View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4306_low_12 (Length: 403)

Name: NF4306_low_12
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4306_low_12
NF4306_low_12
[»] chr3 (4 HSPs)
chr3 (16-400)||(47015861-47016245)
chr3 (146-188)||(32466752-32466794)
chr3 (155-211)||(10505293-10505349)
chr3 (129-187)||(16721234-16721292)
[»] chr7 (2 HSPs)
chr7 (148-216)||(24616533-24616601)
chr7 (362-400)||(29258303-29258341)
[»] chr8 (3 HSPs)
chr8 (342-400)||(28518490-28518548)
chr8 (151-191)||(32884123-32884163)
chr8 (146-178)||(27533568-27533600)
[»] chr4 (4 HSPs)
chr4 (148-210)||(6765861-6765923)
chr4 (362-400)||(41709454-41709492)
chr4 (156-191)||(12879764-12879799)
chr4 (146-191)||(12286146-12286191)
[»] chr2 (3 HSPs)
chr2 (108-237)||(12953990-12954118)
chr2 (130-400)||(29528311-29528582)
chr2 (64-138)||(29986455-29986531)
[»] chr1 (6 HSPs)
chr1 (108-183)||(13093358-13093434)
chr1 (154-191)||(10825050-10825087)
chr1 (339-396)||(15966173-15966230)
chr1 (142-210)||(9639312-9639379)
chr1 (146-182)||(15724171-15724207)
chr1 (158-210)||(49944238-49944290)
[»] chr6 (2 HSPs)
chr6 (155-191)||(20426958-20426994)
chr6 (137-188)||(26296678-26296731)
[»] scaffold1122 (1 HSPs)
scaffold1122 (144-189)||(1185-1230)
[»] chr5 (1 HSPs)
chr5 (144-189)||(12822832-12822877)


Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 16 - 400
Target Start/End: Original strand, 47015861 - 47016245
Alignment:
Q  16 ctgtgtatactagttgatgattaaatttggctagtgcatcatactgtttcaagtaatagagtagtaatttatcgtctccataagcatagtcatttcaacg 115  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||| |||    
T  47015861 ctgtatatactacttgatgattaaatttggctagtgcatcatactgtttcaattaatagagtagtaatttatcgtctccataagcattgccatttcgacg 47015960  T
Q  116 aggcaaatagataaacttattaattaaagcagtaaattggggggagtttgtaagtttgatttgattgcgcaaaacatttggtttgattgtagaaatagta 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47015961 aggcaaatagataaacttattaattaaagcagtaaattggggggagtttgtaagtttgatttgattgcgcaaaacatttggtttgattgtagaaatagta 47016060  T
Q  216 aaatatggttgatttagattatcaatggtgattaggaatcttagaatcccctctctaactctttgttggacacattgcaaatatttatggagtatgaaat 315  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  47016061 aaatatggttgatttagattatcagtggtgattaggaatcttagaatcccctctctaactctttgttggacacagtgcaaatatttatgaagtatgaaat 47016160  T
Q  316 attaattagatcaaagtggttagtttgtgggacataatacctccaaatgtcatgttgttcttcatcaccctaaaggtcatatgtg 400  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  47016161 atgaattagatcaaagtggttagtttgtgggacataatacctccaaatgtcatgttgttcttcatcaccctaaagatcatatgtg 47016245  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 32466794 - 32466752
Alignment:
Q  146 agtaaattggggggagtttgtaagtttgatttgattgcgcaaa 188  Q
    ||||||||| |||||||||| ||||||||||||||||||||||    
T  32466794 agtaaattgtggggagtttgcaagtttgatttgattgcgcaaa 32466752  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 10505349 - 10505293
Alignment:
Q  155 gggggagtttgtaagtttgatttgattgcgcaaaacatttggtttgattgtagaaat 211  Q
    ||||||||||| |||||||||||||||||| |||||| |||  ||||||| ||||||    
T  10505349 gggggagtttgcaagtttgatttgattgcgtaaaacaattgagttgattgcagaaat 10505293  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 16721234 - 16721292
Alignment:
Q  129 aacttattaattaaagcagtaaattggggggagtttgtaagtttgatttgattgcgcaa 187  Q
    ||||||| ||||||||||||||| ||||  ||||||| |||| | ||||||||||||||    
T  16721234 aacttatgaattaaagcagtaaaatgggatgagtttgcaagtgttatttgattgcgcaa 16721292  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 148 - 216
Target Start/End: Complemental strand, 24616601 - 24616533
Alignment:
Q  148 taaattggggggagtttgtaagtttgatttgattgcgcaaaacatttggtttgattgtagaaatagtaa 216  Q
    |||||||||||   |||| ||||||||||||||||||||||| | |||||||||||| |||||||||||    
T  24616601 taaattgggggagttttgcaagtttgatttgattgcgcaaaagagttggtttgattgcagaaatagtaa 24616533  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 400
Target Start/End: Original strand, 29258303 - 29258341
Alignment:
Q  362 atgtcatgttgttcttcatcaccctaaaggtcatatgtg 400  Q
    ||||||||||||||||||||| ||||||||| |||||||    
T  29258303 atgtcatgttgttcttcatcatcctaaaggttatatgtg 29258341  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 342 - 400
Target Start/End: Original strand, 28518490 - 28518548
Alignment:
Q  342 gtgggacataatacctccaaatgtcatgttgttcttcatcaccctaaaggtcatatgtg 400  Q
    ||||| || ||| ||||||| ||||||||||||| ||||||||||||||||||||||||    
T  28518490 gtggggcagaatccctccaagtgtcatgttgttcctcatcaccctaaaggtcatatgtg 28518548  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 32884163 - 32884123
Alignment:
Q  151 attggggggagtttgtaagtttgatttgattgcgcaaaaca 191  Q
    |||||||| |||||||||||||||||||||||| |||||||    
T  32884163 attgggggtagtttgtaagtttgatttgattgcacaaaaca 32884123  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 27533600 - 27533568
Alignment:
Q  146 agtaaattggggggagtttgtaagtttgatttg 178  Q
    |||||||||||||||||||| ||||||||||||    
T  27533600 agtaaattggggggagtttgcaagtttgatttg 27533568  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 148 - 210
Target Start/End: Complemental strand, 6765923 - 6765861
Alignment:
Q  148 taaattggggggagtttgtaagtttgatttgattgcgcaaaacatttggtttgattgtagaaa 210  Q
    |||| ||||||||||||| ||||||||||||||||||||||||| |||  || ||||||||||    
T  6765923 taaaatggggggagtttgcaagtttgatttgattgcgcaaaacagttgagtttattgtagaaa 6765861  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 362 - 400
Target Start/End: Complemental strand, 41709492 - 41709454
Alignment:
Q  362 atgtcatgttgttcttcatcaccctaaaggtcatatgtg 400  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  41709492 atgtcatgttgttcttcatcaccctaaaggttatatgtg 41709454  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 191
Target Start/End: Original strand, 12879764 - 12879799
Alignment:
Q  156 ggggagtttgtaagtttgatttgattgcgcaaaaca 191  Q
    |||||||||| |||||||||||||||||||||||||    
T  12879764 ggggagtttgcaagtttgatttgattgcgcaaaaca 12879799  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 12286146 - 12286191
Alignment:
Q  146 agtaaattggggggagtttgtaagtttgatttgattgcgcaaaaca 191  Q
    |||||||| ||||||||||| | |||| ||||||||||||||||||    
T  12286146 agtaaatttgggggagtttgaatgttttatttgattgcgcaaaaca 12286191  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 237
Target Start/End: Original strand, 12953990 - 12954118
Alignment:
Q  108 tttcaacgaggcaaatagataaacttattaattaaagcagtaaattggggggagtttgtaagtttgatttgattgcgcaaaacatttggtttgattgtag 207  Q
    |||| ||||||||| ||| || ||||||||||||| ||||||||| ||| | | |||  ||||||| ||||||||| ||||  | ||||||||| || ||    
T  12953990 tttctacgaggcaattagctagacttattaattaaggcagtaaatagggcg-atttttcaagtttggtttgattgcacaaagaagttggtttgactgcag 12954088  T
Q  208 aaatagtaaaatatggttgatttagattat 237  Q
    |||||||||||   |||||||| |||||||    
T  12954089 aaatagtaaaagggggttgattcagattat 12954118  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 130 - 400
Target Start/End: Original strand, 29528311 - 29528582
Alignment:
Q  130 acttattaattaaagcagtaaattggggggagtttgtaagtttgatttgattgcgcaaaac-atttggtttgattgtagaaatagtaaaatatggttgat 228  Q
    ||||| |||| ||||||||||| |||| |||||||| ||||||  |||||||| | ||||| | ||  ||||  || ||||||||||||||  | |||||    
T  29528311 acttactaataaaagcagtaaaatgggaggagtttgcaagttttgtttgattgtgtaaaacgagttaatttgtctgcagaaatagtaaaatgagtttgat 29528410  T
Q  229 ttagattatcaatggtgattaggaatcttagaatcccctctctaactctttgttggacacattgcaaatattt--atggagtatgaaatattaattagat 326  Q
    | |||| || |  ||||||||||| |||| ||||||||||   | ||||||||| ||   | ||||||||| |  ||  | |||||||||    ||| ||    
T  29528411 tcagatgattagcggtgattaggattcttcgaatcccctcc--acctctttgtttgatttaatgcaaatatgtctatcaattatgaaataaggtttatat 29528508  T
Q  327 caaagtggttagtttgtgggacataatacctccaaatgtcatgttgttcttcatcaccctaaaggtcatatgtg 400  Q
     |||||| ||||||||| ||| | ||| |||| | ||||||||||  || ||||||||||||| ||||||||||    
T  29528509 aaaagtgattagtttgtaggatagaatccctcaagatgtcatgtttctcctcatcaccctaaacgtcatatgtg 29528582  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 29986531 - 29986455
Alignment:
Q  64 tcaagtaatagagtagtaattta--tcgtctccataagcatagtcatttcaacgaggcaaatagataaacttattaa 138  Q
    |||||||||| |||||||||| |  ||||||| ||||| || ||||||||||| |||||| ||| | ||||||||||    
T  29986531 tcaagtaataaagtagtaattaaactcgtctcgataaggattgtcatttcaactaggcaactagctcaacttattaa 29986455  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 108 - 183
Target Start/End: Original strand, 13093358 - 13093434
Alignment:
Q  108 tttcaacgaggcaaatagataaacttattaa-ttaaagcagtaaattggggggagtttgtaagtttgatttgattgc 183  Q
    |||||||||||||| | | ||||  |||||| |||||||| |||||||| ||||||||| |||||||||||||||||    
T  13093358 tttcaacgaggcaatttgttaaatctattaaattaaagcaataaattggtgggagtttgcaagtttgatttgattgc 13093434  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 154 - 191
Target Start/End: Original strand, 10825050 - 10825087
Alignment:
Q  154 ggggggagtttgtaagtttgatttgattgcgcaaaaca 191  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  10825050 ggggggagtttgtaagttttatttgattgcgcaaaaca 10825087  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 339 - 396
Target Start/End: Original strand, 15966173 - 15966230
Alignment:
Q  339 tttgtgggacataatacctccaaatgtcatgttgttcttcatcaccctaaaggtcata 396  Q
    ||||||| ||||||| |||||| ||| |||| || || ||||||||||||||||||||    
T  15966173 tttgtggaacataattcctccatatgccatgatgctcctcatcaccctaaaggtcata 15966230  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 9639379 - 9639312
Alignment:
Q  142 aagcagtaaattggggggagtttgtaagtttgatttgattgcgcaaaacatttggtttgattgtagaaa 210  Q
    |||||||||| |||||| ||||||   |||||||||||||| ||||| || |||| |||||||||||||    
T  9639379 aagcagtaaaatggggg-agtttgcgtgtttgatttgattgagcaaatcagttggattgattgtagaaa 9639312  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 15724207 - 15724171
Alignment:
Q  146 agtaaattggggggagtttgtaagtttgatttgattg 182  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  15724207 agtaagttggggggagtttgcaagtttgatttgattg 15724171  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 49944290 - 49944238
Alignment:
Q  158 ggagtttgtaagtttgatttgattgcgcaaaacatttggtttgattgtagaaa 210  Q
    ||||||||| ||||||||||||||| |||||||| |||| || ||||| ||||    
T  49944290 ggagtttgttagtttgatttgattgtgcaaaacagttggatttattgttgaaa 49944238  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 191
Target Start/End: Complemental strand, 20426994 - 20426958
Alignment:
Q  155 gggggagtttgtaagtttgatttgattgcgcaaaaca 191  Q
    ||||||||||| |||||||||||||||||||||||||    
T  20426994 gggggagtttgcaagtttgatttgattgcgcaaaaca 20426958  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 26296678 - 26296731
Alignment:
Q  137 aattaaagca-gtaaattgggggga-gtttgtaagtttgatttgattgcgcaaa 188  Q
    |||||||||| |||||||||||||| ||||| |||||||||||||||| |||||    
T  26296678 aattaaagcaagtaaattggggggaagtttgcaagtttgatttgattgtgcaaa 26296731  T

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Target: scaffold1122 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1122
Description:

Target: scaffold1122; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 1185 - 1230
Alignment:
Q  144 gcagtaaattggggggagtttgtaagtttgatttgattgcgcaaaa 189  Q
    |||||||||| ||||||||||| |||||| |||| |||||||||||    
T  1185 gcagtaaatttgggggagtttgcaagttttatttaattgcgcaaaa 1230  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 12822877 - 12822832
Alignment:
Q  144 gcagtaaattggggggagtttgtaagtttgatttgattgcgcaaaa 189  Q
    |||||||||| ||||||||||| |||||| |||| |||||||||||    
T  12822877 gcagtaaatttgggggagtttgcaagttttatttaattgcgcaaaa 12822832  T

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