View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4306_high_3 (Length: 525)
Name: NF4306_high_3
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4306_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 166 - 473
Target Start/End: Complemental strand, 27292989 - 27292682
Alignment:
| Q |
166 |
gttttattgtatcagcaattgactcagatataatcttaccatgttgtcccttgtcatgaaatgatcaacttgatggaaacaattattgtttcttaaataa |
265 |
Q |
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| T |
27292989 |
gttttactgtatcagcaattgactcagatataagcttaccatgttgtcccttgtcatgaaatgatcaacttgatggaaacaattattatttcttaaataa |
27292890 |
T |
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| Q |
266 |
tcatatgatgctttcagtacagctataaatcagtgttttcaaaaccaaaccaaccggttgaaccttgaaccagactttaccacggtttgatcccagtttt |
365 |
Q |
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| T |
27292889 |
tcatatgatgctttcagtacagctataaatcaatgttttcaaaaccaaaccaaccggttgaaccttgaaccagactttaccacggtttgatcccagtttc |
27292790 |
T |
|
| Q |
366 |
gtctaagttcaagcagttcaaatctgttgacttgactcaggtctcatcatgtcaatattcgtttcaatttttatacactgcagttaacatatatttatga |
465 |
Q |
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| T |
27292789 |
gtctaagttcaagcagttcaaatccgttgacttgactcaggtctcatcatgtcaatattcgtttcaatttttatacactgcagttaacatatatttatga |
27292690 |
T |
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| Q |
466 |
tttgacca |
473 |
Q |
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|||||||| |
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| T |
27292689 |
tttgacca |
27292682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 27293059 - 27292986
Alignment:
| Q |
60 |
attatcatacaactagttcaccactaatttgttatgtgacttaagcattgctttaagtgattattagattgttt |
133 |
Q |
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| T |
27293059 |
attatcatacaactagttcactactaatttgttatgtgacttaagcattgctttaagtgattattagattgttt |
27292986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 27293143 - 27293085
Alignment:
| Q |
1 |
tgctactgccatttgttttattgttttgtgaacttgggcatgttgaggcaagaaatgga |
59 |
Q |
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| T |
27293143 |
tgctactgccatttgttttattgttttgtgaacttggtcatgttgaggtaagaaatgga |
27293085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 476 - 518
Target Start/End: Complemental strand, 27292611 - 27292569
Alignment:
| Q |
476 |
cttaatgcagaattgaatggttttagtgacatattgatgatgt |
518 |
Q |
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| T |
27292611 |
cttaatgcagaattgaatgattttagtgacatattgatgatgt |
27292569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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