View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4306_low_14 (Length: 387)
Name: NF4306_low_14
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4306_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 34133630 - 34133985
Alignment:
| Q |
1 |
atggagagttttggtctgtgttcttgctcttgaacaaaagcagggtccacttctcccatggttgttttgttctgttgctagagtttgtgaatcaataatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34133630 |
atggagagttttggtctgtgttcttgctcttgaacaaaagcagggtccacttctcccatggttgttttgttctgttgctagagtttgtgaatcaataatg |
34133729 |
T |
|
| Q |
101 |
ttgaaaatggttaattttttgtgtctctcttatttaataggttgtttcaaaaacatgacaaaaaacataacgtaagtacgtacctactattgtaaaggta |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34133730 |
ttgaagatggttaattttttgtgtctctcttatttaataggttgtttcaaaaacatgacaaaaaacata--gtaagtacgtacctactattgtaaaggta |
34133827 |
T |
|
| Q |
201 |
aaattgtaaattgtaatagtggaatcaatttagacggcataatagtataatacattgaatctggacttattttagcatataccgtatgtaaccattaaat |
300 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34133828 |
aaattgt-aattgtaatagtggaatcaacgtagacggc--------ataatacattgaatctggacttattttagcatataccgtatgtaaccattaaat |
34133918 |
T |
|
| Q |
301 |
ggtgtctacgtcctcatcctcatgtcacttttatagacaaaaattcatttcattcaataaataatgtatatagt |
374 |
Q |
| |
|
||| |||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34133919 |
ggt------gtcctcatcctcatgtcactctt-taaacaaaaattcatttcattcaataaataatgtatatagt |
34133985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 34137544 - 34137600
Alignment:
| Q |
4 |
gagagttttggtctgtgttcttgctcttgaacaaaagcagggtccacttctcccatg |
60 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
34137544 |
gagagttttggtctgtgttcttgctcttgaacaaaagctgggtctacttctcccatg |
34137600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 34127357 - 34127420
Alignment:
| Q |
1 |
atggagagttttggtctgtgttcttgctcttgaacaaaagcagggtccacttctcccatggttg |
64 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| || ||||| |||||||||||||| |
|
|
| T |
34127357 |
atggatagttttggtctgtgttcttgctcttgaacaaatgctaagtccaattctcccatggttg |
34127420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 34141206 - 34141265
Alignment:
| Q |
3 |
ggagagttttggtctgtgttcttgctcttgaacaaaagcagggtccacttctcccatggt |
62 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||| ||||| || ||||||||||| |
|
|
| T |
34141206 |
ggagagttttggtctgtgttctagctcttgaacgaaagttgggtctacctctcccatggt |
34141265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University