View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4306_high_4 (Length: 456)
Name: NF4306_high_4
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4306_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 162 - 449
Target Start/End: Original strand, 8149562 - 8149845
Alignment:
| Q |
162 |
tatatgcttagcttaaaatggcatggaactgcaaagacaccaaaacggtctctaagcataggtagctcttctcaacagagtcaatatacaatgattcatt |
261 |
Q |
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| T |
8149562 |
tatatgcttagcttaaaatggcatggaaccgcaaagacacgaaaacggtctctaagcataggtagctcttctcaacagagtcaatatacaatgattcatt |
8149661 |
T |
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| Q |
262 |
agcacatgacttaaatgtaagttaagaaaattacattaacaactatagctgcatgctattgctagctagtacctgctacataagagtgtgagtttggaat |
361 |
Q |
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| T |
8149662 |
atcacatgacttaaatgtaagttaagaaaattacattaacaactatagctgcatgctattgctagctagtacctgctacataagagtgtgtgtttgtaat |
8149761 |
T |
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| Q |
362 |
ttgtatttgtaaacccccaggaatgtgccttgagaaaaagaaagaattggattcattacttaccattttgcacgctcttagatctgtg |
449 |
Q |
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| T |
8149762 |
ttgtatttgtaaacccccaggaatgtgccttgagaaaaagaaagaattggattca----ttaccattttgcacgctcttagatctgtg |
8149845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 16 - 164
Target Start/End: Original strand, 8149375 - 8149523
Alignment:
| Q |
16 |
atttgtttatctgtaaaagtgtcattgtgtacgttgaatgctcccatgacccttgctttagttcaatttgtttgtttctttacgaaaacagaggattatg |
115 |
Q |
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| T |
8149375 |
atttgtttatctgtaaaagtgtcattgtgtacgttgaatgctcccatgacccttgctttagttcaatttgtttgtttctttacgaaaacagaggattatg |
8149474 |
T |
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| Q |
116 |
tagctccaattgaggattagaaaagaataaaaacacacaatgataatat |
164 |
Q |
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| T |
8149475 |
tagctccaattgaggattagaaaagaataaaaacacacaatgataatat |
8149523 |
T |
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