View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4306_high_9 (Length: 400)
Name: NF4306_high_9
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4306_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 16 - 391
Target Start/End: Original strand, 56277259 - 56277637
Alignment:
| Q |
16 |
gagattgaggaggggtctctgaacagagacgtaatctctcatattctcacacgcgttccggccaagcctttgcttagcatgaaatgcatttccagagggt |
115 |
Q |
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| T |
56277259 |
gagagtgaggagggttctctcaacagagacgtcatctctcatattctcacacgcgttccggccaaacctttgcttagcatgaaatgcatttccagaggtt |
56277358 |
T |
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| Q |
116 |
ggaacaacatcatttcaagccgttcattcatcaaagatcaactcaaaaacactaatcttgttttaaatgcttttattgttcaagataggtacatgttctg |
215 |
Q |
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| T |
56277359 |
ggaaccacatcatttcaagccgttcattcatcaaagatcaactcaaaaacacaaatcttgttttaaatggttttattgttcaagataggtacatgttctg |
56277458 |
T |
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| Q |
216 |
caaacacgatgttaaaaccattagttacattcctgtccaacccaaa---aacgctgctaaactagttgttcaccacaatgttttttcttttcttcctcaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56277459 |
caaacacgatgttaaaaccattagttacattcctgtggaacccaaaaacaacgctgctaaactagttgttcaccacaatgttttttcttttcttcctcaa |
56277558 |
T |
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| Q |
313 |
gatgttgtgcttttgtcatcttgtaaaggaattctttgctgccgtacctgttttccttccccaaatccaaacatctatc |
391 |
Q |
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|||||||| ||||| | || |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
56277559 |
gatgttgttgttttggcttcctgtaaaggaattgtttgctgccgtacctgttttccttccccaaatccaaccatctatc |
56277637 |
T |
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