960 tactccttccgtttcaaaatacatgtccattttggaga 40348997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 157
Target Start/End: Original strand, 43002341 - 43002396
Alignment:
Q  103 tttctttggtattctattattt-ccattttattaggaatggggaaggtaaagtatt 157  Q
    ||||||||||||||||||| |  |||||||||| ||||||||||||||| ||||||    
T  43002341 tttctttggtattctattagtagccattttatttggaatggggaaggtagagtatt 43002396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 3498966 - 3498893
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||| |||||| | | ||  | |||||||||||||  ||||  |||||||||||||||||||||    
T  3498966 attttgttattttttatgaaattttttgtatcttttctataatacttttaaccatttattatttcattttattt 3498893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 10981508 - 10981545
Alignment:
Q  157 tactccttccgttttaaaatacatgtccattttggaga 194  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  10981508 tactccctccgtttcaaaatacatgtccattttggaga 10981545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 194
Target Start/End: Complemental strand, 25060186 - 25060149
Alignment:
Q  157 tactccttccgttttaaaatacatgtccattttggaga 194  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  25060186 tactccctccgtttcaaaatacatgtccattttggaga 25060149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 27021566 - 27021624
Alignment:
Q  195 ttttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattat 255  Q
    |||||||| ||||||||||| |||||   | |||||||||||| |||||||||||||||||    
T  27021566 ttttgttacttttgatgaaactatgtc--ttttttctataataaccttaattatttattat 27021624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 27813811 - 27813848
Alignment:
Q  157 tactccttccgttttaaaatacatgtccattttggaga 194  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  27813811 tactccctccgtttcaaaatacatgtccattttggaga 27813848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 1605644 - 1605717
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  1605644 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 1605717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 8626547 - 8626620
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  8626547 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 8626620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 29260257 - 29260330
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  29260257 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 29260330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 30734695 - 30734622
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  30734695 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 30734622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 13757273 - 13757346
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||    
T  13757273 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcaattattatttcattttattt 13757346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 7761366 - 7761437
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||    
T  7761366 attttgttatttttgatgaaaatatgtg--tgttttctataatacccttaatcatttattatttcattttattt 7761437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 4129492 - 4129565
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||    
T  4129492 attttgttattttttatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcattttattt 4129565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 194 - 263
Target Start/End: Complemental strand, 31559948 - 31559879
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcatttt 263  Q
    ||||||||||||||||||||||||||||  |||||||| ||||||||||||| |||||||||||||||||    
T  31559948 attttgttatttttgatgaaaatatgtgtatgttttctgtaatacccttaatcatttattatttcatttt 31559879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 195 - 267
Target Start/End: Original strand, 17942511 - 17942583
Alignment:
Q  195 ttttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||| ||||||||||||||| |||||||||||| ||||||||||||||||  |||||||||||||||||||||    
T  17942511 tttttttatttttgatgaaattatgtgcgtgttctctataatacccttaaccatttattatttcattttattt 17942583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 196 - 267
Target Start/End: Original strand, 8235691 - 8235762
Alignment:
Q  196 tttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||| |||| | |||||| ||||||||||||||||||||||| ||||||||||||||| |||||    
T  8235691 tttgttattttttatgatattatgtgtgtgttttctataatacccttaatcatttattatttcattctattt 8235762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 15064906 - 15064833
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    ||||||||||||||||||||| |||||| ||||||| |||| |||||||||  ||||||||||| ||| |||||    
T  15064906 attttgttatttttgatgaaattatgtgtgtgttttttatactacccttaaccatttattatttgattatattt 15064833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 266
Target Start/End: Complemental strand, 21277645 - 21277574
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttatt 266  Q
    |||||||||||||| |||||||| | || || |||||||||||||||||||||||||| || |||||| ||||    
T  21277645 attttgttattttttatgaaaatttatgtgt-ttttctataatacccttaattatttagtacttcattctatt 21277574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 30734820 - 30734772
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaa 244  Q
    ||||||||||||||||||||| |||||  ||||||||||||||||||||||    
T  30734820 attttgttatttttgatgaaattatgt--gtgttttctataatacccttaa 30734772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 266
Target Start/End: Original strand, 14287054 - 14287125
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttatt 266  Q
    |||||||||||||| |||||| | ||||| | ||||||||||||||||||    |||||||||||||||||||    
T  14287054 attttgttattttttatgaaattctgtgctt-ttttctataatacccttacccctttattatttcattttatt 14287125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 1605579 - 1605616
Alignment:
Q  157 tactccttccgttttaaaatacatgtccattttggaga 194  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  1605579 tactccctccgtttcaaaatacatgtccattttggaga 1605616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 7761301 - 7761338
Alignment:
Q  157 tactccttccgttttaaaatacatgtccattttggaga 194  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  7761301 tactccctccgtttcaaaatacatgtccattttggaga 7761338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 29260192 - 29260229
Alignment:
Q  157 tactccttccgttttaaaatacatgtccattttggaga 194  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  29260192 tactccctccgtttcaaaatacatgtccattttggaga 29260229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 10285269 - 10285196
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  10285269 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 10285196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 12807065 - 12806992
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  12807065 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 12806992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 25773714 - 25773787
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  25773714 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 25773787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 40886822 - 40886749
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||    
T  40886822 attttgttatttttgatgaaaatatgtgtgtattttctataatacccttaatcatttattatttcattttattt 40886749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 30720704 - 30720631
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||| || ||||||||||||||||||    
T  30720704 attttgttatttttgatgaaaatatgtgtgtgttttttataatacccttaatcatctattatttcattttattt 30720631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 36561311 - 36561238
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||  |||||||||||||||||||||    
T  36561311 attttgttatttttgatgaaaatatgtgtgtgttttctataatacctttaaccatttattatttcattttattt 36561238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 7277634 - 7277561
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    ||||||||||||||||| ||| |||||| ||||||||||||||||| ||||  ||||||||||||||| |||||    
T  7277634 attttgttatttttgatcaaattatgtgtgtgttttctataatacctttaaccatttattatttcattatattt 7277561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 25683440 - 25683367
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    ||||||||||||||||| ||| |||||| ||||||||||||||||||||||  ||||||||||| ||| |||||    
T  25683440 attttgttatttttgataaaattatgtgtgtgttttctataatacccttaaccatttattattttattctattt 25683367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 37900836 - 37900763
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||| |||||||||||||| ||| || ||||||||||||||||||||||  ||||||||||||||| |||||    
T  37900836 attttgatatttttgatgaaattatatgtgtgttttctataatacccttaaccatttattatttcattctattt 37900763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 254
Target Start/End: Complemental strand, 23098446 - 23098386
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttatta 254  Q
    ||||||||||||||||||||| ||||||| ||||| |||||||||||||||  ||||||||    
T  23098446 attttgttatttttgatgaaattatgtgcatgtttcctataatacccttaaccatttatta 23098386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 266
Target Start/End: Complemental strand, 30403174 - 30403101
Alignment:
Q  194 attttgttatttttgatgaaaatatgtg-cgtgttttctataatacccttaattatttattatttcattttatt 266  Q
    ||||||||||||||||||||| | ||||   | ||||||||||||| |||||| |||| |||||||||||||||    
T  30403174 attttgttatttttgatgaaattctgtgtttttttttctataatactcttaatcatttgttatttcattttatt 30403101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 30720772 - 30720732
Alignment:
Q  154 tattactccttccgttttaaaatacatgtccattttggaga 194  Q
    ||||||||| ||||||| |||||||||||||||||||||||    
T  30720772 tattactccctccgtttcaaaatacatgtccattttggaga 30720732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 194
Target Start/End: Complemental strand, 15305270 - 15305228
Alignment:
Q  152 agtattactccttccgttttaaaatacatgtccattttggaga 194  Q
    |||| |||||| ||||||| |||||||||||||||||||||||    
T  15305270 agtagtactccctccgtttcaaaatacatgtccattttggaga 15305228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 194
Target Start/End: Complemental strand, 12807130 - 12807093
Alignment:
Q  157 tactccttccgttttaaaatacatgtccattttggaga 194  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  12807130 tactccctccgtttcaaaatacatgtccattttggaga 12807093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 15304822 - 15304859
Alignment:
Q  157 tactccttccgttttaaaatacatgtccattttggaga 194  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  15304822 tactccctccgttttaaaatacatgtccattttagaga 15304859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 25773649 - 25773686
Alignment:
Q  157 tactccttccgttttaaaatacatgtccattttggaga 194  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  25773649 tactccctccgtttcaaaatacatgtccattttggaga 25773686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 734518 - 734478
Alignment:
Q  226 ttttctataatacccttaattatttattatttcattttatt 266  Q
    |||||||||||||||||| | ||||||||||||||| ||||    
T  734518 ttttctataatacccttactcatttattatttcattctatt 734478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 11319656 - 11319696
Alignment:
Q  226 ttttctataatacccttaattatttattatttcattttatt 266  Q
    |||||||||||||||||| | ||||||||||||||| ||||    
T  11319656 ttttctataatacccttactcatttattatttcattctatt 11319696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 39070980 - 39071020
Alignment:
Q  226 ttttctataatacccttaattatttattatttcattttatt 266  Q
    |||||||||||||||||| | ||||||||||||||| ||||    
T  39070980 ttttctataatacccttactcatttattatttcattctatt 39071020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 12071626 - 12071699
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  12071626 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 12071699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 24706459 - 24706386
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  24706459 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 24706386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 25704716 - 25704789
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  25704716 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 25704789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 34324794 - 34324721
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  34324794 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 34324721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 14261109 - 14261182
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  14261109 attttgttatttttgataaaaatatgtgtgtgttttctataatacccttaataatttattatttcattttattt 14261182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 194 - 263
Target Start/End: Original strand, 21310490 - 21310559
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcatttt 263  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  21310490 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcatttt 21310559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 22321479 - 22321406
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  22321479 attttgttattttttatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 22321406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 40122697 - 40122624
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||    
T  40122697 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcattttattt 40122624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 44568902 - 44568975
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  44568902 attttgttattttttatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 44568975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 50767929 - 50768002
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||    
T  50767929 attttgttatttttgatgaaaatatatgtgtgttttctataatacccttaataatttattatttcattttattt 50768002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 21661747 - 21661674
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||| ||||  |||||||||||||||||||||    
T  21661747 attttattatttttgatgaaaatatgtgtgtgttttctataatacctttaaccatttattatttcattttattt 21661674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 21670511 - 21670438
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||| ||||  |||||||||||||||||||||    
T  21670511 atttttttatttttgatgaaaatatgtgtgtgttttctataatacctttaaccatttattatttcattttattt 21670438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 20249224 - 20249152
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||||| |||| |||||| |||||| |||||||||||||||  ||||||||||| ||| |||||    
T  20249224 attttgttatttttgaagaaattatgtgtgtgttt-ctataatacccttaaccatttattattttattctattt 20249152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 266
Target Start/End: Complemental strand, 20714560 - 20714488
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtg-ttttctataatacccttaattatttattatttcattttatt 266  Q
    ||||||||||||||||||||| |||||| ||| |||||||||||| ||||||  ||||||||||||||| ||||    
T  20714560 attttgttatttttgatgaaactatgtgtgtgtttttctataata-ccttaaccatttattatttcattatatt 20714488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 249
Target Start/End: Original strand, 1988100 - 1988155
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatt 249  Q
    ||||| ||||||||||||||| |||||  |||||||||||||||||||||| ||||    
T  1988100 attttattatttttgatgaaattatgtatgtgttttctataatacccttaactatt 1988155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 267
Target Start/End: Original strand, 21064834 - 21064898
Alignment:
Q  201 tatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||| ||||||  |||||| |||||||| ||||| |||||||||||||||| |||||    
T  21064834 tatttttgatgaaattatgtg--tgttttttataatactcttaactatttattatttcattctattt 21064898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 32543547 - 32543617
Alignment:
Q  195 ttttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttatt 266  Q
    |||||||| ||||||||||| | | || || |||| ||||||||||||||| ||||||||||||||||||||    
T  32543547 ttttgttaattttgatgaaattctttgtgtttttt-tataatacccttaatcatttattatttcattttatt 32543617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 34284229 - 34284171
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttat 252  Q
    ||||||||| ||||||||||| ||| ||  | |||||||||||||||||||||||||||    
T  34284229 attttgttacttttgatgaaactatttgtattttttctataatacccttaattatttat 34284171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 194
Target Start/End: Complemental strand, 22321544 - 22321507
Alignment:
Q  157 tactccttccgttttaaaatacatgtccattttggaga 194  Q
    |||||||||||||| |||||||||||||||||||||||    
T  22321544 tactccttccgtttcaaaatacatgtccattttggaga 22321507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 261
Target Start/End: Complemental strand, 6129160 - 6129093
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcatt 261  Q
    ||||||||||||||||| ||| | | ||  | ||||||| |||||||||||| |||||||||||||||    
T  6129160 attttgttatttttgataaaattctttgtattttttctacaatacccttaatcatttattatttcatt 6129093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 12071561 - 12071598
Alignment:
Q  157 tactccttccgttttaaaatacatgtccattttggaga 194  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  12071561 tactccctccgtttcaaaatacatgtccattttggaga 12071598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 14261044 - 14261081
Alignment:
Q  157 tactccttccgttttaaaatacatgtccattttggaga 194  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  14261044 tactccctccgtttcaaaatacatgtccattttggaga 14261081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 266
Target Start/End: Complemental strand, 18507472 - 18507404
Alignment:
Q  197 ttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttatt 266  Q
    |||||||||||||||||| | |||| || |||||||||||| |||| |  ||||||||||||||| ||||    
T  18507472 ttgttatttttgatgaaattttgtgtgttttttctataata-ccttgacaatttattatttcattatatt 18507404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 21310425 - 21310462
Alignment:
Q  157 tactccttccgttttaaaatacatgtccattttggaga 194  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  21310425 tactccctccgtttcaaaatacatgtccattttggaga 21310462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 194
Target Start/End: Complemental strand, 24706524 - 24706487
Alignment:
Q  157 tactccttccgttttaaaatacatgtccattttggaga 194  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  24706524 tactccatccgtttcaaaatacatgtccattttggaga 24706487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 25704651 - 25704688
Alignment:
Q  157 tactccttccgttttaaaatacatgtccattttggaga 194  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  25704651 tactccctccgtttcaaaatacatgtccattttggaga 25704688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 194
Target Start/End: Complemental strand, 34324860 - 34324823
Alignment:
Q  157 tactccttccgttttaaaatacatgtccattttggaga 194  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  34324860 tactccctccgtttcaaaatacatgtccattttggaga 34324823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 194
Target Start/End: Complemental strand, 40122762 - 40122725
Alignment:
Q  157 tactccttccgttttaaaatacatgtccattttggaga 194  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  40122762 tactccctccgtttcaaaatacatgtccattttggaga 40122725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 190
Target Start/End: Original strand, 44568837 - 44568870
Alignment:
Q  157 tactccttccgttttaaaatacatgtccattttg 190  Q
    |||||||||||||| |||||||||||||||||||    
T  44568837 tactccttccgtttcaaaatacatgtccattttg 44568870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 31892303 - 31892372
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    ||||| ||||||||||||||| ||||||    |||||||||||||| || |  ||||||||||||||| |||||    
T  31892303 attttattatttttgatgaaattatgtg----ttttctataatacctttgaccatttattatttcattctattt 31892372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 13364908 - 13364981
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  13364908 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 13364981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 23088143 - 23088070
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  23088143 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 23088070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 46694322 - 46694249
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  46694322 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 46694249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 36881347 - 36881418
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  36881347 attttgttatttttgatgaaaatatgtg--tgttttctataatacccttaattatttattatttcattttattt 36881418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 198920 - 198993
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||    
T  198920 attttgttatttttgatgaaaatatatgtgtgttttctataatacccttaatcatttattatttcattttattt 198993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 3383141 - 3383214
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||    
T  3383141 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaacatttattatttcattttattt 3383214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 194 - 264
Target Start/End: Complemental strand, 19241880 - 19241810
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcatttta 264  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||    
T  19241880 attttgttatttttgatgaaaatatatgtgtgttttctataatacccttaatcatttattatttcatttta 19241810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 194 - 263
Target Start/End: Original strand, 29375203 - 29375272
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcatttt 263  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||| ||||    
T  29375203 attttcttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcttttt 29375272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 43750202 - 43750275
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    ||||||||||||||||||||| ||| || |||||||||||||||| |||||  ||||||||||||||| |||||    
T  43750202 attttgttatttttgatgaaattatatgtgtgttttctataatacacttaaccatttattatttcattctattt 43750275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 198852 - 198892
Alignment:
Q  154 tattactccttccgttttaaaatacatgtccattttggaga 194  Q
    ||||||||| ||||||| |||||||||||||||||||||||    
T  198852 tattactccctccgtttcaaaatacatgtccattttggaga 198892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 266
Target Start/End: Complemental strand, 19897139 - 19897067
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttatt 266  Q
    |||||||||||||| |||||| | | || || |||||||||||||||||| |  |||||||||||||| ||||    
T  19897139 attttgttattttttatgaaattctttgtgttttttctataatacccttactcttttattatttcattctatt 19897067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 38805238 - 38805282
Alignment:
Q  150 aaagtattactccttccgttttaaaatacatgtccattttggaga 194  Q
    |||||| |||||| |||||||||||||||||||||||||| ||||    
T  38805238 aaagtactactccctccgttttaaaatacatgtccattttagaga 38805282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 233
Target Start/End: Complemental strand, 32835168 - 32835129
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctat 233  Q
    ||||||||||||||||||||| |||||| |||||||||||    
T  32835168 attttgttatttttgatgaaattatgtgtgtgttttctat 32835129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 261
Target Start/End: Original strand, 37781002 - 37781069
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcatt 261  Q
    ||||| ||||||||||||||| | |||| || |||||||||||||  ||||  |||||||||||||||    
T  37781002 attttattatttttgatgaaattctgtgtgttttttctataatactattaaccatttattatttcatt 37781069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 36881281 - 36881319
Alignment:
Q  156 ttactccttccgttttaaaatacatgtccattttggaga 194  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  36881281 ttactccctccgtttcaaaatacatgtccattttggaga 36881319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 3383076 - 3383113
Alignment:
Q  157 tactccttccgttttaaaatacatgtccattttggaga 194  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  3383076 tactccttccgtttcaaaatatatgtccattttggaga 3383113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 12094582 - 12094619
Alignment:
Q  157 tactccttccgttttaaaatacatgtccattttggaga 194  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  12094582 tactccctccgtttcaaaatacatgtccattttggaga 12094619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 29375138 - 29375175
Alignment:
Q  157 tactccttccgttttaaaatacatgtccattttggaga 194  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  29375138 tactccctccgtttcaaaatacatgtccattttggaga 29375175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 27707171 - 27707127
Alignment:
Q  223 gtgttttctataatacccttaattatttattatttcattttattt 267  Q
    ||||||||||||||| ||||||  |||||||||||| ||||||||    
T  27707171 gtgttttctataatatccttaaccatttattatttctttttattt 27707127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 46694390 - 46694350
Alignment:
Q  154 tattactccttccgttttaaaatacatgtccattttggaga 194  Q
    ||||||||| ||||||| ||||||||||||| |||||||||    
T  46694390 tattactccctccgtttcaaaatacatgtcctttttggaga 46694350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 3518973 - 3519046
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  3518973 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaataatttattatttcattttattt 3519046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 39938235 - 39938308
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  39938235 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 39938308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 1102568 - 1102641
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||    
T  1102568 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcattttattt 1102641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 23366854 - 23366927
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  23366854 attttgttattttttatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 23366927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 1646354 - 1646425
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||    
T  1646354 attttgttatttttgatgaaaatatgtg--tgttttctataatacccttaatcatttattatttcattttattt 1646425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 194 - 256
Target Start/End: Complemental strand, 37673949 - 37673887
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatt 256  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  37673949 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatt 37673887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 206 - 267
Target Start/End: Complemental strand, 22388335 - 22388274
Alignment:
Q  206 ttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  22388335 ttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 22388274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 12969951 - 12969878
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    ||||||||||||||||||||| ||||||  | |||||||||||||||||||  ||||||||||| ||| |||||    
T  12969951 attttgttatttttgatgaaattatgtgtatattttctataatacccttaaccatttattattttattctattt 12969878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 35179147 - 35179090
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattattta 251  Q
    ||||||||||||||||||||| | |||| || |||||||||||| |||||| ||||||    
T  35179147 attttgttatttttgatgaaattttgtgtgttttttctataataaccttaactattta 35179090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 189
Target Start/End: Original strand, 34222058 - 34222090
Alignment:
Q  157 tactccttccgttttaaaatacatgtccatttt 189  Q
    |||||||||||||||||||||||||||||||||    
T  34222058 tactccttccgttttaaaatacatgtccatttt 34222090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 1102503 - 1102540
Alignment:
Q  157 tactccttccgttttaaaatacatgtccattttggaga 194  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  1102503 tactccctccgtttcaaaatacatgtccattttggaga 1102540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 3518908 - 3518945
Alignment:
Q  157 tactccttccgttttaaaatacatgtccattttggaga 194  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  3518908 tactccctccgtttcaaaatacatgtccattttggaga 3518945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 194
Target Start/End: Complemental strand, 12970016 - 12969979
Alignment:
Q  157 tactccttccgttttaaaatacatgtccattttggaga 194  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  12970016 tactccctccgtttcaaaatacatgtccattttggaga 12969979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 266
Target Start/End: Original strand, 14779844 - 14779914
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttatt 266  Q
    ||||| ||||||||||||||| ||| || || ||||||||||||  |||| | ||||||||||||||| ||||    
T  14779844 atttttttatttttgatgaaattatttgtgttttttctataata--cttactcatttattatttcattatatt 14779914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 194
Target Start/End: Complemental strand, 34224431 - 34224394
Alignment:
Q  157 tactccttccgttttaaaatacatgtccattttggaga 194  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  34224431 tactccctccgtttcaaaatacatgtccattttggaga 34224394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 4917859 - 4917899
Alignment:
Q  226 ttttctataatacccttaattatttattatttcattttatt 266  Q
    ||||||||||||  |||||||||||||||||||||| ||||    
T  4917859 ttttctataataatcttaattatttattatttcattctatt 4917899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 23366790 - 23366826
Alignment:
Q  158 actccttccgttttaaaatacatgtccattttggaga 194  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  23366790 actccctccgtttcaaaatacatgtccattttggaga 23366826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 24777764 - 24777804
Alignment:
Q  226 ttttctataatacccttaattatttattatttcattttatt 266  Q
    |||| ||||||||||||| ||||||||||||||||| ||||    
T  24777764 ttttttataatacccttatttatttattatttcattctatt 24777804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 23045491 - 23045418
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  23045491 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 23045418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 40783869 - 40783796
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  40783869 attttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattt 40783796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 321691 - 321764
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||    
T  321691 attttgttatttttgatgaaaatatgtgtgtgttttctataatatccttaatcatttattatttcattttattt 321764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 194 - 264
Target Start/End: Original strand, 284398 - 284468
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcatttta 264  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||    
T  284398 attttgttatttttgatgaaaatatatgtgtgttttctataatacccttaatcatttattatttcatttta 284468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 47038062 - 47037991
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||    
T  47038062 attttgttatttttgatgaaaatatgtg--tgttttctataatacccttaatcatttattatttcattttattt 47037991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 23526305 - 23526378
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||  ||||||||||||||| |||||    
T  23526305 attttgttatttttgatgaaattatgtgtgtgttttctataatacccttaaccatttattatttcattctattt 23526378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 46771702 - 46771775
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||  ||||||| ||||||| |||||    
T  46771702 attttgttatttttgatgaaattatgtgtgtgttttctataatacccttaaccatttattttttcattctattt 46771775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 24772117 - 24772044
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    ||||||||||||||||||||| |||||| || |||||||||||||||||||  ||||||||||| ||| |||||    
T  24772117 attttgttatttttgatgaaattatgtgtgtattttctataatacccttaaccatttattattttattctattt 24772044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 33082810 - 33082883
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    ||||||||||||||||||||| |||||| || |||||||||||||||||||  ||||||||||| ||| |||||    
T  33082810 attttgttatttttgatgaaattatgtgtgtattttctataatacccttaaccatttattattttattctattt 33082883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 27211176 - 27211103
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||||| |||| ||| || ||||||||||||||||||||||  ||||||||||| ||| |||||    
T  27211176 attttgttatttttgaggaaattatatgtgtgttttctataatacccttaaccatttattattttattctattt 27211103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 1749372 - 1749445
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    ||||||||||||||||||||| ||| || ||||||||||||||| | ||||  ||||||||||| ||| |||||    
T  1749372 attttgttatttttgatgaaattatatgtgtgttttctataatagcattaaccatttattattttattctattt 1749445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 52037332 - 52037261
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    ||||| ||||||||||| ||| ||||||  ||||||||||||||| |||||  ||||||||||||||| |||||    
T  52037332 attttattatttttgataaaattatgtg--tgttttctataatactcttaaccatttattatttcattctattt 52037261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 284330 - 284370
Alignment:
Q  154 tattactccttccgttttaaaatacatgtccattttggaga 194  Q
    ||||||||| ||||||| |||||||||||||||||||||||    
T  284330 tattactccctccgtttcaaaatacatgtccattttggaga 284370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 257
Target Start/End: Complemental strand, 1838039 - 1837978
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattattt 257  Q
    ||||||||||||||||||||| |||||  || ||||||||||||||||||   |||||||||||    
T  1838039 attttgttatttttgatgaaattatgt--gttttttctataatacccttacccatttattattt 1837978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 23045559 - 23045519
Alignment:
Q  154 tattactccttccgttttaaaatacatgtccattttggaga 194  Q
    ||||||||| ||||||| |||||||||||||||||||||||    
T  23045559 tattactccctccgtttcaaaatacatgtccattttggaga 23045519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 261
Target Start/End: Original strand, 33711192 - 33711227
Alignment:
Q  226 ttttctataatacccttaattatttattatttcatt 261  Q
    |||| |||||||||||||||||||||||||||||||    
T  33711192 ttttttataatacccttaattatttattatttcatt 33711227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 194
Target Start/End: Original strand, 41959076 - 41959115
Alignment:
Q  155 attactccttccgttttaaaatacatgtccattttggaga 194  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  41959076 attactccctccgtttcaaaatacatgtccattttggaga 41959115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 266
Target Start/End: Complemental strand, 31003992 - 31003926
Alignment:
Q  200 ttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttatt 266  Q
    |||||||| |||||| ||||||  | |||||||||||||||||||  ||||||||||| ||| ||||    
T  31003992 ttatttttaatgaaagtatgtgtattttttctataatacccttaaccatttattatttaattctatt 31003926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 3943060 - 3943097
Alignment:
Q  157 tactccttccgttttaaaatacatgtccattttggaga 194  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  3943060 tactccctccgtttcaaaatacatgtccattttggaga 3943097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 263
Target Start/End: Original strand, 7765078 - 7765147
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcatttt 263  Q
    ||||||||||||||| ||||| ||| || ||||||||  |||||||| |||  ||||||||||| |||||    
T  7765078 attttgttatttttggtgaaattatatgtgtgttttccgtaatacccataaccatttattatttaatttt 7765147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 9588670 - 9588707
Alignment:
Q  157 tactccttccgttttaaaatacatgtccattttggaga 194  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  9588670 tactccctccgtttcaaaatacatgtccattttggaga 9588707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 194
Target Start/End: Complemental strand, 13985044 - 13985007
Alignment:
Q  157 tactccttccgttttaaaatacatgtccattttggaga 194  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  13985044 tactccatccgtttcaaaatacatgtccattttggaga 13985007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 266
Target Start/End: Complemental strand, 31061662 - 31061594
Alignment:
Q  197 ttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttatt 266  Q
    ||||||||||| |||||| |||||| || ||||| ||||||||| |||  ||||||||||||||| ||||    
T  31061662 ttgttattttttatgaaattatgtgtgttttttccataataccc-taaccatttattatttcattatatt 31061594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 44227848 - 44227885
Alignment:
Q  157 tactccttccgttttaaaatacatgtccattttggaga 194  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  44227848 tactccctccgtttcaaaatacatgtccattttggaga 44227885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 194
Target Start/End: Complemental strand, 47038127 - 47038090
Alignment:
Q  157 tactccttccgttttaaaatacatgtccattttggaga 194  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  47038127 tactccatccgtttcaaaatacatgtccattttggaga 47038090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 266
Target Start/End: Original strand, 52478033 - 52478103
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttatt 266  Q
    ||||||||||||||||||||| | |||  || |||||||||||| ||||||  |||||| |||||||| ||||    
T  52478033 attttgttatttttgatgaaattttgt--gttttttctataataaccttaaaaatttatcatttcattctatt 52478103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 262
Target Start/End: Complemental strand, 2572131 - 2572095
Alignment:
Q  226 ttttctataatacccttaattatttattatttcattt 262  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  2572131 ttttctataataaccttaattatttaatatttcattt 2572095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 194
Target Start/End: Complemental strand, 27211240 - 27211204
Alignment:
Q  158 actccttccgttttaaaatacatgtccattttggaga 194  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  27211240 actccctccgtttcaaaatacatgtccattttggaga 27211204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1770 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 227 - 300
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||    
T  227 attttgttattttttatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcattttattt 300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 45519 - 45592
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    ||||||||||||||||||||| |||||| || |||||||||||||||||||  ||||||||||| ||| |||||    
T  45519 attttgttatttttgatgaaattatgtgtgtattttctataatacccttaaccatttattattttattctattt 45592  T

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Target: scaffold0062 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 475 - 404
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttattt 267  Q
    ||||||||||||||||| ||| ||||||  |||||| ||||||||||||||| ||||||||||||||| |||||    
T  475 attttgttatttttgataaaattatgtg--tgttttttataatacccttaatcatttattatttcattctattt 404  T

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Target: scaffold0056 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 266
Target Start/End: Original strand, 70889 - 70961
Alignment:
Q  194 attttgttatttttgatgaaaatatgtgcgtgttttctataatacccttaattatttattatttcattttatt 266  Q
    ||||||||||||||||||||| | |||| || |||||| ||| ||||||||  ||||||||||||||| ||||    
T  70889 attttgttatttttgatgaaattctgtgtgttttttctgtaacacccttaaccatttattatttcattctatt 70961  T

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Target: scaffold0025 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 267
Target Start/End: Complemental strand, 65375 - 65302
Alignment:
Q  195 ttttgttatttttgatgaaaatatgtgcgtgtttt-ctataatacccttaattatttattatttcattttattt 267  Q
    |||| ||||||||||||||| ||| || || |||| |||||||||||||||  ||||||||||||||| |||||    
T  65375 ttttattatttttgatgaaattatatgtgtttttttctataatacccttaaccatttattatttcattctattt 65302  T

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Target: scaffold0257 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 23467 - 23504
Alignment:
Q  157 tactccttccgttttaaaatacatgtccattttggaga 194  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  23467 tactccctccgtttcaaaatacatgtccattttggaga 23504  T

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Target: scaffold0257; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 23916 - 23876
Alignment:
Q  154 tattactccttccgttttaaaatacatgtccattttggaga 194  Q
    ||||||||| ||||||| |||||||||||||||||| ||||    
T  23916 tattactccatccgtttcaaaatacatgtccattttagaga 23876  T

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