View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4306_high_32 (Length: 251)

Name: NF4306_high_32
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4306_high_32
NF4306_high_32
[»] chr7 (15 HSPs)
chr7 (30-243)||(19811072-19811284)
chr7 (39-158)||(3796702-3796821)
chr7 (51-158)||(47879691-47879798)
chr7 (51-158)||(47914769-47914876)
chr7 (51-160)||(39218880-39218989)
chr7 (51-158)||(12893947-12894054)
chr7 (51-158)||(40996129-40996236)
chr7 (51-158)||(44343001-44343108)
chr7 (51-157)||(31401923-31402029)
chr7 (51-157)||(43392026-43392132)
chr7 (1-43)||(19251943-19251986)
chr7 (52-103)||(19252018-19252069)
chr7 (53-102)||(10676302-10676351)
chr7 (51-156)||(7718802-7718907)
chr7 (118-158)||(12964057-12964097)
[»] chr3 (18 HSPs)
chr3 (45-160)||(15492402-15492517)
chr3 (51-158)||(50899252-50899359)
chr3 (51-159)||(6976188-6976296)
chr3 (51-158)||(44761618-44761725)
chr3 (50-154)||(54626075-54626179)
chr3 (1-100)||(27899699-27899800)
chr3 (51-158)||(995483-995590)
chr3 (51-158)||(3999148-3999255)
chr3 (121-158)||(53928648-53928685)
chr3 (51-103)||(12104046-12104098)
chr3 (1-43)||(6976114-6976157)
chr3 (118-157)||(39842119-39842158)
chr3 (51-158)||(539340-539444)
chr3 (40-102)||(5825986-5826048)
chr3 (1-38)||(19254413-19254451)
chr3 (1-38)||(29448566-29448604)
chr3 (79-157)||(25418975-25419053)
chr3 (1-36)||(23535768-23535804)
[»] chr8 (12 HSPs)
chr8 (45-158)||(39189450-39189563)
chr8 (51-158)||(10391694-10391801)
chr8 (51-157)||(32711129-32711235)
chr8 (51-156)||(24501324-24501429)
chr8 (51-158)||(33850933-33851040)
chr8 (51-100)||(4949615-4949664)
chr8 (69-154)||(41479765-41479850)
chr8 (1-38)||(5576265-5576303)
chr8 (87-158)||(42734815-42734886)
chr8 (51-157)||(42936794-42936900)
chr8 (121-157)||(13477816-13477852)
chr8 (76-104)||(29930358-29930386)
[»] chr4 (22 HSPs)
chr4 (51-158)||(32952206-32952313)
chr4 (45-158)||(20021918-20022031)
chr4 (51-158)||(34228160-34228267)
chr4 (51-160)||(11090759-11090869)
chr4 (51-157)||(42787183-42787289)
chr4 (51-151)||(39479133-39479233)
chr4 (51-158)||(22202634-22202741)
chr4 (5-105)||(26340502-26340604)
chr4 (45-103)||(44770539-44770597)
chr4 (51-157)||(7007858-7007964)
chr4 (45-94)||(56444431-56444480)
chr4 (69-157)||(49469798-49469886)
chr4 (6-43)||(8712289-8712327)
chr4 (51-154)||(25331654-25331757)
chr4 (61-159)||(25446652-25446750)
chr4 (51-157)||(55975127-55975233)
chr4 (54-106)||(9163671-9163723)
chr4 (121-157)||(16020689-16020725)
chr4 (69-158)||(24130461-24130550)
chr4 (121-157)||(28542125-28542161)
chr4 (1-36)||(31314547-31314583)
chr4 (121-157)||(53276398-53276434)
[»] chr2 (15 HSPs)
chr2 (51-158)||(21136589-21136696)
chr2 (51-158)||(32125837-32125944)
chr2 (69-162)||(12407954-12408047)
chr2 (69-162)||(12420014-12420107)
chr2 (5-163)||(11997189-11997348)
chr2 (1-38)||(31170226-31170264)
chr2 (51-158)||(44766445-44766552)
chr2 (51-157)||(9120682-9120788)
chr2 (61-102)||(10125049-10125090)
chr2 (121-158)||(20605561-20605598)
chr2 (51-152)||(1789980-1790081)
chr2 (122-158)||(16270412-16270448)
chr2 (53-158)||(22551374-22551479)
chr2 (1-36)||(22551507-22551543)
chr2 (51-152)||(31170101-31170202)
[»] chr1 (8 HSPs)
chr1 (51-158)||(35280257-35280364)
chr1 (51-157)||(956059-956165)
chr1 (69-157)||(48525090-48525178)
chr1 (51-158)||(6303775-6303882)
chr1 (51-158)||(19451281-19451388)
chr1 (51-105)||(31622320-31622374)
chr1 (69-157)||(49418576-49418664)
chr1 (51-158)||(28823882-28823989)
[»] scaffold0151 (1 HSPs)
scaffold0151 (51-157)||(24533-24639)
[»] scaffold0113 (1 HSPs)
scaffold0113 (69-157)||(37666-37754)
[»] chr5 (1 HSPs)
chr5 (51-158)||(21147719-21147826)
[»] chr6 (3 HSPs)
chr6 (51-158)||(2300149-2300256)
chr6 (51-158)||(6196940-6197047)
chr6 (121-157)||(29114867-29114903)


Alignment Details
Target: chr7 (Bit Score: 141; Significance: 5e-74; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 30 - 243
Target Start/End: Original strand, 19811072 - 19811284
Alignment:
Q  30 atcttatgatgtaagtcctggtagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaatta 129  Q
    |||||||||| ||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  19811072 atcttatgatttaagtcctgatagtcttttgaaatcataaaagtcattaaaatcctacaaaatcttttaaaatcctcgagacttttttaagcaaaaatta 19811171  T
Q  130 tccttcaaaattctaatccaatacacccctaagaataaaaaccaaaacctgcttgttgaaaaagcaatacacatgaaagttcacctcaataatttatgtt 229  Q
    ||||||||||| ||||| |||||||||| |||||| |||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  19811172 tccttcaaaatcctaattcaatacaccc-taagaacaaaaactaaaaccagcttgttgaaaaagcaatacacttgaaagttcacctcaataatttatgtt 19811270  T
Q  230 aaacaagtataatc 243  Q
    | ||||||||||||    
T  19811271 acacaagtataatc 19811284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 158
Target Start/End: Complemental strand, 3796821 - 3796702
Alignment:
Q  39 tgtaagtcctggtagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaa 138  Q
    ||||| ||||| ||||||||| ||||||||||| | ||| ||||||||||||||||||||||||| | ||||       |  |||||||| ||||| |||    
T  3796821 tgtaaatcctgatagtcttttaaaatcataaaagtcatttaaatcctacaaaatcttttaaaatctttgagacttttttactcaaaaattgtcctttaaa 3796722  T
Q  139 attctaatccaatacacccc 158  Q
    || ||||| |||||||||||    
T  3796721 atcctaattcaatacacccc 3796702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 158
Target Start/End: Original strand, 47879691 - 47879798
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||| ||||||| ||| | || |||||||| |||| ||||||||||||||| |||       || ||||||||||| || ||||| |||||||||    
T  47879691 tagtcttttaaaatcatcaaagtcatcaaaatcctgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattatcttttaaaatcctaatccaa 47879790  T
Q  151 tacacccc 158  Q
    ||||||||    
T  47879791 tacacccc 47879798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 158
Target Start/End: Original strand, 47914769 - 47914876
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||| ||||||| ||| | || |||||||| |||| ||||||||||||||| |||       || ||||||||||| || ||||| |||||||||    
T  47914769 tagtcttttaaaatcatcaaagtcatcaaaatcctgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattatcttttaaaatcctaatccaa 47914868  T
Q  151 tacacccc 158  Q
    ||||||||    
T  47914869 tacacccc 47914876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 160
Target Start/End: Complemental strand, 39218989 - 39218880
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||| ||||||| ||| |||| |||||| | |||| ||||||||||||||| |||       || |||||||| ||||| ||||| ||||| |||    
T  39218989 tagtcttttaaaatcatcaaagtaatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcctaattcaa 39218890  T
Q  151 tacaccccta 160  Q
    ||||||||||    
T  39218889 tacaccccta 39218880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 158
Target Start/End: Original strand, 12893947 - 12894054
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||| ||||||| ||| | || |||||| | |||| ||||||||||||||| |||       || |||||||| ||||| ||||| |||||||||    
T  12893947 tagtcttttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaa 12894046  T
Q  151 tacacccc 158  Q
    ||||||||    
T  12894047 tacacccc 12894054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 158
Target Start/End: Complemental strand, 40996236 - 40996129
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||| ||||||| ||| | || |||||| | |||| ||||||||||||||| |||       || |||||||||||||| ||||| ||||| |||    
T  40996236 tagtcttttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaatcaaaaattatcctttaaaatcctaatacaa 40996137  T
Q  151 tacacccc 158  Q
    ||||||||    
T  40996136 tacacccc 40996129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 158
Target Start/End: Complemental strand, 44343108 - 44343001
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||| ||||||| ||| | || |||||| | |||| ||||||||||||||| |||       || |||||||| ||||| ||||| |||||||||    
T  44343108 tagtcttttaaaatcatcaaagtcatgaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaa 44343009  T
Q  151 tacacccc 158  Q
    ||||||||    
T  44343008 tacacccc 44343001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 157
Target Start/End: Original strand, 31401923 - 31402029
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||| ||||||| ||  | || |||||||| |||| ||||||||||||||| |||       || |||||||| ||||| ||||||||||| |||    
T  31401923 tagtcttttaaaatcatcaaggttatcaaaatcctgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaattctaattcaa 31402022  T
Q  151 tacaccc 157  Q
    |||||||    
T  31402023 tacaccc 31402029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 157
Target Start/End: Complemental strand, 43392132 - 43392026
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||| ||||||| ||| | || ||||| || |||| ||||||||||||||| | |       || |||||||||||||| ||||| |||||||||    
T  43392132 tagtcttttaaaatcatcaaagtcatcaaaattctgcaaagtcttttaaaatcctcaatacttttttaaacaaaaattatcctttaaaatcctaatccaa 43392033  T
Q  151 tacaccc 157  Q
    |||||||    
T  43392032 tacaccc 43392026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 19251943 - 19251986
Alignment:
Q  1 aattcataaaatcatttcaaatc-tttaaaatcttatgatgtaa 43  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||    
T  19251943 aattcataaaatcatttcacatcctttaaaatcttatgatgtaa 19251986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 19252018 - 19252069
Alignment:
Q  52 agtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatc 103  Q
    |||||||| ||||||| ||| | ||||||||| |||||||||||||||||||    
T  19252018 agtcttttaaaatcatgaaagtcattaaaatcttacaaaatcttttaaaatc 19252069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 10676351 - 10676302
Alignment:
Q  53 gtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaat 102  Q
    ||||||| ||||||| ||| | ||||||||| ||||||||||||||||||    
T  10676351 gtcttttaaaatcatgaaagtcattaaaatcttacaaaatcttttaaaat 10676302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 156
Target Start/End: Complemental strand, 7718907 - 7718802
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||| ||||||| ||| | || |||||| | |||| ||||||||||||||| |||       || |||||||| | ||| ||||| |||||||||    
T  7718907 tagtcttttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattgttctttaaaatcctaatccaa 7718808  T
Q  151 tacacc 156  Q
    ||||||    
T  7718807 tacacc 7718802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 12964057 - 12964097
Alignment:
Q  118 aagcaaaaattatccttcaaaattctaatccaatacacccc 158  Q
    ||||||||||| ||||| ||||| |||||||||||||||||    
T  12964057 aagcaaaaattgtcctttaaaatcctaatccaatacacccc 12964097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 160
Target Start/End: Complemental strand, 15492517 - 15492402
Alignment:
Q  45 tcctggtagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattcta 144  Q
    ||||| ||||||||| ||||||| ||||| ||||||||| ||||||||||||||||||| | || |       ||||||||||| ||||| |||||||||    
T  15492517 tcctgatagtcttttaaaatcatgaaaatcattaaaatcatacaaaatcttttaaaatctttgaaacttttttaagcaaaaattgtcctttaaaattcta 15492418  T
Q  145 atccaatacaccccta 160  Q
    ||||||||||||||||    
T  15492417 atccaatacaccccta 15492402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 51 - 158
Target Start/End: Complemental strand, 50899359 - 50899252
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||| | ||||       ||||||||||| |||||  |||| |||||| ||    
T  50899359 tagtcttttaaaatcataaaaatcattaaaatcctacaaaatcttttaaaatctttgagacttttttaagcaaaaattgtcctttgaaatcctaatctaa 50899260  T
Q  151 tacacccc 158  Q
    ||||||||    
T  50899259 tacacccc 50899252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 159
Target Start/End: Original strand, 6976188 - 6976296
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||| ||||||||||| | |||||||||||||||| |||||||||||||| ||||       ||||||||||| ||||| |||||  ||||| ||    
T  6976188 tagtcttttaaaatcataaaagtcattaaaatcctacaaagtcttttaaaatccttgagacttttttaagcaaaaattgtcctttaaaatcataatcaaa 6976287  T
Q  151 tacacccct 159  Q
    |||||||||    
T  6976288 tacacccct 6976296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 51 - 158
Target Start/End: Complemental strand, 44761725 - 44761618
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||| ||||||| ||| | || ||||||||||||| ||||||||||||||| |||       || |||||||||||||| ||||| |||||||||    
T  44761725 tagtcttttaaaatcatcaaagtcatcaaaatcctacaaagtcttttaaaatcctcaagacttttttaaacaaaaattatcctttaaaatcctaatccaa 44761626  T
Q  151 tacacccc 158  Q
    ||||||||    
T  44761625 tacacccc 44761618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 154
Target Start/End: Original strand, 54626075 - 54626179
Alignment:
Q  50 gtagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatcca 149  Q
    |||||||||| ||||||| ||| | || |||||||| |||| ||||||||||||||| |||       || |||||||||||||| ||||| ||||||||    
T  54626075 gtagtcttttaaaatcatcaaagtcatcaaaatcctgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattatcctttaaaatcctaatcca 54626174  T
Q  150 ataca 154  Q
    |||||    
T  54626175 ataca 54626179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 27899699 - 27899800
Alignment:
Q  1 aattcataaaatcatttcaaatc-tttaaaatcttatgatgtaagtcctggta-gtcttttgaaatcataaaaataattaaaatcctacaaaatctttta 98  Q
    |||| |||||||||||||||||| |||||||||||||||  ||| |||||  | || |||| ||||||| ||| | ||||||||||| ||||||||||||    
T  27899699 aatttataaaatcatttcaaatcctttaaaatcttatgagttaaatcctgcaaagttttttaaaatcatcaaagtcattaaaatcctgcaaaatctttta 27899798  T
Q  99 aa 100  Q
    ||    
T  27899799 aa 27899800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 158
Target Start/End: Complemental strand, 995590 - 995483
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||| ||||||| ||| | || |||||| | |||| ||||||||||||||| |||       || |||||||| ||||| ||||| |||||||||    
T  995590 tagtcttttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagatttttttaaacaaaaattgtcctttaaaatcctaatccaa 995491  T
Q  151 tacacccc 158  Q
    ||||||||    
T  995490 tacacccc 995483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 158
Target Start/End: Complemental strand, 3999255 - 3999148
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||| ||||||| ||| | || |||||| | |||| ||||||||||||||| |||       || |||||||| ||||| ||||| |||||||||    
T  3999255 tagtcttttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaa 3999156  T
Q  151 tacacccc 158  Q
    ||||||||    
T  3999155 tacacccc 3999148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 158
Target Start/End: Complemental strand, 53928685 - 53928648
Alignment:
Q  121 caaaaattatccttcaaaattctaatccaatacacccc 158  Q
    |||||||||||||| |||||||||||||||||||||||    
T  53928685 caaaaattatcctttaaaattctaatccaatacacccc 53928648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 12104046 - 12104098
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatc 103  Q
    ||||||||| ||||||| ||| | |||||||||||| ||||||||||||||||    
T  12104046 tagtcttttaaaatcatgaaagtcattaaaatcctataaaatcttttaaaatc 12104098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 6976114 - 6976157
Alignment:
Q  1 aattcataaaatcatttcaaatc-tttaaaatcttatgatgtaa 43  Q
    |||||| |||||||||||||||| ||||||||||||||||||||    
T  6976114 aattcacaaaatcatttcaaatcctttaaaatcttatgatgtaa 6976157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 157
Target Start/End: Complemental strand, 39842158 - 39842119
Alignment:
Q  118 aagcaaaaattatccttcaaaattctaatccaatacaccc 157  Q
    ||||||||||||||||| ||||| ||||||||||||||||    
T  39842158 aagcaaaaattatcctttaaaatcctaatccaatacaccc 39842119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 158
Target Start/End: Complemental strand, 539444 - 539340
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||| ||||||| ||| | |||||| ||| ||||| |||||||||||| ||||||       ||||||||||| ||||| ||||| |||||||||    
T  539444 tagtcttttaaaatcatgaaagtcattaaa-tcc-acaaagtcttttaaaatcttcgagacttttttaagcaaaaatt-tccttaaaaatgctaatccaa 539348  T
Q  151 tacacccc 158  Q
    ||||||||    
T  539347 tacacccc 539340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 5825986 - 5826048
Alignment:
Q  40 gtaagtcctggtagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaat 102  Q
    |||| ||||| ||| ||||| ||||||| ||||| ||||||||  ||||||||||||||||||    
T  5825986 gtaaatcctgataggcttttaaaatcatgaaaatcattaaaattttacaaaatcttttaaaat 5826048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 19254413 - 19254451
Alignment:
Q  1 aattcataaaatcatttcaaatc-tttaaaatcttatga 38  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  19254413 aattcataaaatcatttcaaatcatttaaaatcttatga 19254451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 29448604 - 29448566
Alignment:
Q  1 aattcataaaatcatttcaaat-ctttaaaatcttatga 38  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  29448604 aattcataaaatcatttcaaatcctttaaaatcttatga 29448566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 157
Target Start/End: Original strand, 25418975 - 25419053
Alignment:
Q  79 aaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaatacaccc 157  Q
    ||||||| |||| ||||||||||||||| |||       || |||||||| ||||| ||||| ||||||||||||||||    
T  25418975 aaatcctccaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaatacaccc 25419053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 23535804 - 23535768
Alignment:
Q  1 aattcataaaatcatttcaaat-ctttaaaatcttat 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  23535804 aattcataaaatcatttcaaatcctttaaaatcttat 23535768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 158
Target Start/End: Complemental strand, 39189563 - 39189450
Alignment:
Q  45 tcctggtagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattcta 144  Q
    ||||| ||||||||| ||||||| ||| | ||||||||||||||||||||||||||||| | ||||       |||| |||||| ||||| ||||| |||    
T  39189563 tcctgatagtcttttaaaatcatgaaagtcattaaaatcctacaaaatcttttaaaatctttgagacttttttaagctaaaattgtcctttaaaatccta 39189464  T
Q  145 atccaatacacccc 158  Q
    ||| ||||||||||    
T  39189463 atctaatacacccc 39189450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 158
Target Start/End: Complemental strand, 10391801 - 10391694
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||| ||||||| ||| | || |||||| | |||| ||||||||||||||| |||       || |||||||||||||| |||||||||||||||    
T  10391801 tagtcttttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattatcctttaaaattctaatccaa 10391702  T
Q  151 tacacccc 158  Q
    ||||||||    
T  10391701 tacacccc 10391694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 157
Target Start/End: Complemental strand, 32711235 - 32711129
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||| ||||||| ||| | || |||||||| |||| ||||||||||||||| |||       || |||||||||||||| ||||| |||||||||    
T  32711235 tagtcttttaaaatcatcaaagtcatcaaaatcctgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattatcctttaaaatcctaatccaa 32711136  T
Q  151 tacaccc 157  Q
    |||||||    
T  32711135 tacaccc 32711129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 156
Target Start/End: Complemental strand, 24501429 - 24501324
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||| ||||||| ||| | || |||||| | |||||||||||||||||||| |||       || |||||||| ||||| ||||| |||||||||    
T  24501429 tagtcttttaaaatcatcaaagtcatcaaaatcttgcaaaatcttttaaaatcctcaagatttttttaaacaaaaattgtcctttaaaatcctaatccaa 24501330  T
Q  151 tacacc 156  Q
    ||||||    
T  24501329 tacacc 24501324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 158
Target Start/End: Original strand, 33850933 - 33851040
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||| ||||||| ||| | || |||||| | |||| ||||||||||||||| |||       || |||||||| ||||| ||||| |||||||||    
T  33850933 tagtcttttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaa 33851032  T
Q  151 tacacccc 158  Q
    ||||||||    
T  33851033 tacacccc 33851040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 4949664 - 4949615
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaa 100  Q
    ||||||||| ||||||| ||||| ||||||||||| ||||||||||||||    
T  4949664 tagtcttttaaaatcatcaaaattattaaaatcctccaaaatcttttaaa 4949615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 154
Target Start/End: Original strand, 41479765 - 41479850
Alignment:
Q  69 aaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaataca 154  Q
    ||||| || |||||| |||||| ||||||||||||||| |||       || |||||||||||||| ||||| |||||||||||||    
T  41479765 aaaatcatcaaaatcttacaaagtcttttaaaatcctcaagacttttttaaacaaaaattatcctttaaaatcctaatccaataca 41479850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 5576303 - 5576265
Alignment:
Q  1 aattcataaaatcatttcaaat-ctttaaaatcttatga 38  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  5576303 aattcataaaatcatttcaaatcctttaaaatcttatga 5576265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 158
Target Start/End: Complemental strand, 42734886 - 42734815
Alignment:
Q  87 caaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaatacacccc 158  Q
    |||| ||||||||||||||| |||       || |||||||||||||| ||||| |||||||||||||||||    
T  42734886 caaagtcttttaaaatcctcaagacttttttaaacaaaaattatcctttaaaatcctaatccaatacacccc 42734815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 157
Target Start/End: Complemental strand, 42936900 - 42936794
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||  ||||||| ||| | || |||||| | |||| ||||||||||||||| |||       || |||||||| ||||| ||||| |||||||||    
T  42936900 tagtctttcaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaa 42936801  T
Q  151 tacaccc 157  Q
    |||||||    
T  42936800 tacaccc 42936794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 157
Target Start/End: Complemental strand, 13477852 - 13477816
Alignment:
Q  121 caaaaattatccttcaaaattctaatccaatacaccc 157  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  13477852 caaaaattatcctttaaaatcctaatccaatacaccc 13477816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 104
Target Start/End: Complemental strand, 29930386 - 29930358
Alignment:
Q  76 ttaaaatcctacaaaatcttttaaaatcc 104  Q
    |||||||||||||||||||||||||||||    
T  29930386 ttaaaatcctacaaaatcttttaaaatcc 29930358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 158
Target Start/End: Original strand, 32952206 - 32952313
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||| |||| || ||| | || ||||||||||||| ||||||||||||||| |||       || |||||||||||||| |||||||| ||||||    
T  32952206 tagtcttttaaaattatcaaagtcatcaaaatcctacaaagtcttttaaaatcctcaagacttatttaaacaaaaattatcctttaaaattcttatccaa 32952305  T
Q  151 tacacccc 158  Q
    ||||||||    
T  32952306 tacacccc 32952313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 158
Target Start/End: Original strand, 20021918 - 20022031
Alignment:
Q  45 tcctggtagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattcta 144  Q
    ||||| ||||||||| ||||||| ||| | ||||||||||||||||||||||||||||| | ||||       ||||||||||| | ||| ||| |  ||    
T  20021918 tcctgatagtcttttaaaatcatgaaagtcattaaaatcctacaaaatcttttaaaatctttgagacttttttaagcaaaaattgttctttaaagtcata 20022017  T
Q  145 atccaatacacccc 158  Q
    ||||||||||||||    
T  20022018 atccaatacacccc 20022031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 158
Target Start/End: Complemental strand, 34228267 - 34228160
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||| ||||||| ||| | || |||||||| |||| ||||||||||||||| |||       || |||||||||||||| |||||  ||||||||    
T  34228267 tagtcttttaaaatcatcaaagtcatcaaaatcctgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattatcctttaaaatcataatccaa 34228168  T
Q  151 tacacccc 158  Q
    ||||||||    
T  34228167 tacacccc 34228160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 160
Target Start/End: Original strand, 11090759 - 11090869
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaa-attctaatcca 149  Q
    ||||||||| ||||||| ||| | ||| ||||| ||||||||||||||||||| || |||       ||||||| ||| ||||| ||| |||||||||||    
T  11090759 tagtcttttaaaatcatgaaagtcattgaaatcatacaaaatcttttaaaatcttcaagacttttttaagcaaacattgtcctttaaagattctaatcca 11090858  T
Q  150 atacaccccta 160  Q
    |||||||||||    
T  11090859 atacaccccta 11090869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 157
Target Start/End: Original strand, 42787183 - 42787289
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||| ||||||| ||| | || ||||| || ||||||||||||||||| || |||       || |||||||| ||||| |||||||||||||||    
T  42787183 tagtcttttaaaatcatcaaagtcataaaaattctgcaaaatcttttaaaatcttcaagacttttttaaacaaaaattgtcctttaaaattctaatccaa 42787282  T
Q  151 tacaccc 157  Q
    |||||||    
T  42787283 tacaccc 42787289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 151
Target Start/End: Complemental strand, 39479233 - 39479133
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    |||||||||  |||||| ||| | || ||||||||  ||||||||||||||||||| |||       || |||||||||||||| |||||||||||||||    
T  39479233 tagtcttttataatcatcaaagtcatcaaaatcctctaaaatcttttaaaatcctcaagacttttttaaacaaaaattatcctttaaaattctaatccaa 39479134  T
Q  151 t 151  Q
    |    
T  39479133 t 39479133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 158
Target Start/End: Original strand, 22202634 - 22202741
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||| ||||||| ||| | || |||||| | |||| ||||||||||||||| |||       || |||||||| ||||| ||||| |||||||||    
T  22202634 tagtcttttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagacttctttaaacaaaaattgtcctttaaaatcctaatccaa 22202733  T
Q  151 tacacccc 158  Q
    ||||||||    
T  22202734 tacacccc 22202741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 26340502 - 26340604
Alignment:
Q  5 cataaaatcatttcaaatc-tttaaaatcttatgatgtaagtcc-tggtagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaat 102  Q
    ||||||||| ||||||||| |||||||||||||||||||| ||| | | | ||| || ||||||| ||| | ||||||||| | |||| |||||||||||    
T  26340502 cataaaatcttttcaaatcctttaaaatcttatgatgtaaatccgttgaaatctattaaaatcatgaaagtcattaaaatcatgcaaagtcttttaaaat 26340601  T
Q  103 cct 105  Q
    |||    
T  26340602 cct 26340604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 44770597 - 44770539
Alignment:
Q  45 tcctggtagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatc 103  Q
    ||||| ||||||||| ||||||| ||| | |||||||||| ||||||||||||||||||    
T  44770597 tcctgatagtcttttaaaatcatcaaagtcattaaaatccaacaaaatcttttaaaatc 44770539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 157
Target Start/End: Original strand, 7007858 - 7007964
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||| ||||||| ||| | || ||||| || |||| ||||||||||||||| |||       || ||||||||||| || ||||| |||||||||    
T  7007858 tagtcttttaaaatcatcaaagtcatcaaaattctgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattatcttttaaaatcctaatccaa 7007957  T
Q  151 tacaccc 157  Q
    |||||||    
T  7007958 tacaccc 7007964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 56444480 - 56444431
Alignment:
Q  45 tcctggtagtcttttgaaatcataaaaataattaaaatcctacaaaatct 94  Q
    ||||| ||||||||| ||||||| ||||| ||||||||||||||||||||    
T  56444480 tcctgatagtcttttaaaatcatgaaaatcattaaaatcctacaaaatct 56444431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 157
Target Start/End: Original strand, 49469798 - 49469886
Alignment:
Q  69 aaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaatacaccc 157  Q
    ||||| || |||||||| |||| || |||||||||||| |||       || |||||||| ||||| ||||||||||||||||||||||    
T  49469798 aaaatcatcaaaatccttcaaagtcctttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaattctaatccaatacaccc 49469886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 8712289 - 8712327
Alignment:
Q  6 ataaaatcatttcaaatc-tttaaaatcttatgatgtaa 43  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  8712289 ataaaatcatttcaaatcctttaaaatcttatgatgtaa 8712327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 154
Target Start/End: Original strand, 25331654 - 25331757
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||| ||||||| ||| | || |||||| | |||| ||||||||||||||| |||       || |||||||| ||||| ||||| |||||||||    
T  25331654 tagtcttttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaa 25331753  T
Q  151 taca 154  Q
    ||||    
T  25331754 taca 25331757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 159
Target Start/End: Original strand, 25446652 - 25446750
Alignment:
Q  61 aaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaatacacccct 159  Q
    ||||||| ||| | || |||||| | |||| ||||||||||||||| |||       || |||||||| ||||| ||||| ||||||||||||||||||    
T  25446652 aaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaatacacccct 25446750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 157
Target Start/End: Original strand, 55975127 - 55975233
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||| ||||||| ||| | || |||||| |  ||| ||||||||||||||| |||       || |||||||| ||||| ||||| |||||||||    
T  55975127 tagtcttttaaaatcatcaaagtcatcaaaatcatctaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaa 55975226  T
Q  151 tacaccc 157  Q
    |||||||    
T  55975227 tacaccc 55975233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 9163671 - 9163723
Alignment:
Q  54 tcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctc 106  Q
    |||||| ||||||||||| | ||||||||| |  |||||||||||||||||||    
T  9163671 tcttttaaaatcataaaagtcattaaaatcatggaaaatcttttaaaatcctc 9163723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 16020689 - 16020725
Alignment:
Q  121 caaaaattatccttcaaaattctaatccaatacaccc 157  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  16020689 caaaaattgtcctttaaaattctaatccaatacaccc 16020725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 158
Target Start/End: Complemental strand, 24130550 - 24130461
Alignment:
Q  69 aaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaatacacccc 158  Q
    ||||| || |||||| | |||| ||||||||||||||| |||       || |||||||| ||||| ||||| |||||||||||||||||    
T  24130550 aaaatcatcaaaatcatgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaatacacccc 24130461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 28542125 - 28542161
Alignment:
Q  121 caaaaattatccttcaaaattctaatccaatacaccc 157  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  28542125 caaaaattatcctttaaaatcctaatccaatacaccc 28542161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 31314583 - 31314547
Alignment:
Q  1 aattcataaaatcatttcaaat-ctttaaaatcttat 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  31314583 aattcataaaatcatttcaaatcctttaaaatcttat 31314547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 53276398 - 53276434
Alignment:
Q  121 caaaaattatccttcaaaattctaatccaatacaccc 157  Q
    ||||||||||| || ||||||||||||||||||||||    
T  53276398 caaaaattatcatttaaaattctaatccaatacaccc 53276434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 158
Target Start/End: Complemental strand, 21136696 - 21136589
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||| ||||||| ||| | || ||||||||||||| ||||||||||||||| |||       || |||||||||||||| ||||| |||||||||    
T  21136696 tagtcttttaaaatcatcaaagtcatcaaaatcctacaaagtcttttaaaatcctcaagacttttttaaacaaaaattatcctttaaaatcctaatccaa 21136597  T
Q  151 tacacccc 158  Q
     |||||||    
T  21136596 aacacccc 21136589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 158
Target Start/End: Original strand, 32125837 - 32125944
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||| ||||||| ||| | || ||||| ||||||| ||||||||||||||| |||       || |||||||||||||| ||||| |||||||||    
T  32125837 tagtcttttaaaatcatcaaagtcatcaaaattctacaaagtcttttaaaatcctcaagacttttttaaacaaaaattatcctttaaaatcctaatccaa 32125936  T
Q  151 tacacccc 158  Q
    ||||||||    
T  32125937 tacacccc 32125944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 162
Target Start/End: Original strand, 12407954 - 12408047
Alignment:
Q  69 aaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaatacacccctaag 162  Q
    ||||| || |||||| | |||| ||||||||||||||| |||       || |||||||||||||| ||||| |||||||||||||||||||||    
T  12407954 aaaatcatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattatcctttaaaatcctaatccaatacacccctaag 12408047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 162
Target Start/End: Original strand, 12420014 - 12420107
Alignment:
Q  69 aaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaatacacccctaag 162  Q
    ||||| || |||||| | |||| ||||||||||||||| |||       || |||||||||||||| ||||| |||||||||||||||||||||    
T  12420014 aaaatcatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattatcctttaaaatcctaatccaatacacccctaag 12420107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 163
Target Start/End: Complemental strand, 11997348 - 11997189
Alignment:
Q  5 cataaaatcatttcaaatc-tttaaaatcttatgatgtaagtcc-tggtagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaat 102  Q
    ||||||||| ||||||||| |||||||||||||||||||| ||| | | | ||  || ||||||| ||| | ||||||||| | |||| |||||||||||    
T  11997348 cataaaatcttttcaaatcctttaaaatcttatgatgtaaatccgttgaaatccattaaaatcatgaaagtcattaaaatcatgcaaagtcttttaaaat 11997249  T
Q  103 cctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaatacacccctaaga 163  Q
    |||  | |       || |||||||||||||| |||||  |||||||||||||||||||||    
T  11997248 ccttaaaactttttaaa-caaaaattatcctttaaaatcataatccaatacacccctaaga 11997189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 31170264 - 31170226
Alignment:
Q  1 aattcataaaatcatttcaaat-ctttaaaatcttatga 38  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  31170264 aattcataaaatcatttcaaatcctttaaaatcttatga 31170226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 158
Target Start/End: Original strand, 44766445 - 44766552
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||| ||||||| ||| | || |||||| | |||||||||||||||||||| |||       || |||||||| || || ||||| ||||| |||    
T  44766445 tagtcttttaaaatcatcaaagtcatcaaaatcttgcaaaatcttttaaaatcctcaagacttttttaaacaaaaattgtcttttaaaatcctaattcaa 44766544  T
Q  151 tacacccc 158  Q
    ||||||||    
T  44766545 tacacccc 44766552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 157
Target Start/End: Original strand, 9120682 - 9120788
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||| |||| || ||||| || |||||| |  ||| ||||||||||||||| |||       || |||||||||||||| ||||| |||||| ||    
T  9120682 tagtcttttaaaattatcaaaatcatcaaaatctttaaaagtcttttaaaatcctcaagacttttttaaacaaaaattatcctttaaaatcctaatctaa 9120781  T
Q  151 tacaccc 157  Q
    |||||||    
T  9120782 tacaccc 9120788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 10125090 - 10125049
Alignment:
Q  61 aaatcataaaaataattaaaatcctacaaaatcttttaaaat 102  Q
    ||||||| ||| | ||||||||||||||||||||||||||||    
T  10125090 aaatcatgaaagtcattaaaatcctacaaaatcttttaaaat 10125049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 20605561 - 20605598
Alignment:
Q  121 caaaaattatccttcaaaattctaatccaatacacccc 158  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  20605561 caaaaattatcctttaaaatcctaatccaatacacccc 20605598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 152
Target Start/End: Original strand, 1789980 - 1790081
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||| ||||||| ||| | || |||||| |||||| ||||||||||||||| |||       || |||||||| ||||| ||||| |||||| ||    
T  1789980 tagtcttttaaaatcatcaaagtcatcaaaatcttacaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcctaatctaa 1790079  T
Q  151 ta 152  Q
    ||    
T  1790080 ta 1790081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 16270412 - 16270448
Alignment:
Q  122 aaaaattatccttcaaaattctaatccaatacacccc 158  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  16270412 aaaaattatcctttaaaatcctaatccaatacacccc 16270448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 158
Target Start/End: Complemental strand, 22551479 - 22551374
Alignment:
Q  53 gtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaata 152  Q
    ||||||| ||||||| ||| | || |||||| | |||| ||||||||||||||| |||       || |||||||| ||||| |||||  ||||||||||    
T  22551479 gtcttttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcttaatccaata 22551380  T
Q  153 cacccc 158  Q
    ||||||    
T  22551379 cacccc 22551374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 22551543 - 22551507
Alignment:
Q  1 aattcataaaatcatttcaaat-ctttaaaatcttat 36  Q
    |||||||||||||||||||||| ||||||||||||||    
T  22551543 aattcataaaatcatttcaaatcctttaaaatcttat 22551507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 152
Target Start/End: Complemental strand, 31170202 - 31170101
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||| ||||||| ||| | || |||||| | |||| ||||||||||||||| |||       || |||||||| ||||| ||||| |||||||||    
T  31170202 tagtcttttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagactttttaaaacaaaaattgtcctttaaaatcctaatccaa 31170103  T
Q  151 ta 152  Q
    ||    
T  31170102 ta 31170101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 158
Target Start/End: Original strand, 35280257 - 35280364
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||| || |||||||| |||| |||||| | |||| ||||||||||||||| |||       || |||||||| ||||| ||||| |||||||||    
T  35280257 tagtcttttaaattcataaaagtaatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaa 35280356  T
Q  151 tacacccc 158  Q
    ||||||||    
T  35280357 tacacccc 35280364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 157
Target Start/End: Original strand, 956059 - 956165
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||| ||||||| ||| | || |||||||| |||| ||||||||||||||| |||       || |||||||| || || |||||||||||||||    
T  956059 tagtcttttaaaatcatcaaagtcatcaaaatcctgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcttttaaaattctaatccaa 956158  T
Q  151 tacaccc 157  Q
    |||||||    
T  956159 tacaccc 956165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 157
Target Start/End: Original strand, 48525090 - 48525178
Alignment:
Q  69 aaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaatacaccc 157  Q
    ||||| || |||||||| |||||||||||||||||||| ||        || |||||||||||||| ||||| ||||||||||||||||    
T  48525090 aaaatcatcaaaatcctgcaaaatcttttaaaatcctcaagtcatttttaaacaaaaattatcctttaaaatcctaatccaatacaccc 48525178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 158
Target Start/End: Complemental strand, 6303882 - 6303775
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||| ||||||| ||| | || |||||| | |||| ||||||||||||||| |||       || |||||||| ||||| ||||| |||||||||    
T  6303882 tagtcttttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaa 6303783  T
Q  151 tacacccc 158  Q
    ||||||||    
T  6303782 tacacccc 6303775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 158
Target Start/End: Complemental strand, 19451388 - 19451281
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||| ||||||| ||| | || |||||| | |||| ||||||||||||||| |||       || |||||||||||||| |||||  ||||||||    
T  19451388 tagtcttttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattatcctttaaaatcataatccaa 19451289  T
Q  151 tacacccc 158  Q
    ||||||||    
T  19451288 tacacccc 19451281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 31622374 - 31622320
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcct 105  Q
    ||||||||| ||||||| ||| |||| ||||||||||||| ||||||||||||||    
T  31622374 tagtcttttaaaatcatcaaagtaatcaaaatcctacaaagtcttttaaaatcct 31622320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 157
Target Start/End: Original strand, 49418576 - 49418664
Alignment:
Q  69 aaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaatacaccc 157  Q
    ||||| || |||||||| |||| ||||||||||||||| |||       || |||||||||||||| |||||||||||| ||| |||||    
T  49418576 aaaatcatcaaaatccttcaaagtcttttaaaatcctcaagatttttttaaacaaaaattatcctttaaaattctaatctaatgcaccc 49418664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 158
Target Start/End: Complemental strand, 28823989 - 28823882
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||| ||||||| ||| | || |||||| |||||| ||||||||||||||| |||       || |||||||| |||||  ||||  ||||||||    
T  28823989 tagtcttttaaaatcatcaaagtcatcaaaatcttacaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttgaaatattaatccaa 28823890  T
Q  151 tacacccc 158  Q
    ||||||||    
T  28823889 tacacccc 28823882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 157
Target Start/End: Complemental strand, 24639 - 24533
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||| ||||||| ||| | || |||||||| |||| ||||||||||||||| | |       || |||||||| ||||| |||||||||||||||    
T  24639 tagtcttttaaaatcatcaaagtcatcaaaatcctccaaagtcttttaaaatcctcaatacttttttaaacaaaaattgtcctttaaaattctaatccaa 24540  T
Q  151 tacaccc 157  Q
    |||||||    
T  24539 tacaccc 24533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 157
Target Start/End: Complemental strand, 37754 - 37666
Alignment:
Q  69 aaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaatacaccc 157  Q
    ||||| || |||||| | |||||||||||||||| ||| |||       || |||||||||||||| ||||||||||||||||||||||    
T  37754 aaaatcatcaaaatcatccaaaatcttttaaaattctcaagacttttttaaacaaaaattatcctttaaaattctaatccaatacaccc 37666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 158
Target Start/End: Original strand, 21147719 - 21147826
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||| ||||||| ||| | || |||||| |  ||||||||||||||||||| |||       || |||||||| ||||| ||||| |||||||||    
T  21147719 tagtcttttaaaatcatcaaagtcatcaaaatcttggaaaatcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaa 21147818  T
Q  151 tacacccc 158  Q
    ||||||||    
T  21147819 tacacccc 21147826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 158
Target Start/End: Complemental strand, 2300256 - 2300149
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    |||| |||| ||||||| ||| | || |||||| | |||| ||||||||||||||| |||       || |||||||| ||||| ||||| |||||||||    
T  2300256 tagtattttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagatttttttaaacaaaaattgtcctttaaaatcctaatccaa 2300157  T
Q  151 tacacccc 158  Q
    ||||||||    
T  2300156 tacacccc 2300149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 158
Target Start/End: Complemental strand, 6197047 - 6196940
Alignment:
Q  51 tagtcttttgaaatcataaaaataattaaaatcctacaaaatcttttaaaatcctcgagannnnnnnaagcaaaaattatccttcaaaattctaatccaa 150  Q
    ||||||||| ||||||| ||| | || |||||| |  ||| ||||||||||||||| |||       || |||||||| ||||| ||||| |||||||||    
T  6197047 tagtcttttaaaatcatcaaagtcatcaaaatcttggaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaa 6196948  T
Q  151 tacacccc 158  Q
    ||||||||    
T  6196947 tacacccc 6196940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 29114867 - 29114903
Alignment:
Q  121 caaaaattatccttcaaaattctaatccaatacaccc 157  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  29114867 caaaaattatcctttaaaatcctaatccaatacaccc 29114903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University