View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4306_low_18 (Length: 360)

Name: NF4306_low_18
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4306_low_18
NF4306_low_18
[»] chr1 (11 HSPs)
chr1 (19-350)||(23896026-23896360)
chr1 (109-243)||(24629190-24629324)
chr1 (69-241)||(25610902-25611077)
chr1 (127-309)||(24626769-24626961)
chr1 (109-330)||(24512904-24513128)
chr1 (127-241)||(24242854-24242968)
chr1 (129-239)||(24246496-24246606)
chr1 (118-245)||(25478801-25478928)
chr1 (107-290)||(24221973-24222156)
chr1 (129-238)||(24634804-24634912)
chr1 (109-183)||(45692866-45692943)
[»] chr4 (1 HSPs)
chr4 (109-243)||(11032848-11032982)
[»] chr7 (1 HSPs)
chr7 (109-182)||(1421148-1421221)
[»] scaffold0015 (2 HSPs)
scaffold0015 (112-189)||(32311-32388)
scaffold0015 (112-189)||(40363-40440)
[»] chr5 (5 HSPs)
chr5 (129-227)||(3181671-3181769)
chr5 (131-182)||(11081812-11081863)
chr5 (131-182)||(23766863-23766914)
chr5 (131-182)||(23816711-23816762)
chr5 (140-181)||(20292995-20293036)
[»] chr3 (18 HSPs)
chr3 (131-182)||(2696733-2696784)
chr3 (131-182)||(4142135-4142186)
chr3 (131-182)||(4157945-4157996)
chr3 (131-183)||(3754598-3754650)
chr3 (131-181)||(7324432-7324482)
chr3 (140-181)||(13498224-13498265)
chr3 (140-179)||(2459277-2459316)
chr3 (140-182)||(803228-803270)
chr3 (131-181)||(956381-956431)
chr3 (131-181)||(1437996-1438045)
chr3 (131-181)||(2456249-2456299)
chr3 (131-181)||(7334240-7334290)
chr3 (131-181)||(7942485-7942535)
chr3 (119-180)||(768318-768379)
chr3 (131-180)||(2631358-2631407)
chr3 (140-181)||(43991960-43992001)
chr3 (131-179)||(23230983-23231031)
chr3 (131-187)||(37753346-37753402)
[»] chr2 (2 HSPs)
chr2 (131-181)||(36577366-36577416)
chr2 (116-181)||(7156178-7156243)
[»] chr6 (3 HSPs)
chr6 (116-179)||(19119065-19119128)
chr6 (116-179)||(19126359-19126422)
chr6 (114-183)||(17368364-17368433)
[»] scaffold0044 (1 HSPs)
scaffold0044 (131-183)||(89141-89193)


Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 350
Target Start/End: Original strand, 23896026 - 23896360
Alignment:
Q  19 cagccatcccccatttaccattctgcataatggcaagcagcatatggctatcgtcctcagaaacatataatatcttggtaataatgcaaccaccaaagta 118  Q
    |||||||||||| ||||||||||||||||| ||| ||||||||||||| |||||||||| |||||||||||||||||||||||  | |||||||||||||    
T  23896026 cagccatcccccgtttaccattctgcataaaggcgagcagcatatggccatcgtcctcaaaaacatataatatcttggtaatacggaaaccaccaaagta 23896125  T
Q  119 aggaacatgaatcaatttaacccaagactctttatttccgtattccttcataagccaaacatcaataaaagggtaagaattagcaaatacgcacaggcaa 218  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23896126 aggaacatgaataaatttaacccaagactctttatttccatattccttcataagccaaacatcaataaaagagtaagaattagcaaatacgcacaggcaa 23896225  T
Q  219 tccctcatcatacccaaggtcaagttatctataattccatagttaggttgtggaatctctttgtaacactctttttctaaatcaagtgaaacaacgacac 318  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||    
T  23896226 tccctcatcatacccaaggtcaacttatctataattccatagttaggttgttgaatctcttggtaacactctttttctaaatcaagtgaaacaatgacac 23896325  T
Q  319 tcgagaaatta---cgagacacaacactagaataa 350  Q
    |||||||||||   |||||||||||| ||||||||    
T  23896326 tcgagaaattacctcgagacacaacattagaataa 23896360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 109 - 243
Target Start/End: Original strand, 24629190 - 24629324
Alignment:
Q  109 caccaaagtaaggaacatgaatcaatttaacccaagactctttatttccgtattccttcataagccaaacatcaataaaagggtaagaattagcaaatac 208  Q
    ||||||||||||||| ||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||  || |||||  | |||||     
T  24629190 caccaaagtaaggaagatggatgaatttaatccaagactctttatttccgtattccttcataagccaaacatctgtaaaaaagtgagaatacgaaaatat 24629289  T
Q  209 gcacaggcaatccctcatcatacccaaggtcaagt 243  Q
     ||||||||||||||||||||||||||||||||||    
T  24629290 acacaggcaatccctcatcatacccaaggtcaagt 24629324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 69 - 241
Target Start/End: Original strand, 25610902 - 25611077
Alignment:
Q  69 tcgtcctcagaaacatataatatcttggtaataatg---caaccaccaaagtaaggaacatgaatcaatttaacccaagactctttatttccgtattcct 165  Q
    ||||||||| ||| ||||||||||||||||| || |   | ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||     
T  25610902 tcgtcctcataaatatataatatcttggtaaaaaggtaaccaccaccaaagtaaggaagatgaatcaatttaacccaagattctttatttccgtattccg 25611001  T
Q  166 tcataagccaaacatcaataaaagggtaagaattagcaaatacgcacaggcaatccctcatcatacccaaggtcaa 241  Q
    |||| ||||||||||||  ||| |||| ||||| || ||||| |||||  ||||| ||||||| ||||||| ||||    
T  25611002 tcattagccaaacatcataaaatgggtgagaataagaaaatatgcacaaacaatctctcatcacacccaagttcaa 25611077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 127 - 309
Target Start/End: Original strand, 24626769 - 24626961
Alignment:
Q  127 gaatcaatttaacccaagactctttatttccgtattccttcataagccaaacatcaataaaag--ggtaa-------gaattagcaaatacgcacaggca 217  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||   | ||       |||| || |||||  ||||  ||    
T  24626769 gaatcaatttaacccaagactctttaattctgtattccttcataagccaaacatcgataaaagaccgcaaagaccgcgaatgagaaaatatacacaacca 24626868  T
Q  218 atccctcatcatacccaaggtcaagttatctataattccatagttaggttgtggaatctctttgtaacactctttt-tctaaatcaagtgaaa 309  Q
    ||||||||||||||| || ||||| |||||    ||||||||||||||||||| ||| |||||||||||||||||| || |||||||| ||||    
T  24626869 atccctcatcataccgaaagtcaatttatcgggcattccatagttaggttgtgaaatttctttgtaacactcttttctccaaatcaagagaaa 24626961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 109 - 330
Target Start/End: Complemental strand, 24513128 - 24512904
Alignment:
Q  109 caccaaagtaaggaacatgaatcaatttaacccaagactctttatttccgtattccttcataagccaaacatcaataaaagggtaagaattagcaaatac 208  Q
    ||||||||||||||| ||| |||||||||| ||| ||||||||| |||| ||||| |||||||||||||||||| | |||| || ||||| || | |||     
T  24513128 caccaaagtaaggaagatggatcaatttaatccatgactctttacttccatattctttcataagccaaacatcattgaaagagttagaatgagaacatat 24513029  T
Q  209 gcacaggcaatccctcatcatacccaaggtcaagttatctataattc---catagttaggttgtggaatctctttgtaacactctttttctaaatcaagt 305  Q
    |||||  ||||| || |||||||||||||| || | | |    ||||   |||||||||||| || |||||||| ||||||||||||  | ||||||||     
T  24513028 gcacaaacaatctcttatcatacccaaggtaaaataaaccggcattccatcatagttaggttctgaaatctcttggtaacactctttccccaaatcaaga 24512929  T
Q  306 gaaacaacgacactcgagaaattac 330  Q
    ||||||| | ||| ||| |||||||    
T  24512928 gaaacaatggcacgcgataaattac 24512904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 127 - 241
Target Start/End: Original strand, 24242854 - 24242968
Alignment:
Q  127 gaatcaatttaacccaagactctttatttccgtattccttcataagccaaacatcaataaaagggtaagaattagcaaatacgcacaggcaatccctcat 226  Q
    |||| ||||||| ||||||||||||||||||||||  ||||||||||||||||||| |||||| || ||||| || ||||| ||||| | |||||| |||    
T  24242854 gaattaatttaatccaagactctttatttccgtatatcttcataagccaaacatcagtaaaagagtcagaataagaaaataggcacaagaaatcccgcat 24242953  T
Q  227 catacccaaggtcaa 241  Q
    || ||||| ||||||    
T  24242954 cacacccatggtcaa 24242968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 24246496 - 24246606
Alignment:
Q  129 atcaatttaacccaagactctttatttccgtattccttcataagccaaacatcaataaaagggtaagaattagcaaatacgcacaggcaatccctcatca 228  Q
    |||||||| | |||||||||||||||||||||||| |||||||||||||||||| |||||   |  |||| || ||||| ||||| ||||||||| ||||    
T  24246496 atcaatttcatccaagactctttatttccgtattctttcataagccaaacatcagtaaaatattctgaatgagaaaatatgcacaagcaatcccttatca 24246595  T
Q  229 tacccaaggtc 239  Q
    |||||||||||    
T  24246596 tacccaaggtc 24246606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 118 - 245
Target Start/End: Complemental strand, 25478928 - 25478801
Alignment:
Q  118 aaggaacatgaatcaatttaacccaagactctttatttccgtattccttcataagccaaacatcaataaaagggtaagaattagcaaatacgcacaggca 217  Q
    |||||| ||| |||||||||| |||||| |||||||| ||||||||||||||||||||||||||||| || | || |||   || |||||| ||||  ||    
T  25478928 aaggaagatggatcaatttaatccaagattctttattaccgtattccttcataagccaaacatcaatcaatgagtcagagcaagaaaatacacacaaaca 25478829  T
Q  218 atccctcatcatacccaaggtcaagtta 245  Q
    |||| |||| |||||||| |||||||||    
T  25478828 atccttcatgatacccaacgtcaagtta 25478801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 290
Target Start/End: Original strand, 24221973 - 24222156
Alignment:
Q  107 accaccaaagtaaggaacatgaatcaatttaacccaagactctttatttccgtattccttcataagccaaacatcaataaaagggtaagaattagcaaat 206  Q
    ||||||||||||||||| | | ||||| ||||||||||| |||| |||| |||| ||| ||| ||||||||||||| |||| | ||  |||| || || |    
T  24221973 accaccaaagtaaggaagacggatcaacttaacccaagattcttgattttcgtaatccatcaaaagccaaacatcattaaatgagtcggaatgagaaact 24222072  T
Q  207 acgcacaggcaatccctcatcatacccaaggtcaagttatctataattccatagttaggttgtggaatctctttgtaacactct 290  Q
    | |||||  |||||||||| ||||| || |||||| ||| | |  |||||||| | |||||| | ||||||||||||| |||||    
T  24222073 atgcacaaacaatccctcagcatacacatggtcaacttaacaaacattccataatcaggttgcgaaatctctttgtaagactct 24222156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 129 - 238
Target Start/End: Original strand, 24634804 - 24634912
Alignment:
Q  129 atcaatttaacccaagactctttatttccgtattccttcataagccaaacatcaataaaagggtaagaattagcaaatacgcacaggcaatccctcatca 228  Q
    ||||||| || | ||||||||||| ||||||||||||||||||||||||||||| || ||| || ||||| || | ||| |||||   ||||||| ||||    
T  24634804 atcaattcaatctaagactctttaattccgtattccttcataagccaaacatcattagaagagtcagaatgagaacatatgcaca-aaaatcccttatca 24634902  T
Q  229 tacccaaggt 238  Q
    ||||||||||    
T  24634903 tacccaaggt 24634912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 183
Target Start/End: Original strand, 45692866 - 45692943
Alignment:
Q  109 caccaaagtaaggaacatgaatcaatttaacccaagactctt---tatttccgtattccttcataagccaaacatcaa 183  Q
    |||||||||||| || |  |||||||||||  |||||||| |   ||| |||||||||||||||||||||||||||||    
T  45692866 caccaaagtaagaaagacaaatcaatttaatacaagactcctccttatatccgtattccttcataagccaaacatcaa 45692943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 109 - 243
Target Start/End: Complemental strand, 11032982 - 11032848
Alignment:
Q  109 caccaaagtaaggaacatgaatcaatttaacccaagactctttatttccgtattccttcataagccaaacatcaataaaagggtaagaattagcaaatac 208  Q
    ||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||  |||||| || |||||  | |||||     
T  11032982 caccaaagtaaggaagatggatcaatttaatccaagactctttatttccgtattccttcatgagccaaacatcggtaaaagagtgagaatatgaaaatat 11032883  T
Q  209 gcacaggcaatccctcatcatacccaaggtcaagt 243  Q
     ||||||||||||||||||||||||||||||||||    
T  11032882 acacaggcaatccctcatcatacccaaggtcaagt 11032848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 1421148 - 1421221
Alignment:
Q  109 caccaaagtaaggaacatgaatcaatttaacccaagactctttatttccgtattccttcataagccaaacatca 182  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1421148 caccaaagtaaggaagatgaatcaatttaatccaagactctttatttccgtattccttcataagccaaacatca 1421221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 112 - 189
Target Start/End: Original strand, 32311 - 32388
Alignment:
Q  112 caaagtaaggaacatgaatcaatttaacccaagactctttatttccgtattccttcataagccaaacatcaataaaag 189  Q
    ||||| |||||| | |||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  32311 caaaggaaggaagacgaatcaatttaatccaagagtctttatttccatattccttcataagccaaacatcaataaaag 32388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 112 - 189
Target Start/End: Original strand, 40363 - 40440
Alignment:
Q  112 caaagtaaggaacatgaatcaatttaacccaagactctttatttccgtattccttcataagccaaacatcaataaaag 189  Q
    ||||| |||||| | |||||||||||| |||||| ||||||||| | |||||||||||||||||||||||| ||||||    
T  40363 caaaggaaggaagacgaatcaatttaatccaagagtctttattttcatattccttcataagccaaacatcagtaaaag 40440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 227
Target Start/End: Complemental strand, 3181769 - 3181671
Alignment:
Q  129 atcaatttaacccaagactctttatttccgtattccttcataagccaaacatcaataaaagggtaagaattagcaaatacgcacaggcaatccctcatc 227  Q
    |||||||||| ||||||||||| |||||| ||||||||||||||||||||||||  ||||| ||  |||| || |||||| ||||  || |||||||||    
T  3181769 atcaatttaatccaagactcttcatttccatattccttcataagccaaacatcatcaaaagagtcggaatgagaaaatacacacaaacattccctcatc 3181671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 131 - 182
Target Start/End: Complemental strand, 11081863 - 11081812
Alignment:
Q  131 caatttaacccaagactctttatttccgtattccttcataagccaaacatca 182  Q
    |||||||  |||||||||||||||||| || |||||||||| ||||||||||    
T  11081863 caatttagtccaagactctttatttccatactccttcataacccaaacatca 11081812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 23766863 - 23766914
Alignment:
Q  131 caatttaacccaagactctttatttccgtattccttcataagccaaacatca 182  Q
    |||||||  |||||||||||||||||| ||||| ||||||| ||||||||||    
T  23766863 caatttagtccaagactctttatttccatattctttcataatccaaacatca 23766914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 23816711 - 23816762
Alignment:
Q  131 caatttaacccaagactctttatttccgtattccttcataagccaaacatca 182  Q
    |||||||  |||||||||||||||||| ||||| ||||||| ||||||||||    
T  23816711 caatttagtccaagactctttatttccatattctttcataatccaaacatca 23816762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 20293036 - 20292995
Alignment:
Q  140 ccaagactctttatttccgtattccttcataagccaaacatc 181  Q
    ||||||||||||| |||| ||||||||||||| |||||||||    
T  20293036 ccaagactctttaattccatattccttcataatccaaacatc 20292995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 2696733 - 2696784
Alignment:
Q  131 caatttaacccaagactctttatttccgtattccttcataagccaaacatca 182  Q
    |||||||| |||||||||||||||||| ||||||||||||| ||||||||||    
T  2696733 caatttaatccaagactctttatttccatattccttcataatccaaacatca 2696784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 4142135 - 4142186
Alignment:
Q  131 caatttaacccaagactctttatttccgtattccttcataagccaaacatca 182  Q
    |||||||  |||||||||||||||||| ||||||||||||||||||||||||    
T  4142135 caatttagtccaagactctttatttccatattccttcataagccaaacatca 4142186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 4157945 - 4157996
Alignment:
Q  131 caatttaacccaagactctttatttccgtattccttcataagccaaacatca 182  Q
    |||||||  |||||||||||||||||| ||||||||||||||||||||||||    
T  4157945 caatttagtccaagactctttatttccatattccttcataagccaaacatca 4157996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 3754650 - 3754598
Alignment:
Q  131 caatttaacccaagactctttatttccgtattccttcataagccaaacatcaa 183  Q
    |||||||  |||||||||||||||||| ||||||||||||| |||||||||||    
T  3754650 caatttagtccaagactctttatttccatattccttcataacccaaacatcaa 3754598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 7324432 - 7324482
Alignment:
Q  131 caatttaacccaagactctttatttccgtattccttcataagccaaacatc 181  Q
    |||||||  ||||||||||||||||||||| |||||||||| |||||||||    
T  7324432 caatttagtccaagactctttatttccgtagtccttcataatccaaacatc 7324482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 13498265 - 13498224
Alignment:
Q  140 ccaagactctttatttccgtattccttcataagccaaacatc 181  Q
    |||||||||||||||||| ||||||||||||| |||||||||    
T  13498265 ccaagactctttatttccatattccttcataatccaaacatc 13498224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 179
Target Start/End: Complemental strand, 2459316 - 2459277
Alignment:
Q  140 ccaagactctttatttccgtattccttcataagccaaaca 179  Q
    |||||||||||||||||| ||||||||||||| |||||||    
T  2459316 ccaagactctttatttccatattccttcataatccaaaca 2459277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 803228 - 803270
Alignment:
Q  140 ccaagactctttatttccgtattccttcataagccaaacatca 182  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||    
T  803228 ccaagactctttatttccatattctttcataacccaaacatca 803270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 956431 - 956381
Alignment:
Q  131 caatttaacccaagactctttatttccgtattccttcataagccaaacatc 181  Q
    |||||||  |||||||||||| ||||| ||||||||||||| |||||||||    
T  956431 caatttatgccaagactctttttttccatattccttcataatccaaacatc 956381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 1438045 - 1437996
Alignment:
Q  131 caatttaacccaagactctttatttccgtattccttcataagccaaacatc 181  Q
    |||||||| |||||| ||||||||||| ||||||||||||| |||||||||    
T  1438045 caatttaatccaagagtctttatttccatattccttcataa-ccaaacatc 1437996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 2456299 - 2456249
Alignment:
Q  131 caatttaacccaagactctttatttccgtattccttcataagccaaacatc 181  Q
    |||||||  |||||| ||||||||||| ||||||||||||| |||||||||    
T  2456299 caatttagtccaagagtctttatttccatattccttcataacccaaacatc 2456249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 7334240 - 7334290
Alignment:
Q  131 caatttaacccaagactctttatttccgtattccttcataagccaaacatc 181  Q
    |||||||  ||||||||||||||||||||| |||||||| | |||||||||    
T  7334240 caatttagtccaagactctttatttccgtagtccttcatgatccaaacatc 7334290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 7942535 - 7942485
Alignment:
Q  131 caatttaacccaagactctttatttccgtattccttcataagccaaacatc 181  Q
    |||||||| ||||||||||||||| || || |||||||||| |||||||||    
T  7942535 caatttaatccaagactctttattaccatactccttcataatccaaacatc 7942485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 768318 - 768379
Alignment:
Q  119 aggaacatgaatcaatttaacccaagactctttatttccgtattccttcataagccaaacat 180  Q
    ||||||||| | |||||||  ||||||||||| ||||||||| || ||||||| ||||||||    
T  768318 aggaacatggaacaatttagtccaagactcttcatttccgtactcattcataatccaaacat 768379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 2631407 - 2631358
Alignment:
Q  131 caatttaacccaagactctttatttccgtattccttcataagccaaacat 180  Q
    |||||||  ||||||||||| |||||| ||||||||||||| ||||||||    
T  2631407 caatttagtccaagactcttgatttccatattccttcataatccaaacat 2631358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 43992001 - 43991960
Alignment:
Q  140 ccaagactctttatttccgtattccttcataagccaaacatc 181  Q
    |||||||||| ||||||| ||||||||||||| |||||||||    
T  43992001 ccaagactctatatttccatattccttcataatccaaacatc 43991960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 23230983 - 23231031
Alignment:
Q  131 caatttaacccaagactctttatttccgtattccttcataagccaaaca 179  Q
    |||||||| ||||||||||| |||||| ||||| ||||| |||||||||    
T  23230983 caatttaatccaagactcttcatttccatattctttcattagccaaaca 23231031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 37753346 - 37753402
Alignment:
Q  131 caatttaacccaagactctttatttccgtattccttcataagccaaacatcaataaa 187  Q
    |||||||  |||||||||||| ||||| ||||||| ||||| ||||||||| |||||    
T  37753346 caatttagtccaagactctttctttccatattcctccataatccaaacatccataaa 37753402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 36577416 - 36577366
Alignment:
Q  131 caatttaacccaagactctttatttccgtattccttcataagccaaacatc 181  Q
    |||||||| |||||||||||||||||| ||||||||||||| |||||||||    
T  36577416 caatttaatccaagactctttatttccatattccttcataatccaaacatc 36577366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 181
Target Start/End: Original strand, 7156178 - 7156243
Alignment:
Q  116 gtaaggaacatgaatcaatttaacccaagactctttatttccgtattccttcataagccaaacatc 181  Q
    |||||||||| | | ||||||| ||||||| |||| |||||| || ||||||||||||||||||||    
T  7156178 gtaaggaacacggaacaatttagcccaagaatcttcatttccatactccttcataagccaaacatc 7156243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 19119128 - 19119065
Alignment:
Q  116 gtaaggaacatgaatcaatttaacccaagactctttatttccgtattccttcataagccaaaca 179  Q
    |||||||||||||| |||||||  ||||||||||| |||||| ||||||||||| | |||||||    
T  19119128 gtaaggaacatgaaacaatttagtccaagactcttcatttccatattccttcatcaaccaaaca 19119065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 19126422 - 19126359
Alignment:
Q  116 gtaaggaacatgaatcaatttaacccaagactctttatttccgtattccttcataagccaaaca 179  Q
    |||||||||||||| |||||||  ||||||||||| |||||| ||||||||||| | |||||||    
T  19126422 gtaaggaacatgaaacaatttagtccaagactcttcatttccatattccttcatcaaccaaaca 19126359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 17368433 - 17368364
Alignment:
Q  114 aagtaaggaacatgaatcaatttaacccaagactctttatttccgtattccttcataagccaaacatcaa 183  Q
    |||||||||||||||| |||||||  ||||||| ||| |||||| || || ||||| |||||||||||||    
T  17368433 aagtaaggaacatgaaacaatttagtccaagacccttcatttccatactctttcatcagccaaacatcaa 17368364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 89193 - 89141
Alignment:
Q  131 caatttaacccaagactctttatttccgtattccttcataagccaaacatcaa 183  Q
    |||||||  |||||||||||||||||| ||||||||||||| ||||| |||||    
T  89193 caatttagtccaagactctttatttccatattccttcataacccaaatatcaa 89141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University