View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4306_high_31 (Length: 252)
Name: NF4306_high_31
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4306_high_31 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 45792075 - 45792309
Alignment:
| Q |
1 |
tgagtattttggttttcgcataaattttgttatttgacatttgtctgaccaagataaatccaatacaaggactatttggtctttgaagtctgagaaatct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45792075 |
tgagtattttggttttcgcataaattttgttatttgacatttgtctgaccaagataaatccaatacaaggactatttggtctttgaagtctgagaaatct |
45792174 |
T |
|
| Q |
101 |
atacaatcctgaatcatatatgggctttcttgttacttattgaataaagcataaagacatatgtgtaatcttggcaaagatcacaatgcaggcatttgac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45792175 |
atacaatcctgaatcatatatgggctttcttgttacttattgaataatgcattaagacatatgtgtaatcttggcaaagatcacaatgcaggcatttgac |
45792274 |
T |
|
| Q |
201 |
tatgatacttctaatttagaactacagaaacatgt |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
45792275 |
tatgatacttctaatttagaactacagaaacatgt |
45792309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University