View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4306_high_29 (Length: 271)
Name: NF4306_high_29
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4306_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 253
Target Start/End: Original strand, 44145240 - 44145482
Alignment:
| Q |
11 |
cacagaacctgcataactgcgcactagaaagccataaccagtacaacattcaaaacaaccaacaccaacattaattttcagcctctgtacaggtagagta |
110 |
Q |
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| T |
44145240 |
cacagaacctgcataactgcgcactagaaagccataaccagtacaacattcaaaacaaccaacaccaacattaattttcagcctctgtacaggtagagta |
44145339 |
T |
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| Q |
111 |
atggagtagccacatttggacagagtgtttccagttttacaccctttcttgctagattaattcggtcaggactcgggaagatattcatgtctggtatcta |
210 |
Q |
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| T |
44145340 |
atggagtagccacatttggacagagtgtttccagttttacaccctttcttgctagattaattcagtcaggactcgggaagatattcatgtctggtatcta |
44145439 |
T |
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| Q |
211 |
aaggaaattcgtcacactattaagtacagtggctctccacact |
253 |
Q |
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| T |
44145440 |
aaggaaattcgtcacactattaagtacagtggctctccacact |
44145482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 126 - 253
Target Start/End: Complemental strand, 44156610 - 44156490
Alignment:
| Q |
126 |
ttggacagagtgtttccagttttacaccctttcttgctagattaattcggtcaggactcgggaagatattcatgtctggtatctaaaggaaattcgtcac |
225 |
Q |
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| T |
44156610 |
ttggacaaagtgtttccaattttacaacctttctttctagattaatttggtc-------gggaatatatttatgtctggtatctaaaggaaattcgtcac |
44156518 |
T |
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| Q |
226 |
actattaagtacagtggctctccacact |
253 |
Q |
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| T |
44156517 |
actattaagtacagtggctctccacact |
44156490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 44158164 - 44158099
Alignment:
| Q |
42 |
ccataaccagtacaacattcaaaacaaccaacaccaacattaattttcagcctctgtacaggtaga |
107 |
Q |
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| T |
44158164 |
ccataaccagtacaatattcaaaacaatcagcatcagcattagttttcagcctatgtacaggtaga |
44158099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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