View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4306_low_15 (Length: 375)
Name: NF4306_low_15
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4306_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 19 - 367
Target Start/End: Original strand, 2154053 - 2154399
Alignment:
| Q |
19 |
agggggaaggagaatgttagtaataattaaagtggcgttaatagtcattttacaatcgcgtctgatgggatttgaattccggcccttaaagttaaaaggt |
118 |
Q |
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| T |
2154053 |
agggggaaggagaatgttagt--taattaaagtggcgttaatagtcattttacaattgcgcctgatgggatttgaattccggcccttaaagttaaaaggt |
2154150 |
T |
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| Q |
119 |
caaactttcaccgctgaaccgacacctcacaaatagaaaaccataatcttattcgaacaagaactaatcatcaaaatggaaccaaattaagaaacattat |
218 |
Q |
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| T |
2154151 |
caaactttcaccgctgaaccaacacctcacaaatagaaaaccataatcttattcgaacaagaactaatcatcaaaatggaaccaaattaagaaatattat |
2154250 |
T |
|
| Q |
219 |
taatacctgtccattctttccttgagtttcaacaagaacttttcattatcttcttctgctattttcacaagtctatctaacaaggctcttttttctgttg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2154251 |
taatacctgtccattctttccttgagtttcaacaagaacttttcattatcttcttctgctattttcacaagtctagctaacaaggctcttttttctgttg |
2154350 |
T |
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| Q |
319 |
attcaagttgaatggtctcaacatcttttccttctccttctcctttgct |
367 |
Q |
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| T |
2154351 |
attcaagttgaatggtctcaacatcttttccttttccttctcctttgct |
2154399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 2166676 - 2166752
Alignment:
| Q |
221 |
atacctgtccattctttccttgagtttcaacaagaacttttcattatcttcttctgctattttcacaagtctatcta |
297 |
Q |
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| T |
2166676 |
atacctttcgattctttccttgagtttcaacaagaacttttcgttatcttcttcagcaattttcacaagtctctcta |
2166752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 274
Target Start/End: Complemental strand, 2872077 - 2872025
Alignment:
| Q |
222 |
tacctgtccattctttccttgagtttcaacaagaacttttcattatcttcttc |
274 |
Q |
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||||| || ||||||||||| || |||||||| |||||||||||||| ||||| |
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| T |
2872077 |
tacctatcaattctttcctttagcttcaacaaaaacttttcattatcctcttc |
2872025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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