View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4306_high_39 (Length: 241)
Name: NF4306_high_39
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4306_high_39 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 14915593 - 14915827
Alignment:
| Q |
1 |
cctggagaagatgattcagaggagatcacaattaatgaatatttcgttaaccggcgaaaaattcctcttaagtattctgctcgtcttccatgtattaatg |
100 |
Q |
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| T |
14915593 |
cctggagaagatgattcagaggagatcacaatttatgaatatttcgttaaccggcgaaaaattcctcttaagtattctgctcgtcttccatgtattaatg |
14915692 |
T |
|
| Q |
101 |
tcgggaatccaaaacgacctacgtatttcccaattgaggtggattagctgctttattttagtttagtattaacttcagaatgtgtattagcttaaacgtt |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14915693 |
tcgggaagccaaaacgacctacgtatttcccaattgaggtagattagctgctttattttagtttagtattaacttcagaatgtgtattagcttaaacgtt |
14915792 |
T |
|
| Q |
201 |
ttccaatctcgcctaggttctttcaattcatatca |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
14915793 |
ttccaatctcgcctaggttctttcaattcatatca |
14915827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 2 - 216
Target Start/End: Original strand, 38123159 - 38123373
Alignment:
| Q |
2 |
ctggagaagatgattcagaggagatcacaattaatgaatatttcgttaaccggcgaaaaattcctcttaagtattctgctcgtcttccatgtattaatgt |
101 |
Q |
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| T |
38123159 |
ctggagaggatgatacagaagagatcacggtttatgattatttcgttcatcggcgaaaaattgatctacagtactctgctggtcttccatgtattaatgt |
38123258 |
T |
|
| Q |
102 |
cgggaatccaaaacgacctacgtatttcccaattgaggtggattagctgctttattttagtttagtattaacttcagaatgtgtattagcttaaacgttt |
201 |
Q |
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| T |
38123259 |
tgggaagccaaaacgacctacttatatcccaattgaggtagattagctgctttattttagtttagtactaacttcagaatgtgtatttgcttaatgtttt |
38123358 |
T |
|
| Q |
202 |
tccaatctcgcctag |
216 |
Q |
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||||||||| ||||| |
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| T |
38123359 |
tccaatctcacctag |
38123373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 38114675 - 38114862
Alignment:
| Q |
1 |
cctggagaagatgattcagaggagatcacaattaatgaatatttcgttaaccggcgaaaaattcctcttaagtattctgctcgtcttccatgtattaatg |
100 |
Q |
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||||||||||||||| | ||||||||||| || |||| ||||| || ||||| |||||||| |||| |||| || ||| ||| ||||||||||||| |
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| T |
38114675 |
cctggagaagatgataccgaggagatcactgtttatgattattttgtcaaccgcagaaaaatttctctacagtactcagctgatctgccatgtattaatg |
38114774 |
T |
|
| Q |
101 |
tcgggaatccaaaacgacctacgtatttcccaattgaggtggattagctgctttattttagtttagtattaacttcagaatgtgtatt |
188 |
Q |
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| T |
38114775 |
tgggaaagccaaagcgacctacatttgtcccagttgaggtagattagttgctttatattaatttagtactaacctaataatgtgtatt |
38114862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 140
Target Start/End: Complemental strand, 43722965 - 43722860
Alignment:
| Q |
35 |
atgaatatttcgttaaccggcgaaaaattcctcttaagtattctgctcgtcttccatgtattaatgtcgggaatccaaaacgacctacgtatttcccaat |
134 |
Q |
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|||| ||||||| ||||| |||||||||| || | | || || ||| ||| ||||||||||||||| |||| ||||||||||| |||||| ||| ||| |
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| T |
43722965 |
atgactatttcgataaccagcgaaaaattgctttgcactactcagctgatctgccatgtattaatgtcaggaagccaaaacgacccacgtatgtcctaat |
43722866 |
T |
|
| Q |
135 |
tgaggt |
140 |
Q |
| |
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|||||| |
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| T |
43722865 |
tgaggt |
43722860 |
T |
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