View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4306_high_5 (Length: 441)
Name: NF4306_high_5
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4306_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 3e-95; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 210 - 423
Target Start/End: Original strand, 37306363 - 37306572
Alignment:
| Q |
210 |
cacaaactaaatgtttattcatgcagtttcgggaagaattaaattattagactccaaagtatattattaatcttattctacccaaactaatgaatggtaa |
309 |
Q |
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| T |
37306363 |
cacaaactacatgtttattcatacagtttcgggaagaattcaattattagactacaaagtatattattaatcttattctacccaaactaatg----gtaa |
37306458 |
T |
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| Q |
310 |
attaataatggaacgcgaatacatcatattccacaacagcatttccagtggcaaaactcacagagtaaaacttggcttgagcataaccacgtacaaatct |
409 |
Q |
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| T |
37306459 |
attaataatggaacgcgaatacatcatattccacaacagcatttccagtggcaaaactcacagagtaaaacttggcttgagcataaccacgaacaaatct |
37306558 |
T |
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| Q |
410 |
gaaagccccagttc |
423 |
Q |
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| T |
37306559 |
gaaagccccagttc |
37306572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 37306148 - 37306345
Alignment:
| Q |
18 |
agaaaatatgggacaattctataaactatgagaaggcaagcaacataatgctctaacaatacgataaactaatttatttgttactctacacaaatcctac |
117 |
Q |
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| T |
37306148 |
agaaaatatgggacaatactataaactatgagaaggcaagcaacataatgctctaacaatacgataaactaatttatttgttactctagacaaatcctac |
37306247 |
T |
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| Q |
118 |
aacatagttatgaggagataagagactttcaccacgggatatatataatgtcactataagagagataagctgaaataacctttttaaataaccacaaact |
217 |
Q |
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| T |
37306248 |
aacatagttatgaggaga---------ttcaccacggg----atataatgtcacattaagagagataagctgaaataacttttttaaataaccagaaagt |
37306334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 423
Target Start/End: Original strand, 37320448 - 37320496
Alignment:
| Q |
375 |
taaaacttggcttgagcataaccacgtacaaatctgaaagccccagttc |
423 |
Q |
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| T |
37320448 |
taaaatttagcttgagcataaccacgtacaaaacgaaaagccccagttc |
37320496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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