View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4306_low_10 (Length: 431)
Name: NF4306_low_10
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4306_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 20 - 427
Target Start/End: Original strand, 19578159 - 19578564
Alignment:
| Q |
20 |
tggtgtttgtggctatcgctttttcggattatagggttactaattgtttatttcctggacatgaaaaagagatggatcaagttatggagagttttccttt |
119 |
Q |
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| T |
19578159 |
tggtgtttgtggctatcgctttttcggattatagggttactaattgtttatttcctggacatgaaaaagagatggatcaagttatggagagttttccttt |
19578258 |
T |
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| Q |
120 |
gatggttggaataatttgtagcggtttgttccttatttttcctacttcaaggcatggaattggatgcatgtcttcctaatttattagtatatatgttttc |
219 |
Q |
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| T |
19578259 |
gatggttggaataatttgtagcggtttgttccttatttttcctacttcaaggcatggaattggatgcatgtcttcctaatttattagtatatatgttttc |
19578358 |
T |
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| Q |
220 |
tatttgtgtgcttgtttaatttgtttgctaactttatgtatatatatatctgtttaatttgtgccaaaacgatacgatggctgtgtaattttataaatat |
319 |
Q |
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| T |
19578359 |
tatttgtgtgcttgtttaatttgtttgctaactttatg--tatatatatctgtttaatttgtgacaaaacgatacaatggctgtgtaattttataaatat |
19578456 |
T |
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| Q |
320 |
tgattggagcaaatttagttcagttttttcacaatctttctgagtctataacaattgaatatgcgtagtactggttgcagtttgtggtatttcaatttca |
419 |
Q |
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| T |
19578457 |
tgattcgagcaaatttagttcagttttttcacaatctttctgagtctataacaattgaatatgcgtagcactggttgcagtttgtggtatttcaatttca |
19578556 |
T |
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| Q |
420 |
tctcactc |
427 |
Q |
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| T |
19578557 |
tatcactc |
19578564 |
T |
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Back To:
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Target: chr7 (Bit Score: 133; Significance: 5e-69; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 2787440 - 2787244
Alignment:
| Q |
15 |
agttttggtgtttgtggctatcgctttttcggattatagggttactaattgtttatttcctggacatgaaaaagagatggatcaagttatggagagtttt |
114 |
Q |
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| T |
2787440 |
agttatggtgtttgtggcgatcgctttttcggattatagggtgagtaattgtttgtttcctggacatgaaagggaaatggatcaagttatggagagtttt |
2787341 |
T |
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| Q |
115 |
cctttgatggttggaataatttgtagcggtttgttccttatttttcctacttcaaggcatggaattggatgcatgtcttcctaatttattagtatat |
211 |
Q |
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| T |
2787340 |
ccattgatggttggaattgtttgtagcggtttgtttcttatttttccaacttcaaggcgtggaattggatgcatgtctgcctaattttttagtatat |
2787244 |
T |
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