View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4306_high_8 (Length: 421)

Name: NF4306_high_8
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4306_high_8
NF4306_high_8
[»] chr3 (39 HSPs)
chr3 (13-407)||(11245562-11245954)
chr3 (13-304)||(10890042-10890333)
chr3 (33-305)||(8862042-8862314)
chr3 (33-304)||(11130068-11130339)
chr3 (26-305)||(11159058-11159337)
chr3 (36-305)||(11147895-11148164)
chr3 (14-308)||(10127665-10127956)
chr3 (111-308)||(13853721-13853915)
chr3 (14-298)||(10374896-10375177)
chr3 (119-308)||(13344928-13345117)
chr3 (120-308)||(10032846-10033031)
chr3 (119-308)||(13161819-13162008)
chr3 (119-308)||(13333743-13333932)
chr3 (33-263)||(9839617-9839844)
chr3 (33-263)||(9850495-9850722)
chr3 (34-263)||(10362884-10363110)
chr3 (124-253)||(10078116-10078242)
chr3 (33-250)||(10184998-10185212)
chr3 (119-263)||(10581452-10581593)
chr3 (122-308)||(10501419-10501602)
chr3 (39-313)||(10528120-10528391)
chr3 (34-299)||(10261455-10261717)
chr3 (14-263)||(10664263-10664509)
chr3 (14-88)||(10089527-10089601)
chr3 (14-88)||(10196410-10196484)
chr3 (119-305)||(13171870-13172056)
chr3 (13-290)||(10518221-10518495)
chr3 (45-302)||(11770002-11770256)
chr3 (39-313)||(10672444-10672715)
chr3 (119-263)||(13290504-13290648)
chr3 (345-407)||(11158956-11159018)
chr3 (120-176)||(10433214-10433270)
chr3 (120-176)||(11781152-11781208)
chr3 (205-263)||(10089715-10089773)
chr3 (205-263)||(10196598-10196656)
chr3 (14-88)||(10433302-10433376)
chr3 (34-88)||(11781240-11781294)
chr3 (345-405)||(8862354-8862414)
chr3 (234-310)||(13396446-13396522)
[»] chr8 (2 HSPs)
chr8 (48-309)||(11485809-11486067)
chr8 (57-308)||(44956730-44956978)
[»] chr6 (1 HSPs)
chr6 (13-310)||(31678769-31679066)
[»] scaffold0002 (3 HSPs)
scaffold0002 (119-308)||(144980-145169)
scaffold0002 (119-308)||(153285-153474)
scaffold0002 (119-305)||(134932-135118)
[»] chr2 (1 HSPs)
chr2 (43-306)||(26907663-26907920)
[»] scaffold0083 (2 HSPs)
scaffold0083 (34-263)||(56688-56914)
scaffold0083 (34-263)||(57497-57723)
[»] chr1 (1 HSPs)
chr1 (219-310)||(826844-826935)
[»] chr4 (1 HSPs)
chr4 (203-301)||(17851971-17852069)
[»] chr7 (1 HSPs)
chr7 (51-135)||(29837414-29837498)


Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 13 - 407
Target Start/End: Complemental strand, 11245954 - 11245562
Alignment:
Q  13 attctcaaggtggaaaagctatggaagaagtaggtgatgagtgctttgctgaattgttatctagatcattaattcatcaactgcatggtgattctgaagg 112  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  11245954 attctcaagatggaaaagctatggaagaagtaggtgatgagtgcttttctgaattgttatctagatcattaattcagaaactgcatggtgattctgaagg 11245855  T
Q  113 aaaaatatttgtcatgcatgaccttgttaatgatgtagctatggtcgtatcaggaaaaagttgtcacaagcttaaatttggcggtgataactctgaaaat 212  Q
    | |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11245854 acaaatatttgtcatgcatgaccttgttaatgatttagctatagtcgtatcaggaaaaagttgtcacaagcttaaatttggcggtgataactctgaaaat 11245755  T
Q  213 gttcgtcatttgtcatataatcaagaagagtatgacattgtcaagaagtttcagattctctacaaattcaaatgcttgagaagcttcctacccattggct 312  Q
    | ||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  11245754 ggtcgtcatttgtcatataatc---aagagtatgacattgtcaagaagtttcagattctctacaaattcaaatgcttgagaagctttctacccattggct 11245658  T
Q  313 tctatggttatcaatattacctaactcgaaatgtggttgttgatttgctccc-tacacttcgaaggctgcgtgtgttatcgttatcaagatatact 407  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  11245657 tctatggttatcaatattacctatcttgaaatgtggttgttgatttgctcccttacacttcgaaggctgcgtgtgttatcgttatcaagatatact 11245562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 13 - 304
Target Start/End: Original strand, 10890042 - 10890333
Alignment:
Q  13 attctcaaggtggaaaagctatggaagaagtaggtgatgagtgctttgctgaattgttatctagatcattaattcatcaactgcatggtgattctgaagg 112  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||| ||||||||||||    
T  10890042 attctcaagatggaaaagctatggaagaagtaggtgatgagtgcttttctgaattgttatctagatcattaattcagcaactgtatgatgattctgaagg 10890141  T
Q  113 aaaaatatttgtcatgcatgaccttgttaatgatgtagctatggtcgtatcaggaaaaagttgtcacaagcttaaatttggcggtgataactctgaaaat 212  Q
    | |||||||||||||||||||||||||||||||| ||||||   ||||||| ||||||| |||| | | | || ||||||| |||||   | |  |||||    
T  10890142 acaaatatttgtcatgcatgaccttgttaatgatttagctacaatcgtatctggaaaaacttgttatagggttgaatttggtggtgacgcccccaaaaat 10890241  T
Q  213 gttcgtcatttgtcatataatcaagaagagtatgacattgtcaagaagtttcagattctctacaaattcaaatgcttgagaagcttcctacc 304  Q
    ||||||||||  ||||||||||||||| ||||||||| |||||| |||||| ||||| ||||||| ||||||| |||||||| |||||||||    
T  10890242 gttcgtcattgctcatataatcaagaaaagtatgacactgtcaaaaagtttaagattttctacaagttcaaattcttgagaaccttcctacc 10890333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 33 - 305
Target Start/End: Original strand, 8862042 - 8862314
Alignment:
Q  33 atggaagaagtaggtgatgagtgctttgctgaattgttatctagatcattaattcatcaactgcatggtgattctgaaggaaaaatatttgtcatgcatg 132  Q
    |||||||| ||||||||||| || ||||||||| ||||||| |||||||||||||| ||||| |||| || | ||  || | |||  |||||||||||||    
T  8862042 atggaagatgtaggtgatgattgttttgctgaactgttatccagatcattaattcaacaactacatgttggtactagagaacaaaagtttgtcatgcatg 8862141  T
Q  133 accttgttaatgatgtagctatggtcgtatcaggaaaaagttgtcacaagcttaaatttggcggtgataactctgaaaatgttcgtcatttgtcatataa 232  Q
    |||||||||||||| ||||||   ||||||| |||||||  |||   | | || ||||||| ||||||| |||  | |||||||||||||  |||||||     
T  8862142 accttgttaatgatttagctacaatcgtatctggaaaaacatgttctagggttgaatttggtggtgatacctccaagaatgttcgtcattgctcatatag 8862241  T
Q  233 tcaagaagagtatgacattgtcaagaagtttcagattctctacaaattcaaatgcttgagaagcttcctaccc 305  Q
    ||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||| ||||||||||    
T  8862242 tcaagaagagtatgacattgtcaagaagtttaaaattttctacaaattcaaatgcttgagaaccttcctaccc 8862314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 33 - 304
Target Start/End: Complemental strand, 11130339 - 11130068
Alignment:
Q  33 atggaagaagtaggtgatgagtgctttgctgaattgttatctagatcattaattcatcaactgcatggtgattctgaaggaaaaatatttgtcatgcatg 132  Q
    |||||||||||||||||||| || ||||| ||| ||||||| || ||||||||||| ||||| |||| |||| ||  |||| |||  ||||||||||| |    
T  11130339 atggaagaagtaggtgatgattgttttgcagaactgttatccaggtcattaattcaacaactacatgttgatactagaggagaaaggtttgtcatgcacg 11130240  T
Q  133 accttgttaatgatgtagctatggtcgtatcaggaaaaagttgtcacaagcttaaatttggcggtgataactctgaaaatgttcgtcatttgtcatataa 232  Q
    |  ||||||||||  ||||||   ||||||| |||||||||||| ||| | || ||||||| |||||   |||  |||||||||||||||  ||||||||    
T  11130239 attttgttaatgacttagctacactcgtatctggaaaaagttgttacagggttgaatttggtggtgacgcctccaaaaatgttcgtcattgctcatataa 11130140  T
Q  233 tcaagaagagtatgacattgtcaagaagtttcagattctctacaaattcaaatgcttgagaagcttcctacc 304  Q
    ||||||| ||||||||| ||||||||||||| ||||| |||||||||||||||||||||||| |||||||||    
T  11130139 tcaagaaaagtatgacactgtcaagaagtttaagattttctacaaattcaaatgcttgagaaccttcctacc 11130068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 26 - 305
Target Start/End: Complemental strand, 11159337 - 11159058
Alignment:
Q  26 aaaagctatggaagaagtaggtgatgagtgctttgctgaattgttatctagatcattaattcatcaactgcatggtgattctgaaggaaaaatatttgtc 125  Q
    |||||| |||||||||||||||||||| || ||||||||||||||||| |||||||||||||| ||||| |||| || | |   |  | |||  ||||||    
T  11159337 aaaagccatggaagaagtaggtgatgattgttttgctgaattgttatccagatcattaattcaacaactacatgttggtaccagaaaacaaaagtttgtc 11159238  T
Q  126 atgcatgaccttgttaatgatgtagctatggtcgtatcaggaaaaagttgtcacaagcttaaatttggcggtgataactctgaaaatgttcgtcatttgt 225  Q
    ||||||||||||||||||||| ||||||   ||||||| || |||| |||| | | | || ||||||| ||||||| |||  | |||||||||||||  |    
T  11159237 atgcatgaccttgttaatgatttagctacaatcgtatctgggaaaacttgttatagggttgaatttggtggtgatacctccaagaatgttcgtcattgct 11159138  T
Q  226 catataatcaagaagagtatgacattgtcaagaagtttcagattctctacaaattcaaatgcttgagaagcttcctaccc 305  Q
    |||||| ||||||||||||||||||||| ||||||||| | ||| |||||||||||||||||||||||| || |||||||    
T  11159137 catatagtcaagaagagtatgacattgtgaagaagtttaaaattttctacaaattcaaatgcttgagaacctacctaccc 11159058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 36 - 305
Target Start/End: Complemental strand, 11148164 - 11147895
Alignment:
Q  36 gaagaagtaggtgatgagtgctttgctgaattgttatctagatcattaattcatcaactgcatggtgattctgaaggaaaaatatttgtcatgcatgacc 135  Q
    ||||||||||||||||| || ||||||||| ||||||| |||||||||||||| || || |||| |||| ||  |||| |||  ||||||||||| ||      
T  11148164 gaagaagtaggtgatgattgttttgctgaactgttatccagatcattaattcaacagctacatgttgatactagaggagaaaggtttgtcatgcacgatt 11148065  T
Q  136 ttgttaatgatgtagctatggtcgtatcaggaaaaagttgtcacaagcttaaatttggcggtgataactctgaaaatgttcgtcatttgtcatataatca 235  Q
    ||||||||||  ||||||   ||||||| |||||||||||| ||| | || ||||||| |||||    ||  | |||||||||||||  ||||| |||||    
T  11148064 ttgttaatgagttagctacactcgtatctggaaaaagttgttacagggttgaatttggtggtgacgcttccaagaatgttcgtcattgctcatacaatca 11147965  T
Q  236 agaagagtatgacattgtcaagaagtttcagattctctacaaattcaaatgcttgagaagcttcctaccc 305  Q
    |||  |||||||||||| |||||||||| || || || ||||| ||||||||||||||| ||||||||||    
T  11147964 agagcagtatgacattgccaagaagtttaagcttttccacaaactcaaatgcttgagaaccttcctaccc 11147895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 14 - 308
Target Start/End: Original strand, 10127665 - 10127956
Alignment:
Q  14 ttctcaaggtggaaaagctatggaagaagtaggtgatgagtgctttgctgaattgttatctagatcattaattcatcaactgcatggtgattctgaagga 113  Q
    ||||||||| |||||||   |||| ||| |||||||||| || ||||||||||||||||| |||||||||||||| ||| |    | |||| ||   |||    
T  10127665 ttctcaagggggaaaagagttggaggaattaggtgatgattgttttgctgaattgttatcgagatcattaattcaacaattaagcgatgatgctcgtgga 10127764  T
Q  114 aaaatatttgtcatgcatgaccttgttaatgatgtagctatggtcgtatcaggaaaaagttgtcacaagcttaaatttggcggtgataactctgaaaatg 213  Q
     |||  |||||||||||||||||||| |||||| || |||   ||||||||||||||||||||  || |||| ||| |||   ||| | |||||||||||    
T  10127765 gaaaagtttgtcatgcatgaccttgtcaatgatttatctacattcgtatcaggaaaaagttgttgcaggcttgaatgtgg---tgacatctctgaaaatg 10127861  T
Q  214 ttcgtcatttgtcatataatcaagaagagtatgacattgtcaagaagtttcagattctctacaaattcaaatgcttgagaagcttcctacccatt 308  Q
    ||||||| || |||||||| |||||| | ||||||||| ||| ||||||| |||   | ||||| |||||||||||| ||||||| ||| |||||    
T  10127862 ttcgtcacttctcatataaccaagaatactatgacattttcatgaagtttgagaaattatacaatttcaaatgcttgcgaagctttctatccatt 10127956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 111 - 308
Target Start/End: Complemental strand, 13853915 - 13853721
Alignment:
Q  111 ggaaaaatatttgtcatgcatgaccttgttaatgatgtagctatggtcgtatcaggaaaaagttgtcacaagcttaaatttggcggtgataactctgaaa 210  Q
    |||||||| ||| |||||||||||||||| || ||  ||||||  |||||||||||||||||||||  || |  | |||||||   ||| | |||  |||    
T  13853915 ggaaaaatctttttcatgcatgaccttgtcaacgacttagctacagtcgtatcaggaaaaagttgttgcaggtgtgaatttgg---tgacatctccaaaa 13853819  T
Q  211 atgttcgtcatttgtcatataatcaagaagagtatgacattgtcaagaagtttcagattctctacaaattcaaatgcttgagaagcttcctacccatt 308  Q
     |||||||||||| |||||||| ||||||| |||||||||| |||  |||||| |||   ||||||| |||||||||||| |||||||||||||||||    
T  13853818 ctgttcgtcatttctcatataaccaagaagtgtatgacattttcagaaagtttgagaaaatctacaatttcaaatgcttgcgaagcttcctacccatt 13853721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 14 - 298
Target Start/End: Complemental strand, 10375177 - 10374896
Alignment:
Q  14 ttctcaaggtggaaaagctatggaagaagtaggtgatgagtgctttgctgaattgttatctagatcattaattcatcaactgcatggtgattctgaagga 113  Q
    ||||||||| ||||||| | |||| ||| ||||  |||| || ||||||||||||||||  |||||||||||||| ||| |    | |||| ||   |||    
T  10375177 ttctcaagggggaaaagatttggaggaattaggcaatgattgttttgctgaattgttattgagatcattaattcaacaattaagcgatgatgcttgtgga 10375078  T
Q  114 aaaatatttgtcatgcatgaccttgttaatgatgtagctatggtcgtatcaggaaaaagttgtcacaagcttaaatttggcggtgataactctgaaaatg 213  Q
    ||||  |||||||||||||||||||| |||||| || |||   |||||||||||||||||||| ||| |||| |||   ||| ||| | | |||||||||    
T  10375077 aaaaagtttgtcatgcatgaccttgtcaatgatttatctacattcgtatcaggaaaaagttgttacaggcttgaat---gcgatgacatccctgaaaatg 10374981  T
Q  214 ttcgtcatttgtcatataatcaagaagagtatgacattgtcaagaagtttcagattctctacaaattcaaatgcttgagaagctt 298  Q
    ||||||| || |||||||| ||| ||   ||||||||| ||| ||||||| |||   | ||||| |||||||||||| |||||||    
T  10374980 ttcgtcacttctcatataaccaaaaattctatgacattttcatgaagtttgagaaattatacaatttcaaatgcttgcgaagctt 10374896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 119 - 308
Target Start/End: Original strand, 13344928 - 13345117
Alignment:
Q  119 atttgtcatgcatgaccttgttaatgatgtagctatggtcgtatcaggaaaaagttgtcacaagcttaaatttggcggtgataactctgaaaatgttcgt 218  Q
    |||||| ||||| |||||||| |||||| ||||  | || || ||||||| ||||||   || |||| ||| ||| ||| | |  ||| |||||||||||    
T  13344928 atttgttatgcacgaccttgtcaatgatttagcgttagtggtgtcaggaacaagttgcttcaggcttgaatgtggtggtaacatgtctaaaaatgttcgt 13345027  T
Q  219 catttgtcatataatcaagaagagtatgacattgtcaagaagtttcagattctctacaaattcaaatgcttgagaagcttcctacccatt 308  Q
    ||||||||||||||||||| | | || ||| || ||||||||||| || |||||||||| ||||| |||||| |||||||||||||||||    
T  13345028 catttgtcatataatcaaggaaattacgactttttcaagaagtttgaggttctctacaatttcaagtgcttgcgaagcttcctacccatt 13345117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 120 - 308
Target Start/End: Original strand, 10032846 - 10033031
Alignment:
Q  120 tttgtcatgcatgaccttgttaatgatgtagctatggtcgtatcaggaaaaagttgtcacaagcttaaatttggcggtgataactctgaaaatgttcgtc 219  Q
    |||||||||||||||||||| |||||| ||||||   || ||| |||||||||||||  || |||| ||| |||   ||| | |||||||||||||||||    
T  10032846 tttgtcatgcatgaccttgtcaatgatttagctacattcatattaggaaaaagttgttgcaggcttgaatgtgg---tgacatctctgaaaatgttcgtc 10032942  T
Q  220 atttgtcatataatcaagaagagtatgacattgtcaagaagtttcagattctctacaaattcaaatgcttgagaagcttcctacccatt 308  Q
    | || |||||||| |||||| | ||||||||| ||| ||||||| |||   | ||||| |||||||||||| ||||||| ||| |||||    
T  10032943 acttctcatataaccaagaatactatgacattttcatgaagtttgagaaattatacaatttcaaatgcttgcgaagctttctatccatt 10033031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 119 - 308
Target Start/End: Original strand, 13161819 - 13162008
Alignment:
Q  119 atttgtcatgcatgaccttgttaatgatgtagctatggtcgtatcaggaaaaagttgtcacaagcttaaatttggcggtgataactctgaaaatgttcgt 218  Q
    |||||| ||||| |||||||| |||||| ||||  | || || ||||||| ||||||   || |||| ||||||| ||| | |  ||| |||||||||||    
T  13161819 atttgttatgcacgaccttgtcaatgatttagccttagtggtgtcaggaacaagttgcttcaggcttgaatttggtggtaacatgtctaaaaatgttcgt 13161918  T
Q  219 catttgtcatataatcaagaagagtatgacattgtcaagaagtttcagattctctacaaattcaaatgcttgagaagcttcctacccatt 308  Q
    ||||| ||||||||||||| ||| || ||| || ||||||||||| || |||||||| | ||||| |||||| ||||||| |||||||||    
T  13161919 catttttcatataatcaaggagattacgactttttcaagaagtttgaggttctctacgatttcaagtgcttgcgaagctttctacccatt 13162008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 119 - 308
Target Start/End: Original strand, 13333743 - 13333932
Alignment:
Q  119 atttgtcatgcatgaccttgttaatgatgtagctatggtcgtatcaggaaaaagttgtcacaagcttaaatttggcggtgataactctgaaaatgttcgt 218  Q
    |||||| ||||| |||||||| |||||| ||||  | || || ||||||| ||||||   || |||| ||||||| ||| | |  ||| |||||||||||    
T  13333743 atttgttatgcacgaccttgtcaatgatttagccttagtggtgtcaggaacaagttgcttcaggcttgaatttggtggtaacatgtctaaaaatgttcgt 13333842  T
Q  219 catttgtcatataatcaagaagagtatgacattgtcaagaagtttcagattctctacaaattcaaatgcttgagaagcttcctacccatt 308  Q
    ||||| ||||||||||||| ||| || ||| || ||||||||||| || |||||||| | ||||| |||||| ||||||| |||||||||    
T  13333843 catttttcatataatcaaggagattacgactttttcaagaagtttgaggttctctacgatttcaagtgcttgcgaagctttctacccatt 13333932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 263
Target Start/End: Original strand, 9839617 - 9839844
Alignment:
Q  33 atggaagaagtaggtgatgagtgctttgctgaattgttatctagatcattaattcatcaact--gc-atggtgattctgaaggaaaaatatttgtcatgc 129  Q
    ||||| ||| |||||||||| || ||||||||||||||||| ||||| |||||||| ||| |  || ||| ||||  ||  ||||||||  |||||||||    
T  9839617 atggaggaattaggtgatgattgttttgctgaattgttatcgagatcgttaattcaacaattaagcgatgatgatcgtgg-ggaaaaat--ttgtcatgc 9839713  T
Q  130 atgaccttgttaatgatgtagctatggtcgtatcaggaaaaagttgtcacaagcttaaatttggcggtgataactctgaaaatgttcgtcatttgtcata 229  Q
    |||||||||| |||||| ||||||   ||||||||||||||||||||  || |||| |||   | ||||| | | |||||||||||||||| || |||||    
T  9839714 atgaccttgtcaatgatttagctacattcgtatcaggaaaaagttgttgcaggcttgaat---gtggtgacatccctgaaaatgttcgtcacttctcata 9839810  T
Q  230 taatcaagaagagtatgacattgtcaagaagttt 263  Q
    ||| |||||| | || |||||| ||| |||||||    
T  9839811 taaccaagaaaactacgacattttcatgaagttt 9839844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 263
Target Start/End: Original strand, 9850495 - 9850722
Alignment:
Q  33 atggaagaagtaggtgatgagtgctttgctgaattgttatctagatcattaattcatcaact--gc-atggtgattctgaaggaaaaatatttgtcatgc 129  Q
    ||||| ||| |||||||||| || ||||||||||||||||| ||||| |||||||| ||| |  || ||| ||||  ||  ||||||||  |||||||||    
T  9850495 atggaggaattaggtgatgattgttttgctgaattgttatcgagatcgttaattcaacaattaagcgatgatgatcgtgg-ggaaaaat--ttgtcatgc 9850591  T
Q  130 atgaccttgttaatgatgtagctatggtcgtatcaggaaaaagttgtcacaagcttaaatttggcggtgataactctgaaaatgttcgtcatttgtcata 229  Q
    |||||||||| |||||| ||||||   ||||||||||||||||||||  || |||| |||   | ||||| | | |||||||||||||||| || |||||    
T  9850592 atgaccttgtcaatgatttagctacattcgtatcaggaaaaagttgttgcaggcttgaat---gtggtgacatccctgaaaatgttcgtcacttctcata 9850688  T
Q  230 taatcaagaagagtatgacattgtcaagaagttt 263  Q
    ||| |||||| | || |||||| ||| |||||||    
T  9850689 taaccaagaaaactacgacattttcatgaagttt 9850722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 34 - 263
Target Start/End: Complemental strand, 10363110 - 10362884
Alignment:
Q  34 tggaagaagtaggtgatgagtgctttgctgaattgttatctagatcattaattcatcaact--gca-tggtgattctgaaggaaaaatatttgtcatgca 130  Q
    |||| ||| |||||||||| || ||||||||||||||||| ||||| |||||||| ||| |  ||| || ||||  ||  ||||||||  ||||||||||    
T  10363110 tggaggaattaggtgatgattgttttgctgaattgttatcgagatcgttaattcaacaattaagcaatgatgatcgtgg-ggaaaaat--ttgtcatgca 10363014  T
Q  131 tgaccttgttaatgatgtagctatggtcgtatcaggaaaaagttgtcacaagcttaaatttggcggtgataactctgaaaatgttcgtcatttgtcatat 230  Q
    |||||||||||||||| |||| |   ||||||||||||||||||||  || |||| |||   | ||||| | |  ||||||||||||||| || ||||||    
T  10363013 tgaccttgttaatgatttagcaacattcgtatcaggaaaaagttgttgcaggcttgaat---gtggtgacatccttgaaaatgttcgtcacttctcatat 10362917  T
Q  231 aatcaagaagagtatgacattgtcaagaagttt 263  Q
    || |||||| | ||||||||| ||| |||||||    
T  10362916 aaccaagaatactatgacattttcatgaagttt 10362884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 124 - 253
Target Start/End: Original strand, 10078116 - 10078242
Alignment:
Q  124 tcatgcatgaccttgttaatgatgtagctatggtcgtatcaggaaaaagttgtcacaagcttaaatttggcggtgataactctgaaaatgttcgtcattt 223  Q
    |||||||||||||||| |||||| | ||||  |||||||| ||||||||||||  || | || ||| |||   ||||| ||||||||||||||||||| |    
T  10078116 tcatgcatgaccttgtcaatgatttggctacagtcgtatctggaaaaagttgttgcaggtttgaatgtgg---tgatatctctgaaaatgttcgtcatgt 10078212  T
Q  224 gtcatataatcaagaagagtatgacattgt 253  Q
     ||||||| ||||||||||||||| |||||    
T  10078213 ttcatatattcaagaagagtatgatattgt 10078242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 33 - 250
Target Start/End: Original strand, 10184998 - 10185212
Alignment:
Q  33 atggaagaagtaggtgatgagtgctttgctgaattgttatctagatcattaattcatcaactgcatggtgattctgaaggaaaaatatttgtcatgcatg 132  Q
    ||||||||| |||||||||| |||||||||||||| || || ||||| |||||||| |||    ||| | ||  |   ||| |||  ||| |||||||||    
T  10184998 atggaagaattaggtgatgattgctttgctgaattattgtccagatccttaattcaacaatcaaatgataatggtcgtggagaaaagtttttcatgcatg 10185097  T
Q  133 accttgttaatgatgtagctatggtcgtatcaggaaaaagttgtcacaagcttaaatttggcggtgataactctgaaaatgttcgtcatttgtcatataa 232  Q
    ||||||| |||||| | ||||  |||||||| ||||||||||||  || | || ||| |||   | ||| ||||||||||||||||||| | |||||||     
T  10185098 accttgtcaatgatttggctacagtcgtatctggaaaaagttgttgcaggtttgaatgtgg---taatatctctgaaaatgttcgtcatgtttcatatat 10185194  T
Q  233 tcaagaagagtatgacat 250  Q
    ||||||||||||||||||    
T  10185195 tcaagaagagtatgacat 10185212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 119 - 263
Target Start/End: Original strand, 10581452 - 10581593
Alignment:
Q  119 atttgtcatgcatgaccttgttaatgatgtagctatggtcgtatcaggaaaaagttgtcacaagcttaaatttggcggtgataactctgaaaatgttcgt 218  Q
    ||||||||||||||||||||| |||||| ||||||   ||||||||||||||||||||  || |||| |||   | ||||| | | ||||||||||||||    
T  10581452 atttgtcatgcatgaccttgtcaatgatttagctacattcgtatcaggaaaaagttgttgcaggcttgaat---gtggtgacatccctgaaaatgttcgt 10581548  T
Q  219 catttgtcatataatcaagaagagtatgacattgtcaagaagttt 263  Q
    || || |||||||| |||||| | | ||||||| ||| |||||||    
T  10581549 cacttctcatataaccaagaatactttgacattttcatgaagttt 10581593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 122 - 308
Target Start/End: Original strand, 10501419 - 10501602
Alignment:
Q  122 tgtcatgcatgaccttgttaatgatgtagctatggtcgtatcaggaaaaagttgtcacaagcttaaatttggcggtgataactctgaaaatgttcgtcat 221  Q
    ||||||||||||||||||||||||| |||| |   || |||||||||||||||||  || | || ||| |||   | | |  ||| ||||| | || |||    
T  10501419 tgtcatgcatgaccttgttaatgatttagcaacattcatatcaggaaaaagttgttgcaggtttgaatgtgg---taacatttctaaaaatatccgccat 10501515  T
Q  222 ttgtcatataatcaagaagagtatgacattgtcaagaagtttcagattctctacaaattcaaatgcttgagaagcttcctacccatt 308  Q
    ||||||||||| ||| | |||||||||| | ||| ||||||  ||| | ||||||| |||||||||||| |||||||||||||||||    
T  10501516 ttgtcatataaccaaaaggagtatgacaatttcatgaagttgaagaatttctacaatttcaaatgcttgcgaagcttcctacccatt 10501602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 39 - 313
Target Start/End: Original strand, 10528120 - 10528391
Alignment:
Q  39 gaagtaggtgatgagtgctttgctgaattgttatctagatcattaattcatcaactgcatggtgattctgaaggaaaaatatttgtcatgcatgaccttg 138  Q
    |||||||||||||| ||||||||||||||||| || ||||| |||||||| |||    ||  || |  |   |||||||  ||| |||||||||||||||    
T  10528120 gaagtaggtgatgactgctttgctgaattgttgtccagatccttaattcagcaatcaaatcatgttggtcgtggaaaaaagtttttcatgcatgaccttg 10528219  T
Q  139 ttaatgatgtagctatggtcgtatcaggaaaaagttgtcacaagcttaaatttggcggtgataactctgaaaatgttcgtcatttgtcatataatcaaga 238  Q
    | || ||| ||||||   ||||||| |||||||||||| ||| |||| |||   | ||| ||  |||| ||||||| |  |||||||||||||  |||||    
T  10528220 tcaacgatttagctacaatcgtatctggaaaaagttgttacaggcttgaat---gtggtaatgtctctaaaaatgtcctccatttgtcatatacccaaga 10528316  T
Q  239 agagtatgacattgtcaagaagtttcagattctctacaaattcaaatgcttgagaagcttcctacccattggctt 313  Q
    || |||||||||| ||| ||||||| | | | || |||| || ||||||||| |||||||| | |||||| ||||    
T  10528317 agtgtatgacattttcatgaagtttaaaagtttcaacaattttaaatgcttgtgaagcttcatgcccatttgctt 10528391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 34 - 299
Target Start/End: Original strand, 10261455 - 10261717
Alignment:
Q  34 tggaagaagtaggtgatgagtgctttgctgaattgttatctagatcattaattcatcaactgcatggtgattctgaaggaaaaatatttgtcatgcatga 133  Q
    |||| ||| |||| ||||| || ||||||||||||||||| ||||| |||||||| ||| |    | |||| ||   ||| |||  ||||||||||||||    
T  10261455 tggaggaattaggcgatgattgttttgctgaattgttatcgagatcgttaattcaacaattaagcgatgatgctcgtggagaaaagtttgtcatgcatga 10261554  T
Q  134 ccttgttaatgatgtagctatggtcgtatcaggaaaaagttgtcacaagcttaaatttggcggtgataactctgaaaatgttcgtcatttgtcatataat 233  Q
    |||||| | |||| ||||||  || ||||| |||||||||||   || |||| ||| |||   ||| | | |||||||||||||||| || ||||||||     
T  10261555 ccttgtcagtgatttagctacagttgtatcgggaaaaagttgctgcaggcttgaatgtgg---tgacatcactgaaaatgttcgtcacttctcatataac 10261651  T
Q  234 caagaagagtatgacattgtcaagaagtttcagattctctacaaattcaaatgcttgagaagcttc 299  Q
    |||||| | ||||||||| ||| ||||||| |||   |  |||| |||||||||||| ||||||||    
T  10261652 caagaatactatgacattttcatgaagtttgagaaattacacaacttcaaatgcttgcgaagcttc 10261717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 14 - 263
Target Start/End: Original strand, 10664263 - 10664509
Alignment:
Q  14 ttctcaaggtggaaaagctatggaagaagtaggtgatgagtgctttgctgaattgttatctagatcattaattcatcaactgcatggtgattctgaagga 113  Q
    ||||||||| || ||| | ||||| ||| |||||||||| || ||||||||||||||||| ||||| |||||||| |||      | |||| || | ||     
T  10664263 ttctcaaggggggaaaacaatggaggaattaggtgatgattgttttgctgaattgttatcgagatctttaattcaacaatcaagcgatgatgctcatggc 10664362  T
Q  114 aaaatatttgtcatgcatgaccttgttaatgatgtagctatggtcgtatcaggaaaaagttgtcacaagcttaaatttggcggtgataactctgaaaatg 213  Q
     |||  ||||| |||||||||||| | |||||| ||||||   ||||||||||||||| ||||  || |||| |||   | ||||| |   |||||||||    
T  10664363 gaaaagtttgtgatgcatgaccttatcaatgatttagctacattcgtatcaggaaaaatttgttgcaggcttgaat---gtggtgacatgcctgaaaatg 10664459  T
Q  214 ttcgtcatttgtcatataatcaagaagagtatgacattgtcaagaagttt 263  Q
    ||||||| || |||||||| |||||||| ||||||||| ||| |||||||    
T  10664460 ttcgtcacttctcatataaccaagaagactatgacattttcatgaagttt 10664509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 10089527 - 10089601
Alignment:
Q  14 ttctcaaggtggaaaagctatggaagaagtaggtgatgagtgctttgctgaattgttatctagatcattaattca 88  Q
    |||||| || |||||||| ||||| ||| |||||||||| |||||||||||||||||||| ||||| ||||||||    
T  10089527 ttctcatgggggaaaagcgatggaggaattaggtgatgattgctttgctgaattgttatcgagatcgttaattca 10089601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 10196410 - 10196484
Alignment:
Q  14 ttctcaaggtggaaaagctatggaagaagtaggtgatgagtgctttgctgaattgttatctagatcattaattca 88  Q
    |||||| || |||||||| ||||| ||| |||||||||| |||||||||||||||||||| ||||| ||||||||    
T  10196410 ttctcatgggggaaaagcgatggaggaattaggtgatgattgctttgctgaattgttatcgagatcgttaattca 10196484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 119 - 305
Target Start/End: Original strand, 13171870 - 13172056
Alignment:
Q  119 atttgtcatgcatgaccttgttaatgatgtagctatggtcgtatcaggaaaaagttgtcacaagcttaaatttggcggtgataactctgaaaatgttcgt 218  Q
    |||||| |||||||||||||| |||||| ||||  | || || ||||||| ||||||   || |||| ||| ||| ||| | |  ||| ||||||| |||    
T  13171870 atttgttatgcatgaccttgtcaatgatttagccttagtggtgtcaggaacaagttgcttcaggcttgaatgtggtggtaacatgtctaaaaatgtacgt 13171969  T
Q  219 catttgtcatataatcaagaagagtatgacattgtcaagaagtttcagattctctacaaattcaaatgcttgagaagcttcctaccc 305  Q
    ||||||||||||||||||| | | || ||| || ||||||||||| || |||||||| | |||||||| ||| | ||||| ||||||    
T  13171970 catttgtcatataatcaaggatattacgactttttcaagaagtttgaggttctctacgatttcaaatggttgcggagctttctaccc 13172056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 290
Target Start/End: Original strand, 10518221 - 10518495
Alignment:
Q  13 attctcaaggtggaaaagctatggaagaagtaggtgatgagtgctttgctgaattgttatctagatcattaattcatcaactgcatggtgattctgaagg 112  Q
    ||||||||| || ||| || ||||| ||| | |||||||| || ||||||||||| ||||| |||||||||||||| ||| |      |||| || | |     
T  10518221 attctcaagatgaaaatgcgatggaggaaattggtgatgattgttttgctgaattattatcaagatcattaattcaacaattaagcaatgatgctcatga 10518320  T
Q  113 aaaaatatttgtcatgcatgaccttgttaatgatgtagctatggtcgtatcaggaaaaagttgtcacaagcttaaatttggcggtgataactctgaaaat 212  Q
    |||||  | ||||||||||||||||||  | ||| ||||||   |||| |||||||||||||||  || |||| |||   | ||||| | | |||||||     
T  10518321 aaaaaagtgtgtcatgcatgaccttgtccacgatttagctacattcgtctcaggaaaaagttgttgcaggcttgaat---gtggtgacatccctgaaaag 10518417  T
Q  213 gttcgtcatttgtcatataatcaagaagagtatgacattgtcaagaagtttcagattctctacaaattcaaatgcttg 290  Q
    |||||||| || |||||||| |||||| | ||||||||| ||| ||||||| |||   | ||||| ||||||||||||    
T  10518418 gttcgtcacttctcatataaccaagaatactatgacattttcatgaagtttgagaaattatacaatttcaaatgcttg 10518495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 302
Target Start/End: Original strand, 11770002 - 11770256
Alignment:
Q  45 ggtgatgagtgctttgctgaattgttatctagatcattaattcatcaactgcatggtgattctgaaggaaaaatatttgtcatgcatgaccttgttaatg 144  Q
    |||||||| || ||||||||||||||||| ||||| |||||||| ||| |   || |||| ||   ||| |||  ||||| |||||||||||||| ||||    
T  11770002 ggtgatgattggtttgctgaattgttatcgagatcgttaattcaacaattaagtgatgatgctcgtggagaaaagtttgttatgcatgaccttgtaaatg 11770101  T
Q  145 atgtagctatggtcgtatcaggaaaaagttgtcacaagcttaaatttggcggtgataactctgaaaatgttcgtcatttgtcatataatcaagaagagta 244  Q
    || ||||||   || |||||||||||||||||  || |||| |||   | ||||| | |  | ||||||||||||| || |||||||| |||||| | ||    
T  11770102 atttagctacattcatatcaggaaaaagttgttgcaggcttgaat---gtggtgacatccataaaaatgttcgtcacttctcatataaccaagaatacta 11770198  T
Q  245 tgacattgtcaagaagtttcagattctctacaaattcaaatgcttgagaagcttccta 302  Q
    ||||||| |||  |||||| |||   | || |  |||||||||||| |||||||||||    
T  11770199 tgacattttcatcaagtttgagaaattatatagcttcaaatgcttgcgaagcttccta 11770256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 313
Target Start/End: Original strand, 10672444 - 10672715
Alignment:
Q  39 gaagtaggtgatgagtgctttgctgaattgttatctagatcattaattcatcaactgcatggtgattctgaaggaaaaatatttgtcatgcatgaccttg 138  Q
    |||||||||||||| ||||||||||||||||| || ||||| |||||||| |||    ||| || |  |   |||||||  ||| |||| |||||||||     
T  10672444 gaagtaggtgatgactgctttgctgaattgttgtccagatccttaattcagcaatcaaatgatgttggtcgtggaaaaaagtttttcatacatgacctta 10672543  T
Q  139 ttaatgatgtagctatggtcgtatcaggaaaaagttgtcacaagcttaaatttggcggtgataactctgaaaatgttcgtcatttgtcatataatcaaga 238  Q
    | || ||| || |||  |||||||| ||||||||||||  || |||| |||   | ||| ||  |||| ||||||| |  |||||||||||||  |||||    
T  10672544 tcaacgatttaactacagtcgtatctggaaaaagttgttccaggcttgaat---gtggtaatgtctctaaaaatgtcctccatttgtcatatacccaaga 10672640  T
Q  239 agagtatgacattgtcaagaagtttcagattctctacaaattcaaatgcttgagaagcttcctacccattggctt 313  Q
    || |||||||||| ||| ||||||| | | | || |||| || ||||||||| |||||||| | |||||| ||||    
T  10672641 agtgtatgacattttcatgaagtttaaaagtttcaacaattttaaatgcttgtgaagcttcatgcccatttgctt 10672715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 263
Target Start/End: Original strand, 13290504 - 13290648
Alignment:
Q  119 atttgtcatgcatgaccttgttaatgatgtagctatggtcgtatcaggaaaaagttgtcacaagcttaaatttggcggtgataactctgaaaatgttcgt 218  Q
    |||||| ||||| |||||||| |||||| ||||  | || || ||||||| ||||||   || |||| ||| ||| ||| | |  ||| |||||||||||    
T  13290504 atttgttatgcacgaccttgtcaatgatttagccttagtggtgtcaggaacaagttgcttcaggcttgaatgtggtggtaacatgtctaaaaatgttcgt 13290603  T
Q  219 catttgtcatataatcaagaagagtatgacattgtcaagaagttt 263  Q
    ||||| ||||||||||||| || ||||||| || |||||||||||    
T  13290604 catttttcatataatcaaggagtgtatgactttctcaagaagttt 13290648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 407
Target Start/End: Complemental strand, 11159018 - 11158956
Alignment:
Q  345 gtggttgttgatttgctccctacacttcgaaggctgcgtgtgttatcgttatcaagatatact 407  Q
    ||||||| ||||||||| || ||| || ||||| |||||||||| ||||||||||||||||||    
T  11159018 gtggttgatgatttgctacccacatttggaaggttgcgtgtgttgtcgttatcaagatatact 11158956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 176
Target Start/End: Complemental strand, 10433270 - 10433214
Alignment:
Q  120 tttgtcatgcatgaccttgttaatgatgtagctatggtcgtatcaggaaaaagttgt 176  Q
    |||||||||||||||||||| |||||| || |||   ||||||||||||||||||||    
T  10433270 tttgtcatgcatgaccttgtcaatgatttatctacattcgtatcaggaaaaagttgt 10433214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 176
Target Start/End: Complemental strand, 11781208 - 11781152
Alignment:
Q  120 tttgtcatgcatgaccttgttaatgatgtagctatggtcgtatcaggaaaaagttgt 176  Q
    |||||||||||||||||||| |||||| ||||||   ||||||||| ||||||||||    
T  11781208 tttgtcatgcatgaccttgtcaatgatttagctacattcgtatcagcaaaaagttgt 11781152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 263
Target Start/End: Original strand, 10089715 - 10089773
Alignment:
Q  205 ctgaaaatgttcgtcatttgtcatataatcaagaagagtatgacattgtcaagaagttt 263  Q
    ||||||| ||||||||| | |||||||||||||||  |||||||||| ||| |||||||    
T  10089715 ctgaaaaggttcgtcatgtttcatataatcaagaactgtatgacattttcatgaagttt 10089773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 263
Target Start/End: Original strand, 10196598 - 10196656
Alignment:
Q  205 ctgaaaatgttcgtcatttgtcatataatcaagaagagtatgacattgtcaagaagttt 263  Q
    ||||||| ||||||||| | |||||||||||||||  |||||||||| ||| |||||||    
T  10196598 ctgaaaaggttcgtcatgtttcatataatcaagaactgtatgacattttcatgaagttt 10196656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 10433376 - 10433302
Alignment:
Q  14 ttctcaaggtggaaaagctatggaagaagtaggtgatgagtgctttgctgaattgttatctagatcattaattca 88  Q
    ||||||||| |||||||   |||| ||| ||||| |||| || ||||||||||||||||| ||||| ||||||||    
T  10433376 ttctcaagggggaaaagagttggaggaattaggtaatgattgttttgctgaattgttatcgagatcgttaattca 10433302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 11781294 - 11781240
Alignment:
Q  34 tggaagaagtaggtgatgagtgctttgctgaattgttatctagatcattaattca 88  Q
    |||| ||||| |||||||| || ||||||||||||||||| ||||| ||||||||    
T  11781294 tggaggaagttggtgatgattgttttgctgaattgttatcaagatcgttaattca 11781240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 8862354 - 8862414
Alignment:
Q  345 gtggttgttgatttgctccctacacttcgaaggctgcgtgtgttatcgttatcaagatata 405  Q
    ||||||| ||||||||| || ||| || ||||| ||||||||||||| ||||||| |||||    
T  8862354 gtggttgatgatttgctacccacatttggaaggttgcgtgtgttatcattatcaaaatata 8862414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 13396446 - 13396522
Alignment:
Q  234 caagaagagtatgacattgtcaagaagtttcagattctctacaaattcaaatgcttgagaagcttcctacccattgg 310  Q
    ||||| |||||||||||| |||| |||||| |||   ||| | | |||||||||||| |||| ||||||||||||||    
T  13396446 caagaggagtatgacattttcaataagtttgagacattcttcgatttcaaatgcttgcgaagtttcctacccattgg 13396522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 48 - 309
Target Start/End: Original strand, 11485809 - 11486067
Alignment:
Q  48 gatgagtgctttgctgaattgttatctagatcattaattcatcaactgcatggtgattctgaaggaaaaatatttgtcatgcatgaccttgttaatgatg 147  Q
    ||||| || ||||||||||||||||||||||| |||||||| |||    ||| |||| || | ||| |||  |||||||||||||||||||| ||||||     
T  11485809 gatgattgttttgctgaattgttatctagatcgttaattcaacaatcaaatgatgatgctcatggagaaaagtttgtcatgcatgaccttgtcaatgatt 11485908  T
Q  148 tagctatggtcgtatcaggaaaaagttgtcacaagcttaaatttggcggtgataactctgaaaatgttcgtcatttgtcatataatcaagaagagtatga 247  Q
    ||||||   || |||||||||||||||||  ||  ||| ||| |||   | | | |||| ||||| ||||||||||||||||||||||||||| |  |||    
T  11485909 tagctacattcatatcaggaaaaagttgttgcagacttgaatgtgg---taacatctctaaaaatattcgtcatttgtcatataatcaagaagtgcgtga 11486005  T
Q  248 cattgtcaagaagtttcagattctctacaaattcaaatgcttgagaagcttcctacccattg 309  Q
    |||| ||| ||||||| ||| | ||||||| |||||||||||| ||||||||||||||||||    
T  11486006 cattttcatgaagtttaagaatttctacaatttcaaatgcttgcgaagcttcctacccattg 11486067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 57 - 308
Target Start/End: Complemental strand, 44956978 - 44956730
Alignment:
Q  57 tttgctgaattgttatctagatcattaattcatcaactgcatggtgattctgaaggaaaaatatttgtcatgcatgaccttgttaatgatgtagctatgg 156  Q
    ||||||||||||||||||||||| |||||||| ||| |   || |||| || | ||| |||  |||||||||||||||||||| || ||| ||||||       
T  44956978 tttgctgaattgttatctagatccttaattcaacaattaagtgatgatactcatggagaaaagtttgtcatgcatgaccttgtcaacgatttagctacat 44956879  T
Q  157 tcgtatcaggaaaaagttgtcacaagcttaaatttggcggtgataactctgaaaatgttcgtcatttgtcatataatcaagaagagtatgacattgtcaa 256  Q
    || ||||||||||| |||||   | |||| ||| |||   | | | ||||||||||||||| |||||||||||||| |||||||||||||||||| |||     
T  44956878 tcatatcaggaaaatgttgttctaggcttgaatgtgg---tcacatctctgaaaatgttcgccatttgtcatataaccaagaagagtatgacattttcat 44956782  T
Q  257 gaagtttcagattctctacaaattcaaatgcttgagaagcttcctacccatt 308  Q
    ||||||| ||| | ||||||| ||||||| |||| |||||||| ||||||||    
T  44956781 gaagtttaagaatttctacaatttcaaatccttgcgaagcttcttacccatt 44956730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 13 - 310
Target Start/End: Complemental strand, 31679066 - 31678769
Alignment:
Q  13 attctcaaggtggaaaagctatggaagaagtaggtgatgagtgctttgctgaattgttatctagatcattaattcatcaactgcatggtgattctgaagg 112  Q
    |||||||||| | |||||| ||||| ||||| |||||||| | ||||| |||||||||||||||||| |||||||| |||  ||| | ||||| || | |    
T  31679066 attctcaaggagaaaaagcaatggaggaagttggtgatgactactttgttgaattgttatctagatcgttaattcaacaatcgcacgatgattttggaag 31678967  T
Q  113 aaaaatatttgtcatgcatgaccttgttaatgatgtagctatggtcgtatcaggaaaaagttgtcacaagcttaaatttggcggtgataactctgaaaat 212  Q
    | | |  ||| |||||||||| ||||| |||||| ||||||   | ||||| ||||||||||||  || || | ||  ||| ||  | | ||||||||||    
T  31678966 acagaagtttctcatgcatgatcttgtcaatgatttagctacaattgtatctggaaaaagttgttgcaggcgtgaacatggtggcaacatctctgaaaat 31678867  T
Q  213 gttcgtcatttgtcatataatcaagaagagtatgacattgtcaagaagtttcagattctctacaaattcaaatgcttgagaagcttcctacccattgg 310  Q
    || || ||||| |||||||| |||||||||||||||||| ||||||||||| | ||| | ||  | |||||||||||| ||||||| || ||||||||    
T  31678866 gtccgccatttttcatataaccaagaagagtatgacattttcaagaagtttgaaattttttatgatttcaaatgcttgcgaagctttcttcccattgg 31678769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 119 - 308
Target Start/End: Complemental strand, 145169 - 144980
Alignment:
Q  119 atttgtcatgcatgaccttgttaatgatgtagctatggtcgtatcaggaaaaagttgtcacaagcttaaatttggcggtgataactctgaaaatgttcgt 218  Q
    |||||| ||||| |||||||| |||||| ||||  | || || ||||||| ||||||   || |||| ||||||| ||| | |  ||| |||||||||||    
T  145169 atttgttatgcacgaccttgtcaatgatttagccttagtggtgtcaggaacaagttgcttcaggcttgaatttggtggtaacatgtctaaaaatgttcgt 145070  T
Q  219 catttgtcatataatcaagaagagtatgacattgtcaagaagtttcagattctctacaaattcaaatgcttgagaagcttcctacccatt 308  Q
    ||||| ||||||||||||| ||| || ||| || ||||||||||| || |||||||| | ||||| |||||| ||||||| |||||||||    
T  145069 catttttcatataatcaaggagattacgactttttcaagaagtttgaggttctctacgatttcaagtgcttgcgaagctttctacccatt 144980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 119 - 308
Target Start/End: Complemental strand, 153474 - 153285
Alignment:
Q  119 atttgtcatgcatgaccttgttaatgatgtagctatggtcgtatcaggaaaaagttgtcacaagcttaaatttggcggtgataactctgaaaatgttcgt 218  Q
    |||||| ||||| |||||||| |||||| ||||  | || || ||||||| ||||||   || |||| ||||||| ||| | |  ||| |||||||||||    
T  153474 atttgttatgcacgaccttgtcaatgatttagccttagtggtgtcaggaacaagttgcttcaggcttgaatttggtggtaacatgtctaaaaatgttcgt 153375  T
Q  219 catttgtcatataatcaagaagagtatgacattgtcaagaagtttcagattctctacaaattcaaatgcttgagaagcttcctacccatt 308  Q
    ||||| ||||||||||||| ||| || ||| || ||||||||||| || |||||||| | ||||| |||||| ||||||| |||||||||    
T  153374 catttttcatataatcaaggagattacgactttttcaagaagtttgaggttctctacgatttcaagtgcttgcgaagctttctacccatt 153285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 119 - 305
Target Start/End: Complemental strand, 135118 - 134932
Alignment:
Q  119 atttgtcatgcatgaccttgttaatgatgtagctatggtcgtatcaggaaaaagttgtcacaagcttaaatttggcggtgataactctgaaaatgttcgt 218  Q
    |||||| |||||||||||||| |||||| ||||  | || || ||||||| ||||||   || |||| ||| ||| ||| | |  ||| ||||||| |||    
T  135118 atttgttatgcatgaccttgtcaatgatttagccttagtggtgtcaggaacaagttgcttcaggcttgaatgtggtggtaacatgtctaaaaatgtacgt 135019  T
Q  219 catttgtcatataatcaagaagagtatgacattgtcaagaagtttcagattctctacaaattcaaatgcttgagaagcttcctaccc 305  Q
    ||||||||||||||||||| | | || ||| || ||||||||||| || |||||||| | |||||||| ||| | ||||| ||||||    
T  135018 catttgtcatataatcaaggatattacgactttttcaagaagtttgaggttctctacgatttcaaatggttgcggagctttctaccc 134932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 43 - 306
Target Start/End: Original strand, 26907663 - 26907920
Alignment:
Q  43 taggtgatgagtgctttgctgaattgttatctagatcattaattcatcaactgcatggtgattctgaaggaaaaatatttgtcatgcatgaccttgttaa 142  Q
    |||||||||| | ||||||||||||| |||| ||||| |||||||| |||    ||| |||| ||   ||  |||  |||||||||||||||||||| ||    
T  26907663 taggtgatgatttctttgctgaattgctatccagatccttaattcaacaatcaaatgatgatgctcgtggggaaaagtttgtcatgcatgaccttgtcaa 26907762  T
Q  143 tgatgtagctatggtcgtatcaggaaaaagttgtcacaagcttaaatttggcggtgataactctgaaaatgttcgtcatttgtcatataatcaagaagag 242  Q
    |||| ||||||   ||||||| ||||||||||||  || | || ||| ||| |      || ||||||| ||||||||| | ||||||||||||||||||    
T  26907763 tgatttagctacaatcgtatctggaaaaagttgttgcaggtttgaatgtggtg------acactgaaaaggttcgtcatgtttcatataatcaagaagag 26907856  T
Q  243 tatgacattgtcaagaagtttcagattctctacaaattcaaatgcttgagaagcttcctaccca 306  Q
    ||||||  | ||| ||||||| ||  | ||||||  |||||||||||| |||||||||||||||    
T  26907857 tatgaccatttcacgaagtttaagcctttctacagtttcaaatgcttgcgaagcttcctaccca 26907920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 263
Target Start/End: Complemental strand, 56914 - 56688
Alignment:
Q  34 tggaagaagtaggtgatgagtgctttgctgaattgttatctagatcattaattcatcaact--gc-atggtgattctgaaggaaaaatatttgtcatgca 130  Q
    |||| ||| |||||||||| || ||||||||||||||||| ||||| |||||||| ||| |  || ||| ||||  ||  ||||||||  ||||||||||    
T  56914 tggaggaattaggtgatgattgttttgctgaattgttatcgagatcgttaattcaacaattaagcgatgatgatcgtgg-ggaaaaat--ttgtcatgca 56818  T
Q  131 tgaccttgttaatgatgtagctatggtcgtatcaggaaaaagttgtcacaagcttaaatttggcggtgataactctgaaaatgttcgtcatttgtcatat 230  Q
    ||||||| | |||||| ||||||   ||||||||||||||||||||  || |||| |||   | ||||| | |  ||||||||||||||| || ||||||    
T  56817 tgaccttatcaatgatttagctacattcgtatcaggaaaaagttgttgcaggcttgaat---gtggtgacatccttgaaaatgttcgtcacttctcatat 56721  T
Q  231 aatcaagaagagtatgacattgtcaagaagttt 263  Q
    || |||||  | ||||||||| ||| |||||||    
T  56720 aaccaagagtactatgacattttcatgaagttt 56688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 263
Target Start/End: Complemental strand, 57723 - 57497
Alignment:
Q  34 tggaagaagtaggtgatgagtgctttgctgaattgttatctagatcattaattcatcaact--gc-atggtgattctgaaggaaaaatatttgtcatgca 130  Q
    |||| ||| |||||||||| || ||||||||||||||||| ||||| |||||||| ||| |  || ||| ||||  ||  ||||||||  ||||||||||    
T  57723 tggaggaattaggtgatgattgttttgctgaattgttatcgagatcgttaattcaacaattaagcgatgatgatcgtgg-ggaaaaat--ttgtcatgca 57627  T
Q  131 tgaccttgttaatgatgtagctatggtcgtatcaggaaaaagttgtcacaagcttaaatttggcggtgataactctgaaaatgttcgtcatttgtcatat 230  Q
    ||||||| | |||||| ||||||   ||||||||||||||||||||  || |||| |||   | ||||| | |  ||||||||||||||| || ||||||    
T  57626 tgaccttttcaatgatttagctacattcgtatcaggaaaaagttgttgcaggcttgaat---gtggtgacatccttgaaaatgttcgtcacttctcatat 57530  T
Q  231 aatcaagaagagtatgacattgtcaagaagttt 263  Q
    || |||||  | ||||||||| ||| |||||||    
T  57529 aaccaagagtactatgacattttcatgaagttt 57497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 310
Target Start/End: Original strand, 826844 - 826935
Alignment:
Q  219 catttgtcatataatcaagaagagtatgacattgtcaagaagtttcagattctctacaaattcaaatgcttgagaagcttcctacccattgg 310  Q
    ||||| ||||| |||||||| |||||||||||| ||||||||||| ||| | ||||  | |||||| ||||| |||| ||||||||||||||    
T  826844 catttttcatacaatcaagaggagtatgacattttcaagaagtttgagactttctatgatttcaaaagcttgcgaagtttcctacccattgg 826935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 301
Target Start/End: Complemental strand, 17852069 - 17851971
Alignment:
Q  203 ctctgaaaatgttcgtcatttgtcatataatcaagaagagtatgacattgtcaagaagtttcagattctctacaaattcaaatgcttgagaagcttcct 301  Q
    |||||||||| | |||||||||||||| ||||||| ||||||||| ||  ||| ||||||| ||| | | ||||| |||||| || || ||||||||||    
T  17852069 ctctgaaaatatccgtcatttgtcatacaatcaaggagagtatgatatcttcatgaagtttaagaatttatacaatttcaaacgcctgcgaagcttcct 17851971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 135
Target Start/End: Original strand, 29837414 - 29837498
Alignment:
Q  51 gagtgctttgctgaattgttatctagatcattaattcatcaactgcatggtgattctgaaggaaaaatatttgtcatgcatgacc 135  Q
    |||| ||||||||||||| |||||||||| |||||||| |||    ||| |||| |||| ||| ||| |||||||||||||||||    
T  29837414 gagttctttgctgaattgatatctagatccttaattcaacaagcatatgatgatactgatggagaaaaatttgtcatgcatgacc 29837498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University